BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G24510.1 Length=1565 Score E Sequences producing significant alignments: (Bits) Value Ahg492392 jgi|Araly1|492392|fgenesh2_kg.7__1825__AT4G24510.1 2032 0.0 > Ahg492392 jgi|Araly1|492392|fgenesh2_kg.7__1825__AT4G24510.1 Length=1450 Score = 2032 bits (1100), Expect = 0.0 Identities = 1353/1472 (92%), Gaps = 29/1472 (2%) Strand=Plus/Plus Query 1 AAAGACCCAAATCCCACCCACATTTAATGTTGCCGTCACGGAAACAGTTTTCCCAACTGT 60 ||| |||||||||||||| ||||||||||||| |||||| ||||| ||| || ||||||| Sbjct 1 AAACACCCAAATCCCACCTACATTTAATGTTGTCGTCACCGAAACTGTTGTCTCAACTGT 60 Query 61 CCTAAATCAGTGATACCCATGCCTATTCTGAACTCAACTCTCTTTCGAAACTCAATCCTT 120 |||||| ||||||||||||| ||||||||||||||||| |||||| ||||||||| ||| Sbjct 61 CCTAAACCAGTGATACCCATAACTATTCTGAACTCAACTTTCTTTCCAAACTCAATTCTT 120 Query 121 ATATAACACATCCCATTTAAGCCTATAAGCTACACATATCAGCTCTCTCACAAA-AATAA 179 ||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || || Sbjct 121 ATATAACACATCCCATTTAAGCCTATAAGCTACACATATCAGCTCCCTCAGAAAGAA-AA 179 Query 180 AATGGAGGGAAGCCCAGTGACCAGTGTCAGGCTCTCTTCGGTGGTGCCTGCTTCTGTGGT 239 ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 180 AATGGAGAGAAGCCCAGTGACCAGTGCCAGGCTCTCTTCGGTGGTGCCTGCTTCTGTGGT 239 Query 240 AGGTGAGAACAAGCCACGACAGCTCACACCCATGGACTTAGCCATGAAGCTCCACTACGT 299 ||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 240 AGGCGAGAACAAGCCACGACTGTTCACACCCATGGACTTAGCCATGAAGCTCCACTACGT 299 Query 300 CCGAGCCGTCTACTTCTTCAAGGGTGCACGTGACTTCACTGTCGCCGACGTGAAGAACAC 359 |||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 300 CCGAGCTGTCTACTTCTTCAAGGGTATACGTGACTTCACTGTCGCCGAATTGAAGAACAC 359 Query 360 CATGTTTACTCTACAGTCTCTACTCCAATCTTATCACCACGTCTCAGGTCGGATCCGGAT 419 |||| | | | | |||||||||| |||||||||||||||||||||||||||||||| Sbjct 360 CATG--T--T-T--A--CTCTACTCCAGTCTTATCACCACGTCTCAGGTCGGATCCGGAT 410 Query 420 GTCCGACAACGACAACGACACTTCAGCTGCAGCCATACCTTACATTCGCTGCAACGACAG 479 ||||||||||| | | |||||||| | ||||||||||||||||||||||||||||| Sbjct 411 GTCCGACAACG---A--TC-CTTCAGCTCCTGCCATACCTTACATTCGCTGCAACGACAG 464 Query 480 TGGCATACGCGTGGTCGAGGCCAACGTCGAAGAGTTCACAGTGGAGAAGTGGCTCGAGTT 539 |||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 465 TGGCATGCGCATCGTCGAGGCCAACGTCGAAGAGTTCACAGTGGAGAAGTGGCTCGACTT 524 Query 540 GGACGACCGTTCCATTGACCACCGATTCCTTGTCTACGATCACGTTCTTGGTCCTGATCT 599 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 525 GGACGACCGTTCCATTGACCACCGGTTCCTTGTCTACGATCACGTTCTTGGTCCTGATCT 584 Query 600 TACCTTCTCGCCACTCGTTTTCCTCCAGATAACTCAGTTTAAATGTGGTGGGCTCTGTAT 659 ||||||||| ||||| |||||| |||||||||||||||||||||||||||| |||| ||| Sbjct 585 TACCTTCTCTCCACTTGTTTTCGTCCAGATAACTCAGTTTAAATGTGGTGGTCTCTCTAT 644 Query 660 TGGGTTGAGTTGGGCCCATATTCTTGGAGACGTGTTTTCAGCATCAACGTTCATGAAAAC 719 ||||||||||||||||||| |||| ||||| | ||||||||| |||| ||||||||||| Sbjct 645 TGGGTTGAGTTGGGCCCATGTTCTAGGAGATTTATTTTCAGCAGCAACTTTCATGAAAAC 704 Query 720 ACTTGGACAGCTGGTATCGGGTCATGCCCCAACAAAACCGGTTTACCCGAAAACCCCCGA 779 ||||||||||||| | || ||||||| ||||||||||| |||||||||| ||||||| || Sbjct 705 ACTTGGACAGCTGATGTCAGGTCATGGCCCAACAAAACTGGTTTACCCGGAAACCCCTGA 764 Query 780 ACTAACCTCTCATGCTCGTAATGATGGTGAAGCTATTTCCATTGAAAAGATAGATTCGGT 839 ||| ||||||||||||| || ||||||||||||||||||||||||||||||| ||||| Sbjct 765 ACTGACCTCTCATGCTC---ATAATGGTGAAGCTATTTCCATTGAAAAGATAGAATCGGT 821 Query 840 TGG-CGAGTATTGGTTACTTACCAATAAATGCAAGATGGGGAGACACATTTTTAATTTTA 898 ||| | |||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| Sbjct 822 TGGTC-AGTATTGGTTACTTACAAATAAATGCAAGATGGGAAGATACATTTTTAATTTTA 880 Query 899 GCCTCAACCACATTGATAGCTTGATGGCCAAGTACACCACGCGAGACCAACCTTTCTCGG 958 |||||||||| |||||| | |||||||||||||||||||| ||||||||||||||||||| Sbjct 881 GCCTCAACCAAATTGATCGTTTGATGGCCAAGTACACCACACGAGACCAACCTTTCTCGG 940 Query 959 AGGTTGATATTTTGTATGCATTGATATGGAAGTCGCTACTGAATATCCGCGGCGAAACAA 1018 |||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||| Sbjct 941 AGGTTGATATTTTGTATGCATTGATATGGAAGGCCCTACTGAATATCCGCGGCAAAACAA 1000 Query 1019 ACACGAATGTTATAACAATTTGTGACCGTAAAAAGTCTTCAACCTGTTGGAACGAGGACT 1078 |||| ||||||||||||||||||||||||||||| ||||||||||||||||| || |||| Sbjct 1001 ACACAAATGTTATAACAATTTGTGACCGTAAAAAATCTTCAACCTGTTGGAATGACGACT 1060 Query 1079 TGGTAATAAGCGTAGTGGAAAAGAATGACGAAATGGTTGGGATATCCGAACTAGCTGCAC 1138 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 1061 TGGTAATAAGCATAGTGGAAAAGAATGACGAAATGATTGGGATATCCGAACTAGCTGCCC 1120 Query 1139 TGATTGCTGGTGAAAAAAGAGAAGAAAACGGTGCGATCAAGAGGATGATAGAACAAGATA 1198 |||| || ||||||||||||||||||||||||| |||||||||||| |||||| |||||| Sbjct 1121 TGATCGCGGGTGAAAAAAGAGAAGAAAACGGTGTGATCAAGAGGATAATAGAAGAAGATA 1180 Query 1199 AAGGCTCTTCGGATTTTTTCACGTACGGTGCAAATTTAACGTTTGTGAATCTTG--ATGA 1256 |||| ||||| |||||| |||||||||||||||||||||||||||||||||||| ||| Sbjct 1181 AAGGGTCTTCAGATTTTATCACGTACGGTGCAAATTTAACGTTTGTGAATCTTGACATG- 1239 Query 1257 AATAGATATGTATGAACTTGAGATCAACGGAGGGAAGCCGGATTTCGTAAACTACACGAT 1316 ||||||||||||||| |||||||||| || |||||||| |||||||||||||||||||| Sbjct 1240 -ATAGATATGTATGAAATTGAGATCAAAGGGGGGAAGCCAGATTTCGTAAACTACACGAT 1298 Query 1317 TCATGGGGTCGGAGACAAAGGTGTTGTTTTGGTTTTTCCCAAGCAAAACTTTGCAAGGAT 1376 ||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1299 TCATGGGGTTGGGGACAAAGGTGTTGTTTTGGTTTATCCCAAGCAAAACTTTGCAAGGAT 1358 Query 1377 TGTAAGTGTAGTGATGCCTGAAGAAGACCTTGCAAAACTCAAGGAGGAGGTGACTAATAT 1436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1359 TGTAAGTGTAGTGATGCCTGAAGAAGACCTTGCAAAACTCAAGGAGGAGGTGACTAATAT 1418 Query 1437 GATTATATAACTTTGT---ATCTTCTTCTTGT 1465 |||||| ||||||||| ||||| ||||||| Sbjct 1419 GATTATGTAACTTTGTTGTATCTTGTTCTTGT 1450 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58620887055 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5