BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24770.1
Length=1271
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492365 jgi|Araly1|492365|fgenesh2_kg.7__1798__AT4G24770.1 1173 0.0
> Ahg492365 jgi|Araly1|492365|fgenesh2_kg.7__1798__AT4G24770.1
Length=1179
Score = 1173 bits (635), Expect = 0.0
Identities = 736/785 (94%), Gaps = 6/785 (1%)
Strand=Plus/Plus
Query 488 gaaggagcTGTGAGCGAAAGAGCTGAGTTCCCGGAGCCATCGGAAGAAGCCAAGCTTTTC 547
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 400 GAAGGAGATGTGAGCGAAGGAGCTGAGTTCCCGGAGCCATCGGAAGAAGCCAAGCTTTTC 459
Query 548 GTCGGAAATTTGGCTTATGATGTTAATAGCCAAGCTTTGGCTATGCTCTTTGAGCAAGCC 607
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 460 GTCGGAAATTTGGCTTATGATGTTGATAGCCAAGCCTTGGCTATGCTCTTTGAGCAAGCC 519
Query 608 GGTACTGTTGAAATCGCCGAGGTTATATACAATAGGGAAACTGACCAGAGTCGTGGGTTT 667
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 GGTACTGTTGAAATCGCTGAGGTTATATACAATAGGGAAACTGACCAGAGTCGTGGGTTT 579
Query 668 GGATTTGTGACAATGAGTTCTGTGGACGAAGCTGAGACAGCTGTGGAGAAGTTCAACCGT 727
||||||||||| |||||| | ||||| ||||||||||||||||| |||||||||||||||
Sbjct 580 GGATTTGTGACTATGAGTACCGTGGAAGAAGCTGAGACAGCTGTCGAGAAGTTCAACCGT 639
Query 728 TATGATCTTAACGGACGTCTACTAACTGTAAACAAGGCAGCTCCAAGAGGATCACGTCCA 787
|||||||| ||||||||||| || || || ||||||||||||||||||||||||||||||
Sbjct 640 TATGATCTGAACGGACGTCTTCTGACGGTTAACAAGGCAGCTCCAAGAGGATCACGTCCA 699
Query 788 GAACGTGCGCCTCGGGTATATGAACCTGCATTCAGAGTATATGTAGGGAATCTACCATGG 847
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 700 GAACGTGCACCTCGGGTATATGAACCTGCATTCAGAGTCTATGTAGGGAATCTACCATGG 759
Query 848 GATGTGGACAATGGCCGTCTAGAACAGCTTTTCAGTGAGCATGGTAAAGTTGTGGAAGCT 907
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 760 GATGTGGACAATGGCCGTCTAGAACAGGTTTTCAGCGAGCATGGTAAAGTTGTGGAAGCT 819
Query 908 AGGGTGGTTTACGACCGTGAGACAGGTCGTTCACGTGGATTCGGGTTTGTCACAATGTCT 967
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 820 AGGGTGGTTTACGACCGTGAGACAGGTCGTTCACGTGGATTCGGGTTCGTCACAATGTCT 879
Query 968 GACGTGGATGAACTCAACGAAGCCATCTCTGCCCTCGATGGACAGAACTTGGAGGGTAGA 1027
||| | ||||||||||||| |||||| |||| || |||||||||||| |||||||||||
Sbjct 880 AACGAGAATGAACTCAACGACGCCATCGCTGCTCTTGATGGACAGAACATGGAGGGTAGA 939
Query 1028 GCAATCAGAGTGAATGTAGCGGAAGAGCGTCCTCCAAGGCGTGGATATTAAAGCTGAGAT 1087
|||||||||||||||||||| || ||||| | ||| ||||||||| |||||||||||||
Sbjct 940 GCAATCAGAGTGAATGTAGCAGAGGAGCG--C-CCACGGCGTGGATTTTAAAGCTGAGAT 996
Query 1088 CTAGCTGTGCCCTCTCTCTCTCCCTATCTTGCATTTTGTTTAGACGAGATTCTTACACTC 1147
| ||||| || |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 997 TTCTCTGTG-CC-CTCTCTCTCCCTCTCTTGCATTTTGTTTAGACGAGATTCTTACACTC 1054
Query 1148 TTCAACGATTGTTTTTGGCTGAACTCTGAATGTGAAAGTTAAGCTGCTTCTAAAGTAATT 1207
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1055 TTCAACGATTGTTTTTGGCTGAACTCTGAATGTGAAAGTTAAGCTTCTTCTAAAGTAATA 1114
Query 1208 TGTATCGCTT-GTTTTTGATGATCTCTTATTCATAGTTTAATTCCTAATTGTTGGAGTTT 1266
|||||||||| | ||||||||||||||||||||||||| || ||||||||||||| |||
Sbjct 1115 TGTATCGCTTCGCTTTTGATGATCTCTTATTCATAGTTAAAATCCTAATTGTTGGCGTTC 1174
Query 1267 CATTC 1271
|||||
Sbjct 1175 CATTC 1179
Score = 549 bits (297), Expect = 2e-155
Identities = 359/387 (93%), Gaps = 12/387 (3%)
Strand=Plus/Plus
Query 57 cttccacttcttctatctctcacaattcagcaatggcttcttctATAGTTACCTCTAGCT 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 38 CTTCCACTTCTTCTATCTCTCACAATTCAGCAATGGCTTCTTCTATAGTTACCTCTAGCT 97
Query 117 TGAAGCCTTTAGCCATGGCCGAttcttcctcttctaccattttctcccatccttccatct 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 98 TGAAGCCTTTAGCCATGGCCGATTCTTCCTCTTCTACCATTTTCTCCCATCCTTCCATCT 157
Query 177 cctctaccatctcttcctccaGAATTCGCAGCTCCAGTGTTTCCCTCCTTACCGGACGCA 236
||||| ||||||||||||||||||||||| |||||| |||||| ||||| || |||| ||
Sbjct 158 CCTCTTCCATCTCTTCCTCCAGAATTCGCTGCTCCAATGTTTCACTCCTCACGGGACACA 217
Query 237 TTAACCTGCCCctctctttctctcgc-------g-t-ctctctatctctTAAAACCAAAA 287
|||||||||||||||||||||||||| | | |||||||||||| ||| ||||||
Sbjct 218 TTAACCTGCCCCTCTCTTTCTCTCGCTTCTCTCGCTTCTCTCTATCTCTCAAATCCAAAA 277
Query 288 CCCACCTTAAAAAATCCCCCTTTGTCTCCTTCGTTGCCCAGACTTCGGATTGGGCTGAAG 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 278 CCCACCTTAAAAAATCCCCCTTTGTCTCCTTCGTTGCCCAGACTTCGGATTGGGCTGAAG 337
Query 348 AAGGTGGAGAAGGAAGCGTCGCTGTTGAGGAGACCGAGAACAGTTTAGAGTCACAAGATG 407
||||||| |||||||||||||| |||||||||| |||| ||||||| |||||||||||||
Sbjct 338 AAGGTGGGGAAGGAAGCGTCGCCGTTGAGGAGAACGAGGACAGTTTCGAGTCACAAGATG 397
Query 408 tgagcgaaggagatgagagcgaaggag 434
| | ||||||||| |||||||||||
Sbjct 398 -GTG--AAGGAGATGTGAGCGAAGGAG 421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47501154582
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5