BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G24140.1 Length=1832 Score E Sequences producing significant alignments: (Bits) Value Ahg492449 jgi|Araly1|492449|fgenesh2_kg.7__1882__AT4G24140.1 2874 0.0 > Ahg492449 jgi|Araly1|492449|fgenesh2_kg.7__1882__AT4G24140.1 Length=1825 Score = 2874 bits (1556), Expect = 0.0 Identities = 1745/1834 (95%), Gaps = 22/1834 (1%) Strand=Plus/Plus Query 4 ATCTCCTAGTCTCAACTCTCAAATagagagagaaaaacagaaagacagagagagGTTCTA 63 |||| ||| ||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct 1 ATCTTCTATTCTCAACTCTCAAATAGAGAGAGAAAAGGAGACAGACAGAGAGAGGTTCTA 60 Query 64 TATATTATAGATAAAGTACATTACACAATTGTACAAGTGGAAAAAT-CATCACGGA--TC 120 |||||||| ||||||||||||||||||||||||| |||| | ||| ||||||||| || Sbjct 61 TATATTAT--ATAAAGTACATTACACAATTGTACAGGTGG-ACAATCCATCACGGATCTC 117 Query 121 TC-TC-----T-TCAAATATATAAAGAAGATTTGTATATCAAACTCTCTAAGCTTTTGTT 173 || || | ||||||||||||||||||||||| ||| ||||||||||||| |||||| Sbjct 118 TCTTCATATATCTCAAATATATAAAGAAGATTTGTGTATTAAACTCTCTAAGC-TTTGTT 176 Query 174 GAGCCATGGCTGTGATGAAGATAAAAGGAGCAGCGACCGTAGCAGGAACATGGCTGAACG 233 |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct 177 GAGCCATGGCTGTGATGAAGATAAGAGGAGCAGCGACCGTAGCAGGAACATGGCTAAACG 236 Query 234 AAGCCGTTAGCTTCGTCGTGTTCTGTATCTTAGACATCGTTGATTCATTTCTTTGTCTCC 293 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 237 AAGCCGTTAGCTTCGTCGTGTTCTGTGTCTTAGACATCGTTGATTCATTTCTTTGTCTCC 296 Query 294 TCTACAAAGCAGCTGATTATCTCTTCGAAGCCGAGTGGAAGCCTTGCTATTGCTTGTCGG 353 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 297 TCTACAAAGCAGCTGACTATCTCTTCGAAGCCGAGTGGAAGCCTTGCTATTGCTTGTCGG 356 Query 354 ACAAGGAACCCATCACCACAACTCGAGGGAAGATCCTTTTGTCTCACAATAATGGCGAGT 413 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 357 ACAAGGAACCCATCACGACAACTCGAGGGAAGATCCTTTTGTCTCACAATAATGGCGAAT 416 Query 414 CCAAGATCCTCACTCTTTCTCCGCTTCAAGAACTCGGCGGACGTTCCAAGATTGAGCTGG 473 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 417 CCAAGATCCTCACTCTTTCTCCGCTTCAAGAACTCGGTGGACGTTCCAAGATTGAACTGG 476 Query 474 AGGATATCTCCGAGACCCTTTACACACGTCCTTCTCTTATTTCCGACATCTC-AACCATC 532 ||||||||||||||||||||||||||||||||||||||||| ||||| |||| || |||| Sbjct 477 AGGATATCTCCGAGACCCTTTACACACGTCCTTCTCTTATTACCGACCTCTCTAA-CATC 535 Query 533 TCCGTTAACGAGCTCAATAAGCGGTTCGTTAAGGTTACTCGGTCAGAGTCTGAGTGTAGC 592 |||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| Sbjct 536 TCCGTTAACGAGCTCAATAAGCGGTTCGTTAAGGTTACTCGGTCGGAATCCGAGTGTAGC 595 Query 593 GGCCATAATGAGAAGACCAAGAACAAAAGGAGGAGATCATTAACGAAGTCAAGCTTGACG 652 |||||| |||||||||||||||||||||||||||||||| ||| ||||||||| |||||| Sbjct 596 GGCCATCATGAGAAGACCAAGAACAAAAGGAGGAGATCAGTAATGAAGTCAAGTTTGACG 655 Query 653 GTGAACTTCACGGTCGTTGAGATGCTTCGGGGAAAGATCAGACCGCAGAATTTGAACCAC 712 |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 656 GTGAACTTCACGGTCGTTGAGATGCTTCGGGGAAAGATCAGACCACAGAATTTGAGCCAC 715 Query 713 GATATCTCTCGATGGTCGGATTGTGATTGTGGGTTTTGTACATCGTGGGCCTCTACTTCT 772 |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 716 GATATCTCCCGATGGTCGGATTGTGATTGTGGCTTTTGTACATCGTGGGCCTCTACTTCC 775 Query 773 GACAAAAACCATTCCCTCTTTGTCAAAACTCAAATCCCAAATGGGGTAACAGCGAAAGAG 832 |||||| | |||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 776 GACAAAGATCATTCCCTCTTTGTCAAAACTCAAATCCCAAATGGGGTGACAGCCAAAGAG 835 Query 833 GATGTTCTTTTCATACATGGTTTCATATCTTCATCAGCGTTTTGGACGGAGACGGTGTTT 892 |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 836 GATGTTCTGTTCATACATGGTTTCATATCTTCATCAGCGTTTTGGACGGAGACAGTGTTT 895 Query 893 CCAAGCCTGTCAGCCTCCTCCTCGACTCATAGACTCTTCGCCGTGGATCTTCTAGGATTC 952 |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 896 CCAAGCCTGTCAGCTTCCTCATCGGCTCATAGACTCTTCGCCGTGGATCTTCTAGGATTC 955 Query 953 GGAAAGAGTCCAAAGCCAGCTGATTCACTCTACACGTTGAGAGAACACGTAGAGATGATC 1012 || |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 956 GGCAAGAGTCCAAAGCCAGCTGATTCACTCTACACGTTGAGGGAACACGTAGATATGATC 1015 Query 1013 GAGAAATCTGTCTTACACAAATACAATGTGAAGTCTTTCCACATCGTGGCTCACTCTTTG 1072 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1016 GAGAAATCTGTCTTACACAAACACAATGTGAAGTCTTTCCACATCGTGGCTCACTCTTTG 1075 Query 1073 GGATGCATTTTGGCGCTTAGCCTAGCCGCTAGACATGGCGGCTTAATCAAGTCGCTTACC 1132 |||||||||||||| ||||| || ||||||||||| ||| |||||||||||||||||||| Sbjct 1076 GGATGCATTTTGGCTCTTAGTCTCGCCGCTAGACACGGCAGCTTAATCAAGTCGCTTACC 1135 Query 1133 CTCCTTGCTCCGCCGTACTATCCAGTACCGAAGGGAGAGA-AAAAGCCGAGGCAGTACGT 1191 |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 1136 CTCCTTGCTCCGCCGTACTATCCAGTACCGAAGGGAGAGACGAAA-CCGAGGCAGTACGT 1194 Query 1192 GATGAAGAAGGTGGCGCCGAGGAAGGTTTGGCCACCAATAGCTCTCGGAGCGTCGATGGC 1251 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 1195 GATGAAGAAGGTGGCGCCGAGGAAGGTTTGGCCGCCAATAGCTCTAGGAGCGTCGATGGC 1254 Query 1252 TTGTTGGTACGAACACATTAGCCGTACCATTTGTCTCCTCATATGCAAACACCACCGTGT 1311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1255 TTGTTGGTACGAACACATTAGCCGTACCATTTGTCTCCTCATATGCAAACACCACCGTGT 1314 Query 1312 TTGGCAATTCATCGCCGGTGTCTTGACCCGAAACAACAGGACTGTAAACTTTTTAATTGA 1371 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 1315 TTGGCAATTCATCGCCGGTGTCTTGACCCGAAATAACAGGACTGTAAACTTTTTAATAGA 1374 Query 1372 AGGTTTCATGTGTCACACACACAACGCAGCATGGCATACTCTACATAACATTATATGTGG 1431 |||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||| Sbjct 1375 AGGTTTCATGTGTCACACGCACAACGCAGCGTGGCACACTCTACACAACATTATATGTGG 1434 Query 1432 GACAGGAAGCAAACTCGATACGTATCTAGACATCGTACGAGATAAACTAAAGTGCAACGT 1491 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1435 GACAGGAAGTAAACTCGATACGTATCTAGACATCGTACGAGATAAACTAAAGTGCAACGT 1494 Query 1492 GACCATCTTCCACGGAGGAGACGACGAACTCATCCCTGTCGAGTGTAGCTACAACGTTAA 1551 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1495 GACCATCTTCCACGGAGGAGACGACGAACTCATCCCTGTCGAGTGTAGCTACAACGTTAA 1554 Query 1552 ACAGCGAATTCCTCGGGCACGAGTTAAGGTTATTGAGCACAAAGATCATATCACTATGGT 1611 | |||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 1555 AGAGCGGATTCCTCGAGCACGAGTTAAGGTTATTGAGCACAAAGACCATATCACCATGGT 1614 Query 1612 CGTTGGCAGACAAGATGAGTTTGCCAGAGAGCTCCAAGAGATTTGGAAGACTTCTTCTTG 1671 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1615 CGTTGGCAGACAAGATGAGTTTGCCAGAGAGCTCCAAGAGATTTGGAAGACTTCTTCTTG 1674 Query 1672 CTAAAATTATGTTTGATGAGAGAACTTGTGATTTATTATGATTGTTCTATGTAATGGGTT 1731 |||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 1675 CTAAGATTATGTTTGATGAGAG--CTTGTGATTTATTATGATTGTTCTATGTAATGAGTT 1732 Query 1732 GGTAAAAATATTCTTA-AGAGTTTTATAATTACAAATTAAGGAAATCCTTATGTATCATG 1790 |||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||| Sbjct 1733 GGTAAAAATATTCTTATA-AGTTTTATCATTACAAATTAAGGAAATCCTTATGTATCATG 1791 Query 1791 AGATAATCCAGGAAATGGAGTATTAAATAATAAT 1824 |||||||||||||||||||||||||||||||||| Sbjct 1792 AGATAATCCAGGAAATGGAGTATTAAATAATAAT 1825 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68790982470 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5