BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24250.1
Length=1699
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945678 jgi|Araly1|945678|scaffold_701907.1 2370 0.0
> Ahg945678 jgi|Araly1|945678|scaffold_701907.1
Length=1491
Score = 2370 bits (1283), Expect = 0.0
Identities = 1393/1447 (96%), Gaps = 3/1447 (0%)
Strand=Plus/Plus
Query 45 TCTCCATCTTGGAGGTGCAGAAATGGCAGAAGCAAGGTCTGGTTCTCTTGAGTATACACC 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCCATCTTGGAGGTGCAGAAATGGCAGAAGCAAGGTCTGGTTCTCTTGAGTATACACC 60
Query 105 CACATGGGTCGTTGCGTTTATCTGTTTCATCATTGTTCTCTTATCTCTTCTCGCTGAACG 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CACATGGGTCGTTGCGTTTATCTGTTTCATCATTGTTCTCTTATCTCTTCTCGCTGAACG 120
Query 165 TGGTCTTCATCATCTTGGAAAGTGTCTGAAGCGTAGGCAACAAGATGCCTTGTTCGAAGC 224
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 121 TGGTCTTCATCATCTTGGAAAGTGTCTCAAGCGTAGGCAACAAGATGCCTTATTCGAAGC 180
Query 225 CTTGCAGAAACTCAAAGAAGAATTGATGCTTCTTGGATTTATCTCCCTGATGTTAACGGT 284
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTGCAGAAACTTAAAGAAGAACTGATGCTTCTTGGATTTATCTCCCTGATGTTAACGGT 240
Query 285 ATCTCAGGCCGCAATTCGGCATATCTGTGTCCCACCAGCTCTTGTAAACAACATGTTTCC 344
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 241 ATCTCAGGCCGCAATTCGGCATATCTGTGTACCACCAGCTCTTGTAAACAACATGTTTCC 300
Query 345 CTGTAAGAAGCCATTGGAGGAGCATCATGCGCCTAAATCATCTCATTCGATTATCAACAA 404
| ||||||||||||||||| ||||| |||| |||||||||||||||||| |||||| |||
Sbjct 301 CCGTAAGAAGCCATTGGAGAAGCATGATGCTCCTAAATCATCTCATTCGGTTATCATCAA 360
Query 405 TGCACGACATCTCCTTTCAACAGGAGAAAGTCCAGACCATTGTGCTGCCAAGGGGCAGGT 464
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 361 TGCACGACATCTCCTTTCAACAGGAGAAAGTCCAGACCATTGTGCTGCCAAGGGCCAGGT 420
Query 465 TCCATTAGTATCTGTGGAAGCGTTGCATCAACTCCATATCTTCATCTTTGTGCTAGCGGT 524
||| |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 421 TCCGTTAGTATCCGTGGAAGCTTTGCATCAACTCCATATTTTCATCTTTGTGCTAGCGGT 480
Query 525 TTTTCACGTCATCTTCTGCGCCTCAACCATGGTTCTTGGAGGAGCAAGAATACAACAATG 584
||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||
Sbjct 481 TTTTCACGTCATCTTCTGCGCATCAACAATGGTTCTTGGAGGAGCTAGGATACAACAATG 540
Query 585 GAAACATTGGGAGGATTGGTTCAAGAAACGTCCTTCTCAAAAGGGCACTACAAGGCGTGG 644
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAAGCATTGGGAGGATTGGTTCAAGAAACGTCCTTCTCAAAAGGGCACTACAAGGCGTGG 600
Query 645 TCAT-C--ATGCTCATGCTCACGAGTTATTCAGTGCAAATCACGAGTTCTTCGAGATGCA 701
|||| | |||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 601 TCATGCTCATGCTCATGCTCACGAGTTATTCAGTGCAAATTACGAGTTCTTCGAAATGCA 660
Query 702 TGCTGGAGGATTTTGGAGAAGATCTGTTGTCATCAGCTGGGTGAGATCATTCTTCAAGCA 761
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 661 TGCTGGAGGATTTTGGAGAAGATCTGTTGTCATCAGTTGGCTGAGATCATTCTTCAAGCA 720
Query 762 GTTTTATGGTTCTGTCACCAAATCAGAATACATAGCTCTGCGACAAGCATTCATCATGAG 821
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 721 GTTTTATGGTTCTGTCACCAAATCAGAATATATAGCTCTGCGACAAGCGTTCATCATGAG 780
Query 822 TCATTGCCGCACAAACCCATCATTTGATTTTCACAAGTACATGCTAAGAACACTGGAAAT 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TCATTGCCGCACAAACCCATCATTTGATTTTCACAAGTACATGCTAAGAACACTGGAAAT 840
Query 882 AGATTTCAAGAAAGTTGTGAGCATAAGTTGGTATCTATGGCTCTTTGTCGTCGTCTTTTT 941
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 841 AGATTTCAAGAAAGTTGTGAGCATAAGTTGGTATCTCTGGCTCTTTGTGGTCGTCTTTTT 900
Query 942 GCTGCTCAATGTTGGAGGATGGAACACTTACTTCTGGTTATCTTTCTTGCCTTTGATTTT 1001
|||||| |||||||||||||||||||| ||||||||||| |||||||||||| ||||| |
Sbjct 901 GCTGCTGAATGTTGGAGGATGGAACACCTACTTCTGGTTGTCTTTCTTGCCTCTGATTCT 960
Query 1002 GTTACTAATGGTGGGTGCCAAGTTGGAATATATAATAAGTAGCTTAGCTTTGGATGTTTC 1061
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 961 GTTACTAATGGTGGGTGCCAAATTGGAATATATAATAAGTAGCTTAGCTCTGGATGTTTC 1020
Query 1062 CGAGAAGCGAAGCCGCGCGGAAGAAGCAGTGATCACACCTTCTGATGAACTCTTTTGGTT 1121
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CGAGAAGCGAAACCGCGCGGAAGAAGCAGTGATCACACCTTCTGATGAACTCTTTTGGTT 1080
Query 1122 CCATAGGCCAGGCATTGTTCTCCAACTCATCCATTTCATTCTCTTTCAGAATTCATTTGA 1181
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1081 CCATAGGCCAGGCATTGTTCTCCAACTTATCCACTTCATTCTCTTTCAGAATTCATTTGA 1140
Query 1182 GATTGCTTTCTTCTTCTGGATTTTGTTCACATACGGAATACATTCATGTATCATGGAGAA 1241
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1141 GATTGCTTTCTTCTTCTGGATTTTGTTCACGTACGGAATACATTCATGTATCATGGAGAA 1200
Query 1242 ACTAGGCTACCTTATCCCAAGACTCGTCATGGGAGTGTTAGTCCAAGTGCTTTGCAGTTA 1301
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 ACTAGGCTTCCTCATCCCAAGACTCGTCATGGGAGTGTTAGTCCAAGTGCTTTGCAGTTA 1260
Query 1302 CAGCACATTACCACTATATGCCCTTGTTACACAAATGGGTAGCAAATTCAAGAAAGGGAT 1361
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1261 CAGCACATTACCACTGTATGCCCTTGTAACACAAATGGGTAGCAAATTCAAGAAAGGGAT 1320
Query 1362 ATTCGACAATGTAGTACAGTCCACACTGGAAGGATGGTTAGAAGATACGAGGAACAGAGG 1421
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1321 ATTCGACAATGTAGTACAGTCCACACTTGAAGGATGGTTAGAAGATACGAGGAACAAAGG 1380
Query 1422 CGAATCCACGAGCGAGGCTCATAGGATAGAGATGCAACCTACAACTCCTGAATCTTATAA 1481
|||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1381 AGAATCCACAAGCGAGGCTCATAGGATAGAGATGCAATCTACGACTCCTGAATCTTATAA 1440
Query 1482 TGTCCAA 1488
||| |||
Sbjct 1441 TGTTCAA 1447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63724979885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5