BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G24440.1

Length=696
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg945657 jgi|Araly1|945657|scaffold_701886.1                        617    3e-176


> Ahg945657 jgi|Araly1|945657|scaffold_701886.1
Length=362

 Score =  617 bits (334),  Expect = 3e-176
 Identities = 353/362 (98%), Gaps = 1/362 (0%)
 Strand=Plus/Plus

Query  148  AGATCGTTGGGGAAGTAGAGAATGGCGACGTTTGAGCTGTACAGGAGATCGACGATCGGG  207
            ||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  2    AGATC-TTTGGGAAGTATAGAATGGCGACGTTTGAGCTGTACAGGAGATCGACGATCGGG  60

Query  208  ATGTGTCTGACGGAGACTTTGGACGAGATGGTTCAGAGCGGTACGCTGAGCCCTGAGCTA  267
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ATGTGTCTGACGGAGACTTTGGACGAGATGGTTCAGAGCGGTACGCTGAGCCCTGAGCTA  120

Query  268  GCTATCCAAGTCCTTGTTCAATTTGACAAGTCCATGACTGAAGCTCTGGAGAGCCAAGTG  327
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GCTATCCAAGTCCTTGTTCAATTTGACAAGTCCATGACTGAAGCTCTGGAGAGCCAAGTG  180

Query  328  AAGACCAAGGTGTCCATCAAGGGACACCTGCACACTTACAGGTTCTGTGACAATGTCTGG  387
            |||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct  181  AAGACCAAGGTGTCTATCAAGGGGCACCTGCACACTTACAGGTTCTGTGACAACGTCTGG  240

Query  388  ACCTTCATATTACAGGACGCAATGTTCAAGAGTGACGATCGTCAAGAGAATGTGAGCCGG  447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  241  ACCTTCATATTACAGGACGCAATGTTCAAGAGTGACGATCGTCAAGAGAATGTGAGCCGG  300

Query  448  GTGAAGATAGTGGCATGTGATTCCAAGCTGCTCACACAGTGAGATGCAAATTGTCTGCAG  507
            ||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||
Sbjct  301  GTGAAGATAGTGGCATGTGATTCTAAGCTGCTCACACAGTGAGATGCAAATTCTCAGCAG  360

Query  508  GG  509
            ||
Sbjct  361  GG  362



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25580477307


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5