BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24660.1
Length=895
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492376 jgi|Araly1|492376|fgenesh2_kg.7__1809__AT4G24660.1 1253 0.0
> Ahg492376 jgi|Araly1|492376|fgenesh2_kg.7__1809__AT4G24660.1
Length=907
Score = 1253 bits (678), Expect = 0.0
Identities = 844/918 (92%), Gaps = 35/918 (4%)
Strand=Plus/Plus
Query 2 TACTCTTAACTCTCATGAATTATTGGTCTCTCTATTATAGTTTTTTAAGTAACAATCTAA 61
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 TACTCTTAACTCTCATGAATTATTGGTCTCTCTATAATAGTTTTTTAAGTAACAATCTAA 60
Query 62 TTGTAGTACGGATGTCTCTTGAGATGTTCAAGAATTAAGAAATAAAGAAAGAGGGATCGG 121
| | ||||||||||||||||||||||| |||||||||| |||||||||||| | ||
Sbjct 61 -T-T-GTACGGATGTCTCTTGAGATGTTGAAGAATTAAG-AATAAAGAAAGA--G---GG 111
Query 122 AGAATGAATTTTGAGGATCAAGAAGAAGATATGGAGATGTCAGGTGTTAATCCCCCCTGC 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 112 AGAATGAATTTTGAGGATCAAGAAGAAGATATGGAGATGTCAGGTGTTAATCCCCCCGGC 171
Query 182 GGTTACGACTCTCTAAGCGGTGAGGGAGCCACATCTA---GTGGTGGTGGAGGAGTAGGA 238
|||||||||||||| ||||| ||||||||||| |||| | || |||||||||| ||||
Sbjct 172 GGTTACGACTCTCTGAGCGGCGAGGGAGCCACGTCTAGCGGCGGCGGTGGAGGAGGAGGA 231
Query 239 AGGAGTAAAGGAGTTGGAGCGAAGATAAGGTATAGAGAGTGCTTGAAGAACCATGCTGTT 298
|||| |||||||||||||| |||| | ||||||||||||||||||||||| |||||||||
Sbjct 232 AGGAATAAAGGAGTTGGAGGGAAGTTGAGGTATAGAGAGTGCTTGAAGAATCATGCTGTT 291
Query 299 AACATAGGTGGCCACGCCGTGGACGGTTGTTGCGAGTTTATGCCTTCCGGTGAAGATGGA 358
||||| || |||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 292 AACATCGGCGGCCACGCCGTGGACGGTTGCTGTGAGTTCATGCCTTCCGGTGAAGATGGT 351
Query 359 ACGCTCGACGCTCTTAAGTGTGCAGCTTGCGGCTGCCACCGCAACTTCCACCGCAAGGAA 418
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 352 ACGCTCGACGCTCTCAAGTGTGCAGCTTGTGGCTGCCACCGCAACTTCCACCGCAAGGAA 411
Query 419 ACCGAAAGCATCGGCGGTAGAGCCCACAGAGTTCCCACGTACTACAACCGCCCGCCGCAG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 ACCGAAAGCATCGGCGGTAGAGCCCACAGAGTTCCCACGTACTACAACCGCCCGCCGCAG 471
Query 479 CCGCATCAGCCGCCTGGATATCTTCATCTAACATCTCCC--G-C----GG-C-GCCT-TA 528
||||||||||||||||||||||||||||||||||||||| | | || | |||| ||
Sbjct 472 CCGCATCAGCCGCCTGGATATCTTCATCTAACATCTCCCACGGCTACAGGGCAGCCTATA 531
Query 529 CAGGCCACCCGCGGCATCGGGGGACGAGGAGGATACATCAAATCCTAGCAGCAGCGGCGG 588
||||| |||| ||| || | |||||||||||||||||| ||||| ||||||||||||||
Sbjct 532 -AGGCCGCCCGTGGCGTCCGCGGACGAGGAGGATACATCGAATCCGAGCAGCAGCGGCGG 590
Query 589 GACCAC-G-AA-GAGGTTTAGAACGAAGTTCACGGCGGAACAGAAAGAGAAGATGTTAGC 645
|||||| | || |||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 591 GACCACCGCAAAGAGGTTTAGAACAAAGTTCACGGCGGAGCAGAAGGAGAAGATGTTAGC 650
Query 646 CTTTGCGGAGAGGTTGGGGTGGAGAATTCAGAAGCATGATGACGTGGCGGTTGAGCAGTT 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 CTTTGCGGAGAGGTTGGGGTGGAGAATTCAGAAGCATGATGACGTGGCGGTTGAGCAGTT 710
Query 706 CTGTGCGGAGACTGGTGTTAGGAGACAAGTGCTTAAAATCTGGATGCATAACAACAAGAA 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 CTGTGCGGAGACTGGTGTTAGGAGACAAGTGCTTAAAATCTGGATGCATAACAACAAGAA 770
Query 766 CTCTCTTGGTAAGAAACCCTAATTTTGCTCGAGACATGATTTAAAACACTAGAGGATCAT 825
||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||
Sbjct 771 TTCTCTTGGTAAGAAACCCTAATTTTACTCAAGATATGATTTAAAACACTAGAGGATCAT 830
Query 826 AATTG--------TTTCtttttttGGTATGACTCTTCTGTAACTACTTCTGCTTATTAGT 877
||||| |||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 831 AATTGGCAAGAAATTTCTTTTTT-GGTATGACTCTTCTGTAACTACTTCTGCTTATCAGT 889
Query 878 TATGTTATTTTTTCCTGG 895
| |||| |||||||||||
Sbjct 890 TGTGTTCTTTTTTCCTGG 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33166937790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5