BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24120.1
Length=2430
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492451 jgi|Araly1|492451|fgenesh2_kg.7__1884__AT4G24120.1 3688 0.0
Ahg905429 jgi|Araly1|905429|Al_scaffold_0003_2557 213 5e-54
> Ahg492451 jgi|Araly1|492451|fgenesh2_kg.7__1884__AT4G24120.1
Length=2411
Score = 3688 bits (1997), Expect = 0.0
Identities = 2289/2425 (94%), Gaps = 39/2425 (2%)
Strand=Plus/Plus
Query 27 AAAGCAAAGTTTCATATTCCTAAAAATTCTGGT-TTTATAAGTATCAAAGACAAATTCAG 85
||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 1 AAAGCAAAGTTTCATATTCCTAAAAATTCAGGTATTTATAAGTATCAAAGATAAATTCAG 60
Query 86 TCTCCATGGAAATAGAGCAAAGAAGGATCATgaagagagaaggagaagaagaagaagaca 145
| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 61 TTTCCATGGAAATAGAGCAGCCAAAGATCATGAAGAGAGAAGGAGAAGAAGAAGAAGACA 120
Query 146 acaatcaactttcactgcaagaagaaga-accagatacagaggaagagaTGTCTGGGAGG 204
||||||| || |||||||| |||||| | |||||| ||||||||||||||||||||||||
Sbjct 121 ACAATCACCTGTCACTGCAGGAAGAA-ACACCAGAAACAGAGGAAGAGATGTCTGGGAGG 179
Query 205 ACAATCGAACCGTGGACGAAGCAGATAACGGTGAGAGGAGTGTTCGTGAGCATAGTGATC 264
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 180 ACAATCGAACCATGGACGAAGCAGATAACGGTGAGAGGAGTGTTAGTGAGCATAGTGATC 239
Query 265 GGAGTTGTGTTCAGTGTGATTGCTCAGAAGCTAAATCTCACGACAGGAATTGTTCCAAAT 324
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 240 GGAGTTGTGTTCAGTGTGATAGCTCAGAAGCTAAATCTCACGACAGGGATTGTTCCAAAT 299
Query 325 CTCAACAGCTCTGCAGCTTTACTTGCTTTTGTCTTTGTCCAGACTTGGACTAAGATTCTC 384
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 300 CTCAACAGCTCTGCAGCTTTACTGGCTTTTGTCTTTGTCCAGACTTGGACTAAGATTCTC 359
Query 385 AAGAAATCAGGATTTGTTGCGAAA-CCATTCACAAGACAAGAGAACACAATGATTCAGAC 443
||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct 360 AAGAAATCAGGATTTGTCGC-AAAGCCATTCACAAGACAAGAGAACACAATGATTCAGAC 418
Query 444 ATCTGCTGTTGCTTGTTACGGCATCGCTGTCGGAGGTGGGTTTGCTTCATATCTTCTGGG 503
|||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||
Sbjct 419 ATCTGCTGTTGCTTGTTACGGCATTGCGGTTGGAGGTGGGTTTGCTTCCTATCTTCTGGG 478
Query 504 GTTAAACCATAAGACATATGTGTTGTCTGGTGTGAACTTGGAAGGTAACTCTCCAAAGAG 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GTTAAACCATAAGACATATGTGTTGTCTGGTGTGAACTTGGAAGGTAACTCTCCAAAGAG 538
Query 564 TGTGAAAGAACCTGGCCTTGGTTGGATGACTGCTTATCTCTTTGTTGTCTGTTTCATCGG 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TGTGAAAGAACCTGGCCTTGGTTGGATGACTGCTTATCTCTTTGTTGTCTGTTTCATCGG 598
Query 624 TCTTTTTGTCCTAATCCCTCTCCGAAAGGTTATGATTGTTGACCTTAAATTAACATATCC 683
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCTTTTTGTTCTAATCCCTCTCCGAAAGGTTATGATTGTTGACCTTAAATTAACATATCC 658
Query 684 GAGTGGTTTAGCTACTGCGGTTCTCATCAATGGCTTCCACACACAAGGAGATGCACAGGC 743
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 659 GAGTGGTTTAGCTACTGCGGTTCTCATCAATGGCTTCCACACACAAGGAGATGCTCAAGC 718
Query 744 CAAGAAACAAGTGCGTGGTTTCATGAAATACTTCTCATTTAGTTTCTTGTGGGGTTTCTT 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CAAGAAACAAGTGCGTGGTTTCATGAAATACTTCTCATTTAGTTTCTTGTGGGGTTTCTT 778
Query 804 CCAGTGGTTTTTCTCTGGTATTGAAGATTGTGGCTTTGCTCAATTCCCAACCTTTGGTTT 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 779 CCAGTGGTTTTTCTCTGGTATTGAAGATTGTGGCTTTGCTCAATTCCCAACCTTTGGCTT 838
Query 864 GAAAGCTTGGAAACAAACGTTCTT-CTTTGATTTCAGCATGACATTTGTGGGAGCAGGAA 922
||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||
Sbjct 839 GAAAGCTTGGAAACAAACGTT-TTACTTTGATTTCAGCATGACATTTGTAGGAGCAGGAA 897
Query 923 TGATTTGTTCACATTTGGTTAACCTTTCTTTGCTTTTAGGAGCTATCCTCTCTTATGGCT 982
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 898 TGATCTGTTCACATTTGGTTAACCTTTCTTTGCTTTTAGGAGCTATACTCTCTTATGGCT 957
Query 983 TAATGTGGCCTCTTCTTGATAAACTTAAGGGCTCTTGGTTCCCTGATAATCTCGACGAAC 1042
||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 958 TAATGTGGCCTCTTCTTGATAAACTCAAAGGCTCTTGGTTCCCTGAGAATCTCGACGAAC 1017
Query 1043 ACAACATGAAGAGCATTTACGGCTACAAAGTCTTCTTATCCGTAGCTCTAATCCTCGGCG 1102
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1018 ACAACATGAAGAGCATATACGGTTACAAAGTCTTCTTATCCGTAGCTCTAATCCTCGGCG 1077
Query 1103 ACGGTCTTTACACTTTCGTTAAGATCCTCTTTGTGACCATTGCCAATGTCAACGCAAGAT 1162
|||||||||| |||||| |||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1078 ACGGTCTTTATACTTTCATTAAGATCATCTTTGTGACCATTGTCAATGTCAACGCAAGAT 1137
Query 1163 TGAAGAACAAACCTAATGATCTAGATGACGTAGGTCACAAGAAACAACGGAAAGATCTCA 1222
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1138 TGAAGAACAAACCTAATGATCTAGATGACGTGGGTCACAAGAAACAGCGGAAAGATCTCA 1197
Query 1223 AGGAAGATGAGAATTTCCTCAGAGATAAAATCCCAATGTGGTTCGCAGTTTCCGGATATC 1282
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1198 TGGAAGATGAGAATTTCCTCAGAGATAAAATCCCGATGTGGTTCGCAGTTGCCGGATATC 1257
Query 1283 TTACATTCGCTGCGGTCTCAACCGTCGTGGTTCCTCTGATATTTCCTCAGCTCAAATGGT 1342
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1258 TTACATTCGCTGCGGTCTCAACCGTCGTGATTCCTCTGATATTTCCTCAGCTAAAATGGT 1317
Query 1343 ATTACGTTATTGTAGCTTACATTTTCGCGCCTTCTCTGGCCTTCTGTAACGCTTATGGAG 1402
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1318 ATTACGTTATTGTAGCTTACATTTTCGCGCCTTCTCTCGCCTTCTGTAACGCTTATGGAG 1377
Query 1403 CTGGACTTACAGACATTAACATGGCTTATAACTACGGCAAAATTGGTCTTTTTGTCATCG 1462
|||||||||| |||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 1378 CTGGACTTACCGACATTAACATGGCTTATAACTACGGCAAAATCGGTCTTTTCGTTATCG 1437
Query 1463 CGGCTGTGACGGGAAGAGAGAACGGAGTTGTAGCCGGACTCGCCGGTTGTGGACTGATCA 1522
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1438 CTGCTGTGACGGGAAGAGAGAACGGAGTTGTAGCCGGACTGGCCGGTTGTGGACTGATCA 1497
Query 1523 AATCCGTTGTTTCGGTTTCTTGTATTTTGATGCAAGATTTCAAGACGGCTCATTACACGA 1582
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 AATCAGTTGTTTCGGTTTCTTGTATTTTGATGCAAGATTTCAAGACGGCTCATTACACGA 1557
Query 1583 TGACGTCACCTAAGGCTATGTTTGCTAGCCAAATGATTGGAACGGTCGTTGGATGCATCG 1642
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1558 TGACGTCACCTAAGGCTATGTTTGCTAGCCAAATGATTGGAACGGTTGTTGGATGCATCG 1617
Query 1643 TGACGCCGTTAAGTTTCTTTTTGTTCTACAAAGCGTTCGACATTGGAAACCCTAACGGAG 1702
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1618 TGACGCCGTTAAGTTTCTTCTTGTTCTACAAAGCGTTCGACGTTGGAAACCCTAACGGAG 1677
Query 1703 AATTCAAGGCTCCTTACGCTTTGATTTACAGAAATATGGCGATTCTTGGGGTGCAAGGCT 1762
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1678 AATTCAAGGCTCCTTACGCTTTGATTTACAGAAACATGGCGATTCTTGGGGTGCAAGGCT 1737
Query 1763 TCTCTGCTCTGCCTCTTCACTGTCTCCAAATGTGTTACGGGTTTTTCGGGTTTGCTGTTT 1822
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1738 TCTCTGCTCTGCCTCTTCACTGTCTCCAAATGTGTTACGCGTTTTTCGGCTTTGCTGTTT 1797
Query 1823 TGGTCAACGTCGTCAGAGATCTTACTCCGGCGAAGATTGGAAGATTCATGCCACTTCCGA 1882
||||||| |||||||| |||||||| ||||||||| |||| || |||||||| |||||||
Sbjct 1798 TGGTCAATGTCGTCAGGGATCTTACCCCGGCGAAGGTTGGGAGGTTCATGCCGCTTCCGA 1857
Query 1883 CGGCGATGGCTGTTCCGTTTCTTGTCGGAGCTTATTTCGCAATCGACATGTGTGTTGGGA 1942
|||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1858 CGGCTATGGCTGTTCCGTTTCTTGTCGGAGCTTATTTCGCGATTGACATGTGTGTTGGGA 1917
Query 1943 CTTTGATTGTGTTTGTTTGGGAGAAGATGAATCGGAAGAAAGCAGAGTTTATGGTTCCGG 2002
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 CTTTGATAGTGTTTGTTTGGGAGAAGATGAATCGGAAGAAAGCAGAGTTTATGGTTCCGG 1977
Query 2003 CGGTGGCTTCAGGGCTAATCTGTGGCGAAGGGCTTTGGACTTTACCTGCGGCGGTGCTTG 2062
| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1978 CAGTGGCTTCAGGGCTTATCTGCGGCGAAGGGCTTTGGACTTTACCTGCGGCGGTGCTTG 2037
Query 2063 CCCTCGCCGGAGTAAAACCTCCGATATGTATGAAGTTCTTAGCTTCATAGGATCAGTCAA 2122
| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2038 CACTCGCTGGAGTAAAGCCTCCGATATGTATGAAGTTCTTAGCTTCATAGGATCAGTCAA 2097
Query 2123 AGAGATAAGAAGACTTGTGAAGTTAGAGTACTTAGAAGACGTCAATGAT-ATTAAAATCA 2181
|||||||||||||||| ||| ||||||||| |||||||||||||| | | |||||| |||
Sbjct 2098 AGAGATAAGAAGACTTATGATGTTAGAGTAGTTAGAAGACGTCAAGGTTTATTAAACTCA 2157
Query 2182 TCCTATTCTTAGAATAACA-G--GTAGACTTCTGAACAAGAACATCTCTTCTTCTAGGAA 2238
||||||||||||||||||| | | ||||||||||||||||||||||||| || ||||||
Sbjct 2158 TCCTATTCTTAGAATAACAAGAAGAAGACTTCTGAACAAGAACATCTCTTTTTATAGGAA 2217
Query 2239 TTAAGACTAAAATCTACTTACATCCGGATGATTCATGCTCTGTTTTTTGGTTTGGTATAA 2298
|||||| ||||||||||||||||||||||||| | | || || | || ||| | |
Sbjct 2218 TTAAGAGTAAAATCTACTTACATCCGGATGAT-C-T--TC-GTGCTCTG-TTT--T-TGC 2268
Query 2299 TTTGTCAACACATCTAGATCTGTTCCATTTCCGGTTATC-------TTCTATTGGGTTAT 2351
|||||||||||||||||||||||| |||||||||||||| || |||||||| ||
Sbjct 2269 TTTGTCAACACATCTAGATCTGTTGCATTTCCGGTTATCAGCACACTTTTATTGGGT-AT 2327
Query 2352 CTCTGAAACT-GTTATGGGCTCGGCCCATAAATTTAAACC-T--TG-GT-G-T--AACAA 2402
|||||||| | |||||||||| ||||||||||||||||| | || || | | |||||
Sbjct 2328 CTCTGAAA-TAGTTATGGGCTTGGCCCATAAATTTAAACAATGGTGAGTTGGTGTAACAA 2386
Query 2403 AAA-GTAATAAAATCAGCTATTTAA 2426
| ||||||||| |||||||||||
Sbjct 2387 CATTGTAATAAAACCAGCTATTTAA 2411
> Ahg905429 jgi|Araly1|905429|Al_scaffold_0003_2557
Length=546
Score = 213 bits (115), Expect = 5e-54
Identities = 125/130 (96%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 148 aatcaactttcactgcaagaagaagaaccagatacagaggaagagaTGTCTGGGAGGACA 207
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 413 AATCAACAGTCACTGCAAGAAGAAGAACCAGAAACAGAGGAAGAGATGTCTGGGAGGACA 472
Query 208 ATCGAACCGTGGACGAAGCAGATAACGGTGAGAGGAGTGTTCGTGAGCATAGTGATCGGA 267
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 473 ATCGAACCGTGGACGAAGCAGATAACGGTGAGAGGAGTGTTAGTGAGCATAGCGATCGGA 532
Query 268 GTTGTGTTCA 277
||||||||||
Sbjct 533 GTTGTGTTCA 542
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91568948980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5