BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24810.2
Length=1725
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492357 jgi|Araly1|492357|fgenesh2_kg.7__1790__AT4G24810.2 2479 0.0
Ahg497506 jgi|Araly1|497506|fgenesh2_kg.664__1__AT5G50330.1 1280 0.0
Ahg495093 jgi|Araly1|495093|fgenesh2_kg.8__909__AT5G50330.1 1280 0.0
Ahg900634 jgi|Araly1|900634|Al_scaffold_0004_1284 97.1 4e-19
> Ahg492357 jgi|Araly1|492357|fgenesh2_kg.7__1790__AT4G24810.2
Length=1630
Score = 2479 bits (1342), Expect = 0.0
Identities = 1527/1615 (95%), Gaps = 18/1615 (1%)
Strand=Plus/Plus
Query 115 AATGCATGCGATCGATTTCAAAGAGATTCAGGAGAAGCTCTCTGATGGATTCCGGCCTTG 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 29 AATGCATGCGATCGATTTCAAAGAGATTCAGGAGAAGCTCTCTGATGGATTCCGGCCTTG 88
Query 175 GCAACGATCGTTTCAGTTCTGGGCTCGTGCCACTGATATCTACACCGGATACAAGGTATT 234
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 89 GCAACGATCGTTTCAGTTCTGGGCTCGTGCCACTGACATCTACACTGGATACAAGGTATT 148
Query 235 TCAACTTCGTATGAACTTCGTCAAGGATGTTAATAAGCACGAGGAGATGTGGGAGAGACA 294
||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 149 TCAACTTCGTATGAACTTCGTTAAGGATGTCAATAAGCACGAGGAAATGTGGGAGAGACA 208
Query 295 ACATGAACTTGCTGCTCAT-AAAGTTTATTCTATGTGCTCTGACCTTGGTGGTTTCTTCC 353
||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct 209 ACATGAACTTGCTGCTC-TCAAAATTTATTCTATGTGCTCTGACCTTGGTGGTTTCTTCC 267
Query 354 TTAAGATTGCACAAATTCTAGGGAAACCTGACTTGGCTCCAGCTGCTTGGGTGAGAAAAC 413
|||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct 268 TTAAGATTGCACAAATTCTAGGTAAACCTGACTTGGCTCCAGCTGCGTGGGTTAGAAAAC 327
Query 414 TCGTCACTTTGTGTGATCAAGCTCCTGCCACACCATTTGATGCCGTTCGAGTTGTCCTGG 473
||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||| |
Sbjct 328 TCGTCACTTTGTGTGATCATGCTCCTGCCACATCATTTGATGCCATTCGAGTTGTCCTTG 387
Query 474 AGAAAGAGTTAGGTAAAAGCATCGAACAAGTGTTTGAAACATTTGATGAGAAGCCTCTTG 533
|||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||
Sbjct 388 AGAAAGAGTTAGGTAAAAGCCTCGAAGATGTGTTTGAAACATTTGATGAGAAGCCTCTTG 447
Query 534 GCTCTGCTTCTATTGCTCAGGTACACCGAGCAAGAGTAAAGGGTGACAAGAGGGATGTTG 593
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 448 GCTCTGCTTCTATTGCTCAGGTACACCGAGCAAGAGTAAAAGGTGACAAGAGGGATGTTG 507
Query 594 TTGTAAAGGTCCAACATCCTGGCGTTGAGAAGTTGATGATGGTTGATATCAGAAACTTGC 653
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 508 TTGTAAAGGTCCAACATCCTGGCGTTGAGAAATTGATGATGGTAGATATCAGAAACTTGC 567
Query 654 AAATATTTGCATTATACATGCAGAAAACTGATATCAAATTTGACTTGTTCTCCATGACAA 713
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 568 AAGTATTTGCATTATACATGCAGAAAACTGATATTAAATTTGACTTGTTCTCCATGACAA 627
Query 714 AGGAAATAGAGAAGCAGATTGGGTATGAATTCGACTTTAAAAGGGAGGCCAATGCAATGG 773
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 628 AAGAAATCGAGAAGCAGATTGGGTATGAATTCGACTTTAAAAGGGAGGCCAATGCTATGG 687
Query 774 AGAAGATCCGACGTTTTCTATATGATAACAATAGAAAGAGTCCTGTTCTGGTTCCCAGGG 833
| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 688 AAAAGATCCGACGTTTTCTTTATGATAACAATAGAAAGAGTCCTGTCCTGGTTCCCAGGG 747
Query 834 TGTTTCCAAATTTGGTGACCAGGAAGGTTCTGGTTATGGAATT-CATGAACGGAATCCCG 892
|| |||||||||||||||| || ||||| ||||| |||| ||| |||||||||||||||
Sbjct 748 TGCTTCCAAATTTGGTGACTAGAAAGGTACTGGTGATGG-ATTACATGAACGGAATCCCA 806
Query 893 ATCTTGAGCCTTGGTGATGAGATGGCAAAAAGAGGGATAAATCCTCATGGTAAAATGGCA 952
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 807 ATCTTGAGCCTCGGTGATGAGATGGCCAAAAGAGGGATAAATCCTCATGGTAAAATGGCA 866
Query 953 GAGGCAGCAAAATTCAATATACTACACAGTTTGTCCCAAGCATATGGCCAAATGATACTG 1012
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 867 GAGGCGGCAAAATTCAATATACTAAACAGTTTGTCCCAAGCATATGGCCAAATGATACTG 926
Query 1013 AAGAGTGGTTTCTTTCATGCGGATCCACATCCTGGGAATATCTTGATTGGTAAAGGTTCA 1072
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 927 AAGAGTGGTTTCTTTCATGCGGATCCACATCCTGGGAATATCTTGATTTCTAAAGGTTCA 986
Query 1073 GAGGTTGCACTGCTGGACTATGGTCAAGTGAAAGAACTCCCTGACCACCTGAGACTTGGT 1132
|||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 987 GAGGTTGCACTGTTGGACTATGGACAAGTGAAGGAACTCCCTGACCACCTGAGACTTGGT 1046
Query 1133 TATGCAAATTTGGTAATTGCCATCGCTGATAACAATGCGTCATTGGCGTTACAGAGCTTT 1192
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1047 TATGCAAATTTGGTAATTGCCATCGCTGATAACAATGCCTCATTGGCATTACAGAGCTTT 1106
Query 1193 AGGGAACTTGGTATAGCTACAGTAGCCAAGTGTAAGAATGAGCAACAAGAGCTTCTCCAG 1252
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1107 AGGGAACTTGGCATAGCTACAGTCGCCAAGTGTAAGAATGAGCAACAAGAGCTTCTCCAG 1166
Query 1253 TTAGCAAAAACAATGTTCGACACAGAGATGCCTCCTGGTACGACAACTCTGCAACCTTTC 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1167 TTAGCAAAAACAATGTTCGACACAGAGATGCCTCCTGGTACGACAACTCTGCAACCTTTC 1226
Query 1313 TCAGAAGACTCTTCGATCAAAAAGATTTCGGTTGAGGCATTTCCAGAGGAACTCTTCTCT 1372
|||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1227 TCAGTTGACTCTTCGATCAAAAAGATTTCGGTTGAGGCATTTCCAGAGGAGCTTTTCTCT 1286
Query 1373 GTTCTTCGCACAGTAGTTCTGTTAAGAGGACTCAGCGTAGGGATTGGCATTAATTACTCC 1432
||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1287 GTTCTTCGCACGGTAGTTCTGTTAAGAGGACTCAGCGTAGGGATAGGGATTAATTACTCC 1346
Query 1433 TGCGCTCAACACTGGAGGGCTATGGCAGAAGAGGCTTTGCATGCATCTGGAAGACTCTCA 1492
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1347 TGCGCTCAACACTGGAGGTCTATGGCAGAAGAGGCTTTGCTTGCATCTGGAAGACTCTCA 1406
Query 1493 ACAGGTAGAAAGCAGAAGCGTCGATGTAGTTCTCTTAGAAGGCTATACCCAGGGCCAAGA 1552
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
Sbjct 1407 ACAGGTAGAAAGCAGAAGCGTCGATGTAGTTCTCTGAGAAGGCTATACCCAGGGCGAAAA 1466
Query 1553 GAGAGTTAATAAAATCCCCTGCCTCTTGCAAATGATGC--TCT-CAGTCTTTAGTCTTTA 1609
|||||||||| | || || | |||||||||||||| | ||| ||||| | ||||||
Sbjct 1467 GAGAGTTAATCATTTCACCAGTCTCTTGCAAATGATTCAATCTTCAGTCC--A-TCTTTA 1523
Query 1610 CATTATTTTCTGGATACAGCTAAGGCAGCAAGTTGTCTCTTACCTTAACCGGTTTAGTTG 1669
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1524 CATTATTTTCTGGATACAGCTAAGGCAGCAAGTTGTCTCTTATCTTAATCGGTTTAGTTA 1583
Query 1670 GTTTGAAACTTTGACTAGTGAGTACATCTTTATAAAAGTTTTGTCATTATAATGT 1724
||||| | | ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1584 GTTTG---C----A-TAGTGAGTACACCTTTATAAAAGTTTTGTCATTATAATGT 1630
> Ahg497506 jgi|Araly1|497506|fgenesh2_kg.664__1__AT5G50330.1
Length=1652
Score = 1280 bits (693), Expect = 0.0
Identities = 1165/1392 (84%), Gaps = 36/1392 (3%)
Strand=Plus/Plus
Query 113 AAAATGCATGCGATCGATTTCAAAGAGATTCAGGAGAAGCTCTCTGATG-GATTCCGGCC 171
|||||||||| | |||||||||||||||||||||||||| |||| || | | || || ||
Sbjct 109 AAAATGCATGGGTTCGATTTCAAAGAGATTCAGGAGAAGATCTCCGA-GAGCTTTCGTCC 167
Query 172 TTGGCAACGATCGTTTCAGTTCTGGGCTCGTGCCACTGATATCTACACCGGATACAAGGT 231
|||||||| || ||||| ||||||| ||| || ||| |||||||||| || ||||||||
Sbjct 168 ATGGCAACGCTCTTTTCAATTCTGGGTTCGAGCTACTAATATCTACACAGGCTACAAGGT 227
Query 232 ATTTCAACTTCGTA-TGAACTTCGTCAAGGATGTTAATAAGCACGAGGAGATGTGGGAGA 290
||||||||||| | ||| || || || |||| || ||||| ||||| |||||||| |
Sbjct 228 GTTTCAACTTCG-AGTGAGTTTAGTGAAAGATGCAAAGAAGCAAGAGGAAATGTGGGAAA 286
Query 291 GACAACATGAACTTGCTGCTCATAA-AGTTTA-TTCTATGTGCTCTGACCTTGGTGGTTT 348
|||||||||| | |||||| |||| | |||| ||| ||||||||||| ||||| |||||
Sbjct 287 GACAACATGAGCAAGCTGCTGATAACA-TTTACTTC-ATGTGCTCTGATCTTGGGGGTTT 344
Query 349 CTTCCTTAAGATTGCACAAATTCTAGGGAAACCTGACTTGGCTCCAGCTGCTTGGGTGAG 408
||||||||||||||| ||| || ||| ||||||||| |||| ||||||| ||||||||
Sbjct 345 CTTCCTTAAGATTGCTCAACTTTTAGCAAAACCTGACATGGCACCAGCTGGTTGGGTGA- 403
Query 409 AAAA-CTCGTCACTTTGTGTGATCAAGCTCCTGCCACACCATTTGATGCCGTTCGAGTTG 467
|||| || || ||||||||||||||||||||||| || || |||||||| ||| | |||
Sbjct 404 AAAAGCTTGTAACTTTGTGTGATCAAGCTCCTGCGACGCCGTTTGATGCAATTCAACTTG 463
Query 468 TCCTGGAGAAAGAGTTAGGTAAAAGCATCGAACAAGTGTTTGAAACATTTGATGAGAAGC 527
| || ||||| ||||||||||||||||| | || | ||||||||||||||||| ||||
Sbjct 464 TTCTAGAGAAGGAGTTAGGTAAAAGCATTGGTGAAATCTTTGAAACATTTGATGAAAAGC 523
Query 528 CTCTTGGCTCTGCTTCTATTGCTCAGGTACACCGAGCAAGAGTAAAGGGTGACAAGAGGG 587
||||||| |||||||||||||||||||| ||| ||||||||||||||||| |||||| |
Sbjct 524 CTCTTGGTTCTGCTTCTATTGCTCAGGTTCACAGAGCAAGAGTAAAGGGTAACAAGATGA 583
Query 588 ATGTTGTTGTAAAGGTCCAACATCCTGGCGTTGAGAA-GTTGATGATGGTTGATATCAGA 646
|||||||||||||||| ||||| |||||| | || || |||||||||| || || |||
Sbjct 584 ATGTTGTTGTAAAGGTTCAACACCCTGGCATCGA-AAGGTTGATGATGACAGACATTAGA 642
Query 647 AACTTGCAAATATTTGCATTATACATGCAGAAAACTGATATCAAATTTGACTTG-TTCTC 705
||||||||| |||| || ||||||||||||| ||| ||||||||||||||| || | ||
Sbjct 643 AACTTGCAACTATTCGCCTTATACATGCAGAGAACAGATATCAAATTTGACCTGCAT-TC 701
Query 706 CATGACAAAGGAAATAGAGAAGCAGATTGGGTATGAATTCGACTTTAAAAGGGAGGCCAA 765
||| || |||||||| ||||| |||||||| |||||||| ||||| |||||||||||||
Sbjct 702 CATAACCAAGGAAATGGAGAAACAGATTGGTTATGAATTTGACTTCAAAAGGGAGGCCAG 761
Query 766 TGCAATGGAGAAG-ATCCGACGTTTTCTATATGATAACAATAGAAAGAGTCCTGTTCTGG 824
||||||||| ||| || ||| ||||||| ||||| ||||| | |||| ||||||| |||
Sbjct 762 TGCAATGGA-AAGAATTCGATGTTTTCTTTATGAGAACAACAAAAAGTCTCCTGTTTTGG 820
Query 825 TTCCCAGGGTGT-TTCCAAATTTGGTGACCAGGAAGGTTCTGGTTATGGAATTCATGAAC 883
| || || || | | | | || ||||||| | || |||| |||| ||||||| ||| ||
Sbjct 821 TACCAAGAGT-TCTGCGAGATATGGTGACTAAGAGGGTTTTGGTGATGGAATACATTAAT 879
Query 884 GGAATCCCGA-TCTTGAGCCTTGGTGATGAGATGGCAAAAAGAGGGATAAATCCTCATGG 942
||||| || | || ||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 880 GGAATTCCAATTC-TGAGCATTGGTGATGAGATGGCTAAAAGAGGGATAAATCCTCATGG 938
Query 943 TAAAATGGCAGAGGCAGCAAAATTCAATATAC-TACACAGTTTGTCCCAAGCATATGGCC 1001
||| || |||||||||||||| |||||||| || |||||| |||| || |||||||
Sbjct 939 TAAGATTGCAGAGGCAGCAAAGCACAATATACTTA-GCAGTTTATCCCGTGCGTATGGCC 997
Query 1002 AAATGATACTGAAGAGTGGTTTCTTTCATGCGGATCCACATCCTGGGAATATCTTGATTG 1061
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 998 AAATGATACTGAAAAGTGGTTTCTTTCATGCGGATCCACATCCTGGAAATATCTTGATTT 1057
Query 1062 GTAAAGGTTCA-GAGGTTGCACTGCTGGACTATGGTCAAGTGAAAGAACT-CCCTGACCA 1119
| |||||| || |||||||||||||||||||||||||||||||| ||||| ||| ||| |
Sbjct 1058 GCAAAGGT-CAAGAGGTTGCACTGCTGGACTATGGTCAAGTGAAGGAACTACCC-GACAA 1115
Query 1120 CCTGAGACTTGGTTATGCAAATTTGGTAATTGCCATCGCTGATAACAATGCGTCATTGGC 1179
|||||||||||||||| |||||||| |||||||| |||||| ||||||| ||| ||
Sbjct 1116 GTTGAGACTTGGTTATGCGAATTTGGTCATTGCCATGGCTGATGACAATGCTTCA--GGA 1173
Query 1180 GT-T-ACAGAGCTTTAGGGAACTTGGTATAGC-TACAGTAGCCAAGTGTAAGAATGAGCA 1236
|| | |||||||||| ||||| | ||| | || |||||| ||||||||| ||| |||||
Sbjct 1174 GTATCACAGAGCTTTTGGGAAATGGGTTT-GCATACAGTGGCCAAGTGTGTGAACGAGCA 1232
Query 1237 ACAAGAGCTTCTCCAGTTAGCAAAAACAATGTTCGACACAGAGATGCCTCCTGGT-ACGA 1295
||||| ||||| | ||||||| ||||| | ||||| ||| ||||||| ||||| | ||
Sbjct 1233 GCAAGAACTTCTGCGGTTAGCACAAACACTTTTCGATACAAAGATGCCAGCTGGTCA-GA 1291
Query 1296 CAACTCTGCAACCTTTCTCAGAAGACTCTTCGATCAAAAAGATTTCGGTTGAGGCATTTC 1355
|| | ||||||| |||||||| ||||||||||| |||||||| | |||||| ||||||
Sbjct 1292 CAGTTTTGCAACCATTCTCAGATGACTCTTCGATTAAAAAGATAGCCGTTGAGACATTTC 1351
Query 1356 CAGAGGAACTCTTCTCTGTTCTTCGCACAGTAGTTCTGTTAAGAGGACTCAGCGTAGGGA 1415
|||||||||| |||||||| ||||| || || |||||||||||||||||||| || ||||
Sbjct 1352 CAGAGGAACTGTTCTCTGTACTTCGTACTGTGGTTCTGTTAAGAGGACTCAGTGTTGGGA 1411
Query 1416 TTGGCA-TTAATTACTCCTGCGCTCAACACTGGAGGGCTATGGCAGAAGAGGCTTTGCAT 1474
| || | |||||||||| || || ||||| ||||| | ||||| ||||||||||| | |
Sbjct 1412 TGGG-AGTTAATTACTCATGTGCACAACAGTGGAGATCAATGGCCGAAGAGGCTTTACTT 1470
Query 1475 GCATCTGGAAGA 1486
||||||||||||
Sbjct 1471 GCATCTGGAAGA 1482
> Ahg495093 jgi|Araly1|495093|fgenesh2_kg.8__909__AT5G50330.1
Length=1652
Score = 1280 bits (693), Expect = 0.0
Identities = 1165/1392 (84%), Gaps = 36/1392 (3%)
Strand=Plus/Plus
Query 113 AAAATGCATGCGATCGATTTCAAAGAGATTCAGGAGAAGCTCTCTGATG-GATTCCGGCC 171
|||||||||| | |||||||||||||||||||||||||| |||| || | | || || ||
Sbjct 109 AAAATGCATGGGTTCGATTTCAAAGAGATTCAGGAGAAGATCTCCGA-GAGCTTTCGTCC 167
Query 172 TTGGCAACGATCGTTTCAGTTCTGGGCTCGTGCCACTGATATCTACACCGGATACAAGGT 231
|||||||| || ||||| ||||||| ||| || ||| |||||||||| || ||||||||
Sbjct 168 ATGGCAACGCTCTTTTCATTTCTGGGTTCGAGCTACTAATATCTACACAGGCTACAAGGT 227
Query 232 ATTTCAACTTCGTA-TGAACTTCGTCAAGGATGTTAATAAGCACGAGGAGATGTGGGAGA 290
||||||||||| | ||| || || || |||| || ||||| ||||| |||||||| |
Sbjct 228 GTTTCAACTTCG-AGTGAGTTTAGTGAAAGATGCAAAGAAGCAAGAGGAAATGTGGGAAA 286
Query 291 GACAACATGAACTTGCTGCTCATAAAGTTTA-TTCTATGTGCTCTGACCTTGGTGGTTTC 349
|||||||||| | |||||| ||||| | || ||| ||||||||||||||||| ||||||
Sbjct 287 GACAACATGAGCAAGCTGCTGATAAAATCTACTTC-ATGTGCTCTGACCTTGGGGGTTTC 345
Query 350 TTCCTTAAGATTGCACAAATTCTAGGGAAACCTGACTTGGCTCCAGCTGCTTGGGTGAGA 409
|||||||||||||| ||| || ||| ||||||||| |||| |||||||||||||||| |
Sbjct 346 TTCCTTAAGATTGCTCAACTTTTAGCAAAACCTGACATGGCACCAGCTGCTTGGGTGA-A 404
Query 410 AAA-CTCGTCACTTTGTGTGATCAAGCTCCTGCCACACCATTTGATGCCGTTCGAGTTGT 468
||| || || ||||||||||||||||||||||| || || |||||||| ||| | ||||
Sbjct 405 AAAGCTTGTAACTTTGTGTGATCAAGCTCCTGCGACGCCGTTTGATGCAATTCAACTTGT 464
Query 469 CCTGGAGAAAGAGTTAGGTAAAAGCATCGAACAAGTGTTTGAAACATTTGATGAGAAGCC 528
|| ||||| ||||||||||||||||| | || | ||||||||||||||||| |||||
Sbjct 465 TCTAGAGAAGGAGTTAGGTAAAAGCATTGGTGAAATCTTTGAAACATTTGATGAAAAGCC 524
Query 529 TCTTGGCTCTGCTTCTATTGCTCAGGTACACCGAGCAAGAGTAAAGGGTGACAAGAGGGA 588
||||| |||||||||||||||||||| ||| ||||||||||||||||| |||||| | |
Sbjct 525 GCTTGGTTCTGCTTCTATTGCTCAGGTTCACAGAGCAAGAGTAAAGGGTAACAAGATGAA 584
Query 589 TGTTGTTGTAAAGGTCCAACATCCTGGCGTTGAGAA-GTTGATGATGGTTGATATCAGAA 647
||||||||||||||| ||||| |||||| | || || |||||||||| || || ||||
Sbjct 585 TGTTGTTGTAAAGGTTCAACACCCTGGCATCGA-AAGGTTGATGATGACAGACATTAGAA 643
Query 648 ACTTGCAAATATTTGCATTATACATGCAGAAAACTGATATCAAATTTGACTTG-TTCTCC 706
|||||||| |||| || ||||||||||||| ||| ||||||||||||||| || | |||
Sbjct 644 ACTTGCAACTATTCGCCTTATACATGCAGAGAACAGATATCAAATTTGACCTGCAT-TCC 702
Query 707 ATGACAAAGGAAATAGAGAAGCAGATTGGGTATGAATTCGACTTTAAAAGGGAGGCCAAT 766
|| || |||||||| ||||| |||||||| |||||||| ||||| ||||||||||||| |
Sbjct 703 ATAACCAAGGAAATGGAGAAACAGATTGGTTATGAATTTGACTTCAAAAGGGAGGCCAGT 762
Query 767 GCAATGGAGAAG-ATCCGACGTTTTCTATATGATAACAATAGAAAGAGTCCTGTTCTGGT 825
|||||||| ||| || ||| ||||||| ||||| ||||| | |||| ||||||| ||||
Sbjct 763 GCAATGGA-AAGAATTCGATGTTTTCTTTATGAGAACAACAAAAAGTCTCCTGTTTTGGT 821
Query 826 TCCCAGGGTGT-TTCCAAATTTGGTGACCAGGAAGGTTCTGGTTATGGAATTCATGAACG 884
|| || || | | | | || ||||||| | || |||| |||| ||||||| ||| || |
Sbjct 822 ACCAAGAGT-TCTGCGAGATATGGTGACTAAGAGGGTTTTGGTGATGGAATACATTAATG 880
Query 885 GAATCCCGA-TCTTGAGCCTTGGTGATGAGATGGCAAAAAGAGGGATAAATCCTCATGGT 943
|||| || | || ||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 881 GAATTCCAATTC-TGAGCATTGGTGATGAGATGGCTAAAAGAGGGATAAATCCTCATGGT 939
Query 944 AAAATGGCAGAGGCAGCAAAATTCAATATAC-TACACAGTTTGTCCCAAGCATATGGCCA 1002
|| || |||||||||||||| |||||||| || |||||| |||| || ||||||||
Sbjct 940 AAGATTGCAGAGGCAGCAAAGCACAATATACTTA-GCAGTTTATCCCGTGCGTATGGCCA 998
Query 1003 AATGATACTGAAGAGTGGTTTCTTTCATGCGGATCCACATCCTGGGAATATCTTGATTGG 1062
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 999 AATGATACTGAAAAGTGGTTTCTTTCATGCGGATCCACATCCTGGAAATATCTTGATTTG 1058
Query 1063 TAAAGGTTCA-GAGGTTGCACTGCTGGACTATGGTCAAGTGAAAGAACT-CCCTGACCAC 1120
|||||| || |||||||||||||||||||||||||||||||| ||||| ||| ||| |
Sbjct 1059 CAAAGGT-CAAGAGGTTGCACTGCTGGACTATGGTCAAGTGAAGGAACTACCC-GACAAG 1116
Query 1121 CTGAGACTTGGTTATGCAAATTTGGTAATTGCCATCGCTGATAACAATGCGTCATTGGCG 1180
|||||||||||||||| |||||||| |||||||| |||||| ||||||| ||| || |
Sbjct 1117 TTGAGACTTGGTTATGCGAATTTGGTCATTGCCATGGCTGATGACAATGCTTCA--GGAG 1174
Query 1181 T-T-ACAGAGCTTTAGGGAACTTGGTATAGC-TACAGTAGCCAAGTGTAAGAATGAGCAA 1237
| | |||||||||| ||||| | ||| | || |||||| ||||||||| ||| |||||
Sbjct 1175 TATCACAGAGCTTTTGGGAAATGGGTTT-GCGTACAGTGGCCAAGTGTGTGAACGAGCAG 1233
Query 1238 CAAGAGCTTCTCCAGTTAGCAAAAACAATGTTCGACACAGAGATGCCTCCTGGT-ACGAC 1296
||||| ||||| | ||||||| ||||| | ||||| ||| ||||||| ||||| | |||
Sbjct 1234 CAAGAACTTCTGCGGTTAGCACAAACACTTTTCGATACAAAGATGCCAGCTGGTCA-GAC 1292
Query 1297 AACTCTGCAACCTTTCTCAGAAGACTCTTCGATCAAAAAGATTTCGGTTGAGGCATTTCC 1356
| | ||||||| |||||||| ||||||||||| |||||||| | |||||| |||||||
Sbjct 1293 AGTTTTGCAACCATTCTCAGATGACTCTTCGATTAAAAAGATAGCCGTTGAGACATTTCC 1352
Query 1357 AGAGGAACTCTTCTCTGTTCTTCGCACAGTAGTTCTGTTAAGAGGACTCAGCGTAGGGAT 1416
||||||||| |||||||| ||||| || || |||||||||||||||||||| || |||||
Sbjct 1353 AGAGGAACTGTTCTCTGTACTTCGTACTGTGGTTCTGTTAAGAGGACTCAGTGTTGGGAT 1412
Query 1417 TG-GCA-TTAATTACTCCTGCGCTCAACACTGGAGGGCTATGGCAGAAGAGGCTTTGCAT 1474
| | | |||||||||| || || ||||| ||||| | ||||| ||||||||||| | |
Sbjct 1413 -GAG-AGTTAATTACTCATGTGCACAACAGTGGAGATCAATGGCCGAAGAGGCTTTACTT 1470
Query 1475 GCATCTGGAAGA 1486
||||||||||||
Sbjct 1471 GCATCTGGAAGA 1482
> Ahg900634 jgi|Araly1|900634|Al_scaffold_0004_1284
Length=219
Score = 97.1 bits (52), Expect = 4e-19
Identities = 58/61 (95%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 722 GAGAAGCAGATTGGGTATGAATTCGACTTTAAAAGGGAGGCCAATGCAATGGAGAAGATC 781
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||
Sbjct 115 GAGAAGCAGATTGGGTATGAATTCGACTTTGAAAGGGAGGCCAATGCAATGGAAAAGCTC 174
Query 782 C 782
|
Sbjct 175 C 175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64715326255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5