BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G24440.1 Length=696 Score E Sequences producing significant alignments: (Bits) Value Ahg945657 jgi|Araly1|945657|scaffold_701886.1 617 3e-176 > Ahg945657 jgi|Araly1|945657|scaffold_701886.1 Length=362 Score = 617 bits (334), Expect = 3e-176 Identities = 353/362 (98%), Gaps = 1/362 (0%) Strand=Plus/Plus Query 148 AGATCGTTGGGGAAGTAGAGAATGGCGACGTTTGAGCTGTACAGGAGATCGACGATCGGG 207 ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 2 AGATC-TTTGGGAAGTATAGAATGGCGACGTTTGAGCTGTACAGGAGATCGACGATCGGG 60 Query 208 ATGTGTCTGACGGAGACTTTGGACGAGATGGTTCAGAGCGGTACGCTGAGCCCTGAGCTA 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATGTGTCTGACGGAGACTTTGGACGAGATGGTTCAGAGCGGTACGCTGAGCCCTGAGCTA 120 Query 268 GCTATCCAAGTCCTTGTTCAATTTGACAAGTCCATGACTGAAGCTCTGGAGAGCCAAGTG 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GCTATCCAAGTCCTTGTTCAATTTGACAAGTCCATGACTGAAGCTCTGGAGAGCCAAGTG 180 Query 328 AAGACCAAGGTGTCCATCAAGGGACACCTGCACACTTACAGGTTCTGTGACAATGTCTGG 387 |||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 181 AAGACCAAGGTGTCTATCAAGGGGCACCTGCACACTTACAGGTTCTGTGACAACGTCTGG 240 Query 388 ACCTTCATATTACAGGACGCAATGTTCAAGAGTGACGATCGTCAAGAGAATGTGAGCCGG 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 ACCTTCATATTACAGGACGCAATGTTCAAGAGTGACGATCGTCAAGAGAATGTGAGCCGG 300 Query 448 GTGAAGATAGTGGCATGTGATTCCAAGCTGCTCACACAGTGAGATGCAAATTGTCTGCAG 507 ||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||| Sbjct 301 GTGAAGATAGTGGCATGTGATTCTAAGCTGCTCACACAGTGAGATGCAAATTCTCAGCAG 360 Query 508 GG 509 || Sbjct 361 GG 362 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25580477307 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5