BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G24460.1 Length=1434 Score E Sequences producing significant alignments: (Bits) Value Ahg492400 jgi|Araly1|492400|fgenesh2_kg.7__1833__AT4G24460.1 1978 0.0 > Ahg492400 jgi|Araly1|492400|fgenesh2_kg.7__1833__AT4G24460.1 Length=1323 Score = 1978 bits (1071), Expect = 0.0 Identities = 1235/1311 (94%), Gaps = 23/1311 (2%) Strand=Plus/Plus Query 2 ATGGATACCGTTCTCATGGCTACAACACCACCAATCAGATGTCTTCATGCTTCAATTCCT 61 |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 1 ATGGATACCGTTCTCATGGCTACAACACAACCAATCAGATGTCTTCATGCTTCGATTCCT 60 Query 62 ACGGTGTTC-CGTTCGCCGGCGATTTATCAGGTCAGCTGCCGGAGCTCCCA-ACTGTTTT 119 ||||| || |||||||||||||||||||||||||||| ||| |||| | | ||| || | Sbjct 61 ACGGT-ATCTCGTTCGCCGGCGATTTATCAGGTCAGCTACCGTAGCT-CAAGACTCTTGT 118 Query 120 CCTACCGTTCGACGACTATGATGAGCAT-GTGTTTTCTCAGACGGTCCGATTTGAGATCT 178 ||||||| |||||||| | |||||| | ||||||||||||||||||||||||||||||| Sbjct 119 CCTACCGATCGACGAC--T-ATGAGC-TCGTGTTTTCTCAGACGGTCCGATTTGAGATCT 174 Query 179 CGCTTT-CTTAGTACTCCGAAAACCACTTCTCCGATGAGACGACCTCGCTTTTCCGTCGG 237 || ||| ||||||||| |||| ||||||||||| | | ||||||||||| Sbjct 175 CG-TTTCCTTAGTACT---------ACTTTTCCGATGAGAC-A--TGGCTTTTCCGTCAA 221 Query 238 TGCTTCTACGGAGGAGTCTTCAATTCCTTCTAATCGGAACCTTATCGTGGCTAACTCCGT 297 |||||| |||||| ||||| ||||||||||||||||||||| ||| |||| ||||||||| Sbjct 222 TGCTTCGACGGAGCAGTCTACAATTCCTTCTAATCGGAACCATATTGTGGTTAACTCCGT 281 Query 298 CGTAATCGTAGCTTTAGCTGTAGCTAATCGCGTGCTCTACAAACTCGCTTTGGTTCCCAT 357 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 282 CGTCATCGTAGCTTTAGCTGTAGCTAATCGCGTGCTCTACAAACTCGCCTTGGTTCCCAT 341 Query 358 GAAACAGTACCCTTTTTTCATGGCTCAGCTCACCACTTTCGGCTACGTCTTGATTTATTT 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 342 GAAACAGTACCCTTTTTTCATGGCTCAGCTCACCACTTTCGGCTACGTCTTGATTTATTT 401 Query 418 CACCATTCTGTATACGAGGCGCCGTCTAGGCATTGTGACGAATGAAATGATGGATGTACC 477 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct 402 CACCATTCTGTATACGAGGCGCCGTCTAGGCATTGTGACAAATGAAATGATGGCTGTACC 461 Query 478 CAAATGGAGATTCGCAATCATTGGTTTTCTCGAAGCTCTTGGTGTTGCCACTGGCATGGC 537 |||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||| Sbjct 462 CAAATGGAGATTCGCAATCATTGGTTTTCTTGAAGCTATTGGAGTTGCCACTGGCATGGC 521 Query 538 TGCAGCAGCAATGCTTCCTGGACCAGTTATACCCATTTTGAATCAGACATATTTGGTGTG 597 ||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 522 TGCAGCAGCCATGCTTCCTGGACCAGTTATACCCATTTTGAATCAGACGTTTTTGGTGTG 581 Query 598 GCAGCTGCTTTTTGCTCTTCTTATTTTAGGCAGGAGGTTTTTGCTTAACCAAATTGCTGG 657 ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 582 GCAGCTGCTTTTTGCTCTTCTTATTTTGGGCAGGAGCTTTTTGCTTAACCAAATTGCTGG 641 Query 658 TTGTCTCCTTGTGGCTGTGGGGGTTGTGGTGGCTGTTTCAAGTGGATCTGGTGCAGATAC 717 |||| | |||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 642 TTGTTTTCTTGTGGCTGTGGGCGTTGTGGTGTCTGTTTCAAGTGGATCTGGTGCAGATAC 701 Query 718 TACGCTATCTGGAATCGGTTTCTTATGGCCTGCTGTATTGGTAGCATCCGCTGCTTTTCA 777 |||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 702 TACGCTATCTGGTATTGGTTTCTTATGGCCTGCTGTATTGGTAGCATCTGCTGCTTTTCA 761 Query 778 AGCTGGTGCATCTATCATAAAGGAATTTGTTTTCAATGATGCTGCAAAGCGTCTTGAGGG 837 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 762 AGCTGGTGCATCTATCATAAAGGAATTTGTTTTCAATGATGCTGCAAAGCGTCTTGAGGG 821 Query 838 AAAGTCACTGGATATATTTGTGGTAAATTCATTTGGATCTGGATTTCAGGCTCTTTTTGT 897 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 822 AAAGTCACTGGATATATTTGTGGTAAATTCATTTGGATCTGGATTTCAGGCTCTTTTCGT 881 Query 898 GTTCCTGTTGTTGCCTTTTCTCTCAAACTTGAAAGGCATTCCATTCGCCAGCCTTCCTTC 957 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 882 GTTCCTGTTGTTGCCTTTTCTCTCAAACTTGAAAGGCATTCCATTCGCCAGCCTTCCTTC 941 Query 958 ATATCTAAAAGATGGTGCCGGATGCTTCTTCAACACTGGAGCTAAGATTTCTGGCTGTGA 1017 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 942 GTATCTAAAAGATGGTGCCGGCTGCTTCTTCAACACTGGAGCTAAGATTTCTGGCTGTGA 1001 Query 1018 TGGTGCCCCTATACTCCCACTGCTCTATATATCCACCAATCTCGCTTTCAACATCTCATT 1077 ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 1002 TGGTGCCCCTATACTCCCACTACTCTATATAGCCACCAATCTCGCTTTCAACATCTCATT 1061 Query 1078 GCTCCATCTGGTGAAAATATCTTCAGCAATCGTTTCCTCTCTTACCATGATGCTCTCAGT 1137 ||| |||||||||||||||||||| ||||||||||||||||| | ||||||||||||| Sbjct 1062 GCTTCATCTGGTGAAAATATCTTCGGCAATCGTTTCCTCTCTCGCTGTGATGCTCTCAGT 1121 Query 1138 GCCATTAGCGGTGTACATAATGTCAAAACCATTGCCGTATCTACCGGGAGGATCAAGCTT 1197 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1122 GCCATTATCGGTGTACATAATGTCAAAACCATTGCCGTATCTACCGGGAGGATCAAGCTT 1181 Query 1198 GAGCTCAAATTTTACGATGGGGTGTATAGTTCTTGTCCTAGGTCTTCTTCTCTACAACAT 1257 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1182 GAGCTCAAATTTCACGATGGGGTGTATAGTTCTGGTCCTAGGTCTTCTTCTCTACAACAT 1241 Query 1258 TCCCACTACTCCAACTAAACAACACACCAAGACCTCCTAACACACTCACTC 1308 ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1242 TCCCACTACTCCAACTAAACAACACACCAAGACCTCCTAACACACTCTCTC 1292 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53631064960 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5