BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24860.1
Length=3400
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329179 jgi|Araly1|329179|fgenesh1_pm.C_scaffold_7001406 2636 0.0
Ahg315176 jgi|Araly1|315176|fgenesh1_pm.C_scaffold_2000209 603 4e-171
> Ahg329179 jgi|Araly1|329179|fgenesh1_pm.C_scaffold_7001406
Length=3420
Score = 2636 bits (1427), Expect = 0.0
Identities = 1701/1829 (93%), Gaps = 35/1829 (2%)
Strand=Plus/Plus
Query 1557 GGGACCTCCTAATGGGACTACAGGGAAAGTAATTTTAGTGTTTGATGAGAATCCTTCAGC 1616
|||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1611 GGGACCTCCTAAAGGGATTACAGGGAAAGTAATTTTAGTATTTGATGAGAATCCTTCAGC 1670
Query 1617 TAAAGTGGGTGTTAGATTTGATAAGCCAATACCTGATGGAGTTGATCTTGGTGAACTATG 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1671 TAAAGTGGGTGTTAGATTTGATAAGCCAATACCTGATGGAGTTGATCTTGGTGAACTGTG 1730
Query 1677 TGAAAGC-GGACATGGGTTCTTCTGCAAAGCTACTGATCTTCCGTTCAAAAGCTCGAGTT 1735
||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1731 TGAAA-CAGGACATGGGTTCTTCTGCAAAGCTACTGATCTGAAGTTCAAAAGCTCGAGTT 1789
Query 1736 TTAAGGATCTAGTTAGATTACTTGTTAACACATTGTTTGAGGTTGTCCATTCTGAGAGCA 1795
| ||||||||| || |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1790 CTGAGGATCTAGCTAAATTACTTGTTAACACATTGTTTGAGGTTGTCCATACTGAGAGCA 1849
Query 1796 GAACTTGTCCGTTTATTCTATTTTTGAAAGATGCTGAGAAATCTGTTGCTGGAAACTT-C 1854
||||| ||||||| |||||||||||||||||||||||||||||||||| |||||| || |
Sbjct 1850 GAACTCGTCCGTTAATTCTATTTTTGAAAGATGCTGAGAAATCTGTTGTTGGAAA-TTCC 1908
Query 1855 GATTTGTACTCTGCGTTCCAAATCAGACTTGAATATCTCCCAGAAAACGTAATTGTGATC 1914
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1909 GATTTGTACTCTGCGTTCCAAATCAGACTTGAATATCTCCCAGACAACGTAATTGTGATC 1968
Query 1915 TGTTCACAGACACACTCAGATCATCTCAAGGTGAAGGATATTGGAAGACAAAAGAAGCAA 1974
|||||||||||||||| |||||||||| || ||||||||||||| |||||||| |||||
Sbjct 1969 GGTTCACAGACACACTCTGATCATCTCATGGAGAAGGATATTGGACGACAAAAGGAGCAA 2028
Query 1975 GGGAAGGAAGTCCCACATGCAACAGAACTTCTAGCGGAGCTCTTTGAGAATAAAATTACT 2034
||||| ||||||||||| |||||||||||||||||||||||||||||||||||| || ||
Sbjct 2029 GGGAATGAAGTCCCACAGGCAACAGAACTTCTAGCGGAGCTCTTTGAGAATAAAGTTCCT 2088
Query 2035 ATTCAGATGCCACAGGATGAGAAACGTCTTACATTGTGGAAGCATCAAATGGATCGTGAT 2094
||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 2089 ATTCAAATGCCACAGGATGAGGAACTTCTTACATTGTGGAAGCATCAAATGGATCGTGAT 2148
Query 2095 GCTGAGACTTCGAAAGTGAAGTCTAACTTCAATCACTTGCGCATGGTGTTGCGACGACGT 2154
||||||| ||||||||||||| |||| |||| ||||||||||||||||||| ||| | ||
Sbjct 2149 GCTGAGATTTCGAAAGTGAAGGCTAATTTCAGTCACTTGCGCATGGTGTTGGGACTATGT 2208
Query 2155 GGTCTAGGATGTGAAGGACTTGAGACGACGTGGTCTAGGATGTGCCTGAAGGATCTCACA 2214
||||| |||||||||||| || || ||| | | ||||| ||||||||||||||
Sbjct 2209 GGTCTGGGATGTGAAGGAATT--GA-GAC---G-C-----TGTGCATGAAGGATCTCACA 2256
Query 2215 CTTCAAAGAGACAGTGTAGAAAAGATCATTGGATGGGCTTTTGGTAACCATATAAGCAAA 2274
|||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2257 CTTCAAAGCGACAGTGCAGAAAAGATCATTGGATGGGCTTTTAGTAACCATATAAGCAAT 2316
Query 2275 AATCCTGATACTGATCCAGCTAAGGTTACTTTGTCTCGAGAGAGCATAGAATTTGGAATA 2334
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 2317 AATCCTGATACTGATCCAGCTAAGGTTATTTTGTCTCGTGAGAGCATAGAATTTGGAATA 2376
Query 2335 GGACTCTTACAGAATGATCTAAAAGGTTCTACGAGCTC-AA-A-G------AAGGACATT 2385
|||||||||||| |||||| ||||||||||||||||| || | | |||||||||
Sbjct 2377 GGACTCTTACAGGGTGATCTTAAAGGTTCTACGAGCTCAAAGAGGTCTCTCAAGGACATT 2436
Query 2386 GTGGTAGAAAATGTGTTTG-AGAAGAGGCTTCTAAGTGATGTAATTCTGCCCAGTGACAT 2444
||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 2437 GTGACAGAAAATGAGTTTGAAG-AGAGGCTTCTAAGTGATGTAATTCTGCCCAGTGACAT 2495
Query 2445 TGATGTTACATTTGATGACATTGGGGCACTTGAGAAAGTCAAAGATATCTTAAAGGAACT 2504
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2496 TGATGTTACATTTGATGACATTGGGGCACTTGAGAAAGTCAAAGATACCTTAAAGGAACT 2555
Query 2505 GGTTATGCTTCCTTTACAACGGCCTGAACTTTTCTGCAAGGGGGAATTAACAAAGCCTTG 2564
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2556 GGTTATGCTCCCTTTACAACGGCCTGAACTTTTCTGCAAGGGGCAATTAACAAAGCCTTG 2615
Query 2565 TAAAGGAATTCTTTTATTTGGACCTCCTGGAACTGGAAAGACCATGCTTGCAAAAGCAGT 2624
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2616 TAAAGGAATTCTCTTATTTGGACCTCCTGGTACTGGAAAGACCATGCTTGCAAAAGCAGT 2675
Query 2625 GGCAAAGGAAGCTGATGCGAACTTCATCAACATCTCAATGTCAAGCATCACATCTAAGTG 2684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2676 GGCAAAGGAAGCTGATGCGAACTTCATCAACATCTCAATGTCAAGCATCACATCTAAGTG 2735
Query 2685 GTTTGGTGAGGGTGAGAAGTATGTCAAAGCTGTCTTTTCTTTGGCCAGTAAAATGTCCCC 2744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2736 GTTTGGTGAGGGTGAGAAGTATGTCAAAGCTGTCTTTTCTTTGGCCAGTAAAATGTCCCC 2795
Query 2745 TAGCGTTATCTTTGTGGACGAGGTGGACAGCATGCTAGGCCGAAGAGAACACCCAC-GTG 2803
| ||||||||||||||||||||||||||||||||||||||||||||||| ||| || | |
Sbjct 2796 TTGCGTTATCTTTGTGGACGAGGTGGACAGCATGCTAGGCCGAAGAGAAAACCGACAGGG 2855
Query 2804 AACATGAAGCC-TCGCGGAAGATTAAAAATGAGTTCATGATGCATTGGGACGGTCTTACG 2862
| ||||||| | | ||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 2856 A-CATGAAGGCAT-GCGGAAGATGAAAAATGAGTTCATGATGCATTGGGACGGTCTAACG 2913
Query 2863 ACTCAGGAAAGGGAACGTGTTCTGGTCCTTGCAGCCACAAATCGGCCTTTTGACCTTGAT 2922
||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2914 ACTAAGGAAATGGAACGTGTTCTGGTTCTTGCAGCCACAAATCGGCCTTTTGACCTTGAT 2973
Query 2923 GAGGCTGTTATTAGACGGTTGCCCCGTAGGTTGATGGTGGGACTACCAGATACTTCAAAT 2982
|||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 2974 GAGGCTGTCATTAGACGGTTGCCCAGTAGGTTGATGGTGGGACTACCAGATACATCAAAT 3033
Query 2983 AGAGCATTTATATTAAAGGTTATACTTGCAAAAGAAGACTTGTCCCCTGATTTGGATATT 3042
||||||| |||||||||||||||||||||||||||| || ||||||||| |||||| |||
Sbjct 3034 AGAGCATATATATTAAAGGTTATACTTGCAAAAGAAAACGTGTCCCCTGGTTTGGACATT 3093
Query 3043 GGT-GAGATTGCTAGTATGACTAATGGATATTCTGGAAGTGATCTTAAGAATCTATGTGT 3101
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3094 AATTG-GATTGCTAGTATGACTAATGGATATTCTGGAAGTGATCTTAAGAATCTATGTGT 3152
Query 3102 TACTGCTGCCCACCGTCCAATCAAGGAGATATTGGAGAAGGAAAAAAGAGAGCGAGATGC 3161
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 3153 TACTGCTGCCCACCGTCCAATCAAGGAGCTGTTGGAGAAGGAAAAAAGAGAGCGAGATGC 3212
Query 3162 TGCTCTGGCTCAAGGCAAAGTTCCTCCACCTCTAAGTGGAAGTTCTGATCTCCGAGCTTT 3221
|||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 3213 TGCTCTGGCTGAAGGCAAAGTTCCTCCAGCTCTAAGAGGAAGTTCTGATCTCCGAGCTTT 3272
Query 3222 AAACGTGGAGGATTTCAGAGACGCACATAAGTGGGTGTCTGCGAGCGTCTCATCAGAGTC 3281
|||| |||||||||||||| |||||||| || |||||| ||||||||||| || ||||||
Sbjct 3273 AAACATGGAGGATTTCAGATACGCACATGAGCGGGTGTGTGCGAGCGTCTTATTAGAGTC 3332
Query 3282 TGCGA-CTATGACAGCGCTTCAACAATGGAACAAACTCCACGGGGAAGGTGGATCCGGAA 3340
||||| | |||||| ||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 3333 TGCGAAC-ATGACAACGCTTCAACAATGGAACGAACTCTACGGGGAAGGTGGATCCAGAA 3391
Query 3341 AGCAGCAATCATTCAGCTTCTACACGTAG 3369
|||||||||||||||||||||||| ||||
Sbjct 3392 AGCAGCAATCATTCAGCTTCTACATGTAG 3420
Score = 706 bits (382), Expect = 0.0
Identities = 468/509 (92%), Gaps = 7/509 (1%)
Strand=Plus/Plus
Query 684 CCATGCATCCAGTAAGAGCCACCAAGCGCCAGAGTC-GATGGTCCAAGTTGACGGCATGG 742
||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 789 CCATGAATCCAGTAAGAGCCACCAAGCGCCAGAGTCTG-TGGTCCAAGTTGACGGCATGG 847
Query 743 AAGGAATTTTTTCTGTTAACAACCAAGATTCCAAAATGGAGATATTGGATGAGAAAAACG 802
|| | | | | |||||||||||||||||||| ||||||| |||||||| ||||
Sbjct 848 GAGCAGTCAGTAC---CCACAACCAAGATTCCAAAATGCAGATATTAGATGAGAAGAACG 904
Query 803 AGGTGACAAGTAATTCACAACAAGCTTCAACATCAGGCAATGGTCTGCAATCTGCAATAT 862
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 AGGTGACAAGTAATTCACAACAAGCTTCAACATCAGGCAATGGTCTGCAATCTGCAATAG 964
Query 863 TCAGAGAAGCCATTCAAGCTGGTTTTGTTAG-AGGCGAAAACATGGAAGTTTCATTCAAA 921
||||||||| ||||||||||||| ||||| | |||||||||| ||||||||||| |||||
Sbjct 965 TCAGAGAAGGCATTCAAGCTGGTATTGTT-GAAGGCGAAAACTTGGAAGTTTCAATCAAA 1023
Query 922 AATTTTCCCTATTATTTGAGTGAATATACAAAGGCTGCCTTATTATATGCTTCATATATA 981
| |||||||||||||||||||||||||||||||||| ||||| || ||||||||| ||||
Sbjct 1024 ACTTTTCCCTATTATTTGAGTGAATATACAAAGGCTACCTTAATACATGCTTCATTTATA 1083
Query 982 CATCTGAAGAAAAAAGAATATGTCCAATTTGTCTCCGACATGACCCCTATGAATCCAAGG 1041
|||||||||||||||||||||| ||| ||||||||||||||||||| | |||||||||||
Sbjct 1084 CATCTGAAGAAAAAAGAATATGCCCACTTTGTCTCCGACATGACCCATCTGAATCCAAGG 1143
Query 1042 ATATTGCTTTCTGGTCCCGCAGGGTCTGAAATATACCAAGAGACGTTAGCTAAAGCACTT 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 ATATTGCTTTCTGGTCCCGCAGGGTCTGAAATATACCAAGAGACGTTAGCTAAAGCACTT 1203
Query 1102 GCCCGTGACCTCGAGGCGAAATTGCTAATATTTGACAGCTATCCAATTTTGGGGTTTACA 1161
||| |||||| || |||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1204 GCCAATGACCTGGACGCGAAATTGCTAATATTTGACAGCCATTCAATTTTGGGGTTTACA 1263
Query 1162 AGAGGAAAGTTTTTGCATCTACACTTATT 1190
||||||||| |||||||||||||||||||
Sbjct 1264 AGAGGAAAGGTTTTGCATCTACACTTATT 1292
Score = 501 bits (271), Expect = 1e-140
Identities = 577/711 (81%), Gaps = 75/711 (11%)
Strand=Plus/Plus
Query 1 ATGGTGTCACCGGGACGGAGTGATTCTACCTCCGGCGAGAACAA-T-A-ACCCGCCCGAC 57
|||||||| |||||||||||||| |||||||||||||| ||||| | | ||| ||||||
Sbjct 1 ATGGTGTCTCCGGGACGGAGTGAATCTACCTCCGGCGACAACAATTCACCCCCTCCCGAC 60
Query 58 GGAAGCAGCG-GCAAGAGATCTCCATCTTCTCCCGCAGATAAATCTCCATCCAAACGCCA 116
|||||||||| | |||||| || || ||||||| ||||||||||||||||||||||||||
Sbjct 61 GGAAGCAGCGAG-AAGAGACCTTCACCTTCTCCAGCAGATAAATCTCCATCCAAACGCCA 119
Query 117 AAAGTTGGAA---------G-AT-GGC-G-----G----CGATACACTACCTCCTTCGGA 155
|||||||||| | | ||| | | |||||||||||||||| ||||
Sbjct 120 AAAGTTGGAAGGTGGCGGCGCTTCGGCGGCTAAAGAAACCGATACACTACCTCCTGCGGA 179
Query 156 TTCTAGTAAATGCGTGTTAGGCGACACTACTCCAACCTCTGGAGACTCCCAGATTGATGC 215
|||| ||||||||||||||||||||| |||| ||||||| | |||| || ||||||||||
Sbjct 180 TTCTGGTAAATGCGTGTTAGGCGACAATACTTCAACCTCCGAAGACGCCAAGATTGATGC 239
Query 216 CTCTGCGGCGGCTGCTACGACGTCGCAACCACCACCTGTTGC-----G--C-A-AGCGAT 266
|| ||||| ||||| ||||||| ||||||||||||| ||||| | | | | ||||
Sbjct 240 CTATGCGGTGGCTGTTACGACGGCGCAACCACCACCGGTTGCGGAAGGCTCAACACCGAT 299
Query 267 TTTGCAAGAGAAGGCAAGTTTTGAAAGATGGACATA-TGTACACAGTAGGTTTGAGAACC 325
|||| ||||||| |||| ||||| |||||||| ||| | ||||||||| ||||||| ||
Sbjct 300 TTTGGAAGAGAATGCAAATTTTGCAAGATGGATATACT-TACACAGTAAGTTTGAGTTCC 358
Query 326 CGTGGTGTCGATTGCTATCACAGTCTGCACAGTATCC-A--A--G--------C-AT-AA 370
|||||||||||||| |||||||||||||||||||||| | | | | || ||
Sbjct 359 CGTGGTGTCGATTGATATCACAGTCTGCACAGTATCCAAGCATTGAAATTTTTCAATCAA 418
Query 371 ---ACA-T-TT--TTCTA---T---CAG-TC-TTCAAATTCTTAGA-CGGAGAACTCAGT 414
||| | || ||||| | | | || |||| |||| ||| ||| |||||||||
Sbjct 419 CCTACACTGTTGGTTCTAGTGTAACCTGCTCTTTCACATTCGAAGACCGG-GAACTCAGT 477
Query 415 TCATACTCGTTCAAGATCACAAGAATTCAGCGCAAAGGCAATGTTTTAGCGGTTCTAGAG 474
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 478 TCATACTTGTTCAAGATCACAAGAATTCAGCGCAAAGGCAATGTTGTAGCGGTTCTAGAG 537
Query 475 ACCATGGGAAACAATGGACATATGT-GGATAAACGGAA-ATTATGCCGAGGGGAATA-TC 531
|| | ||||| | ||| || ||| || ||||| ||| || ||| ||| ||| | ||
Sbjct 538 ACTACAGGAAAGAGGGGATATGTGTTGG-TAAACAGAATAT-ATGTAGAGAAGAA-AGTC 594
Query 532 AACCATGTGCTAAACTCTGGTGACGAAGTGGTATATCAGCAAATGCCTATAGTTGCAGCA 591
|||||||||||||||||||||||||||||| ||||||||||| |||||| |||| |||||
Sbjct 595 AACCATGTGCTAAACTCTGGTGACGAAGTGATATATCAGCAACTGCCTAAAGTTCCAGCA 654
Query 592 AAACCTGGTTCAGTTCAGGTTCCTGCAGGAAAGTTTCTAGACCTAGAGAGA 642
||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 655 AAAGCTGGTTCAGTTCAGGTTCCTGCAGGAAAGTTTCTAGAGTTAGAGAGA 705
Score = 316 bits (171), Expect = 5e-85
Identities = 207/224 (92%), Gaps = 3/224 (1%)
Strand=Plus/Plus
Query 1225 GCTCTGACTGCTAAGGAAGTTGAGTCACTGAGGGATGGACTTGCTTCTAATAAGTCATGT 1284
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 GCTCTGGCTGCTAAGGAAATTGAGTCACTGAGGGATGGACTTGCTTCTAATAAGTCATGT 1359
Query 1285 AAGCTTCCCAATCAGAGTATTGAGCTCATTGATCAAGGGAAAAGCTCGGATTTGTCAGCC 1344
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1360 AAGCTTCCCAATCAGAGTATTGAGCTCATTGATCAAGGGAAAAGCCCGGATTTGTCAGCT 1419
Query 1345 GGTGGAGGAGTTGCTTCTAGCCTTTCTCCTGCTGCTTCTTCT-GATTCAGACTCACAGCT 1403
|||||||||||||||||||||| |||||| |||||||||||| | |||||||||||||||
Sbjct 1420 GGTGGAGGAGTTGCTTCTAGCCCTTCTCCGGCTGCTTCTTCTAG-TTCAGACTCACAGCT 1478
Query 1404 ACAGTTGGAGCCGGAGACTTTACCTCGTTCAGTGAATCATACTT 1447
| | ||||| ||||||||||| |||| |||| || || |||||
Sbjct 1479 AAATTTGGAACCGGAGACTTTGCCTCTTTCAAAGATTC-TACTT 1521
Score = 117 bits (63), Expect = 6e-25
Identities = 72/76 (95%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 1486 AAGATTCTACTTCAATCTTCTTGGATTTCTGGTTTGCGGATACTTCATTTGGAAGaaaaa 1545
|||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||
Sbjct 1510 AAGATTCTACTTCAATCTTCTTGGATTTCTGGTTGGCGGATACTTCATTTGAAA-AAAAA 1568
Query 1546 aaCACTTGCAGGGGAC 1561
|||||||||||| |||
Sbjct 1569 AACACTTGCAGGTGAC 1584
> Ahg315176 jgi|Araly1|315176|fgenesh1_pm.C_scaffold_2000209
Length=3144
Score = 603 bits (326), Expect = 4e-171
Identities = 654/802 (82%), Gaps = 63/802 (8%)
Strand=Plus/Plus
Query 2001 ACTTCTAGCGGAGCTCTTTGAGAATAAAATTACTATTCA-GATGCCACAGGATGAGAAAC 2059
||||||| || | ||||||| ||||||| |||| ||| | || |||||||| |||| | |
Sbjct 1830 ACTTCTAACGAATCTCTTTGGGAATAAAGTTACCATTTACGA-GCCACAGGGTGAGGATC 1888
Query 2060 GTCTTACAT-TGTGGAAGCATCAAATGGATCGTGATGCTGAGACTTCGAAAGTGAAGTCT 2118
||||| || | |||||| |||| ||||||||||||||||||||| |||| ||| ||
Sbjct 1889 TTCTTAAATCT-TGGAAGTATCATTTGGATCGTGATGCTGAGACTTTGAAAACAAAGGCT 1947
Query 2119 AACT-TCAATCACTTGCGCATGGTGTTGCGACGACGTGGTCTAGGA-TGTGAAGGAC-TT 2175
|| | |||||||||||||||||||||| ||||| |||| || || |||||||| | ||
Sbjct 1948 AA-TCGCAATCACTTGCGCATGGTGTTGGGACGATTTGGTATA-GATTGTGAAGG-CATT 2004
Query 2176 GAGACGACGTGGTCTAGGATGTGCCTGAAGGATCTCACACTTCAAAGAGACAGTGTAGAA 2235
|| ||| | | ||||| |||||||||||||||||||||| ||||||| ||||
Sbjct 2005 --GA-GAC---G-C-----TGTGCATGAAGGATCTCACACTTCAAAGTGACAGTGCAGAA 2052
Query 2236 AAGATCATTGGATGGGCTTTTGGTAACCATAT-AAGCAAAAATCCTGATACTGATCCAG- 2293
|||||||||||||||||| || || ||||||| ||| ||||||||| |||||||||
Sbjct 2053 AAGATCATTGGATGGGCTCTTAGTCACCATATAAAG-TGTAATCCTGATGCTGATCCAGA 2111
Query 2294 -CTAAG-GTTACTTTGTCTCGAGAGAGCATAGAATTTGGAATAGGACTCTTACAGAATGA 2351
| || || |||||||||| || ||| || ||| |||||||| |||||| ||| |
Sbjct 2112 TGTTAGTGTCACTTTGTCTCTTGATAGCTTAAAATGTGGAATAGAACTCTTTCAGGCTCT 2171
Query 2352 TCTAAAAGGTTCTACGAGCTC--A-AAG------AAGGACATTGTGGTAGAAAATGTG-T 2401
| |||| | ||| |||| | | ||| |||||||||||| || || | || |
Sbjct 2172 TGTAAATGAAACTAAGAGCCCGAAGAAGTCTCTCAAGGACATTGTGACAG-AAGT-TGAT 2229
Query 2402 TTGAGAAGAGGCTTCTAAGTGATGTAATTCTGCCCAGTGACATTGATGTTACATTTGATG 2461
|| | ||| |||||||||| |||| |||||||||||||| ||||||||||||||
Sbjct 2230 TT-TG-AGA------TAAGTGATGTTATTCCGCCCAGTGACATTGGTGTTACATTTGATG 2281
Query 2462 ACATTGGGGCACTTGAGAAAGTCAAAGATATC-TTAAAGGAACTGGTTATGCTTCCTTTA 2520
||||||||||||||||||| |||||||| | | ||||||||| |||||||||||||||||
Sbjct 2282 ACATTGGGGCACTTGAGAATGTCAAAGACA-CTTTAAAGGAATTGGTTATGCTTCCTTTA 2340
Query 2521 CAACGGCCTGAACTTTTCTGC-AAGGGGGAATTAACAAAGCCTTGTAAAGGAATTCTTTT 2579
||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||| ||
Sbjct 2341 CAACGGCCTGAACTTTTCTGCCAAGGGC-AATTAACAACGCCTTGTAAAGGAATTCTCTT 2399
Query 2580 ATTTGGACCTCCTGGAACTGGAAAGACCATGCTTGCAAAAGCAGTGGCAAAGGAAGCTGA 2639
|||||||||| |||||||||||||||||||||||||||| ||| |||||| ||||||||
Sbjct 2400 ATTTGGACCTGCTGGAACTGGAAAGACCATGCTTGCAAAGGCATTGGCAACGGAAGCTGG 2459
Query 2640 TGCGAACTTCATCAACATCTCAATGTCAAGCATCACATCTAAGTGGTTTGGTGAGGGTGA 2699
||| || || |||||||||||||||||||| ||||||| ||||||||||
Sbjct 2460 TGCTAATTTGATCAACATCTCAATGTCAAG------------GTGGTTTAGTGAGGGTGA 2507
Query 2700 GAAGTATGTCAAAGCTGTCTTTTCTTTGGCCAGTAAAATGTCCCCTAGCGTTATCTTTGT 2759
||| |||||||||||||||||||| |||||||||||||| ||||||||| |||||||| |
Sbjct 2508 GAAATATGTCAAAGCTGTCTTTTCGTTGGCCAGTAAAATCTCCCCTAGCATTATCTTTAT 2567
Query 2760 GGACGAGGTGGACAGCATGCTA 2781
|||| |||||||||||||||||
Sbjct 2568 GGACAAGGTGGACAGCATGCTA 2589
Score = 573 bits (310), Expect = 3e-162
Identities = 450/516 (87%), Gaps = 16/516 (3%)
Strand=Plus/Plus
Query 2829 AAATGAGTTCATGATGCATTGGGACGGTCTTACGACTCAGGAAAGGGAACGTGTTCTGGT 2888
|||||||||||| || ||||||||||||| | ||| | |||| ||||| |||||||||
Sbjct 2610 AAATGAGTTCATAATAAATTGGGACGGTCTGAGGACAAACGAAAAGGAACATGTTCTGGT 2669
Query 2889 CCTTGCAGCCACAAATCGGCCTTTTGACCTTGATGAGGCTGTTATTAGACGGTTGCCCCG 2948
|||||| |||||||| | ||||||||||||||||||||||| |||||| ||||||| |
Sbjct 2670 TCTTGCATCCACAAATAGACCTTTTGACCTTGATGAGGCTGTCATTAGAAGGTTGCCTCA 2729
Query 2949 TAGGTTGATGGTGGGACTACCAGATACTTC-AAATAGAGCATTTATATTAAAGGTTATAC 3007
||||||||||||||||||||||||| | || | ||||||| ||||| ||||||||||
Sbjct 2730 TAGGTTGATGGTGGGACTACCAGATGC-TCTGAGTAGAGCAAAGATATTGAAGGTTATAC 2788
Query 3008 TTGCAAAAGAAGACTTGTCCCCTGATTTGGATATTGGTG-AGATTGCTAGTATGACTAAT 3066
|||||||||||||||||||||||||||| ||||| | || || |||||||||||||||||
Sbjct 2789 TTGCAAAAGAAGACTTGTCCCCTGATTTTGATATCGATGCAG-TTGCTAGTATGACTAAT 2847
Query 3067 GGATATTCTGGAAGTGATCTTAAGAATCTATGTGTTACTGCTGCCCACCGTCCAATCAAG 3126
||||||||||||| ||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 2848 GGATATTCTGGAAACGATCTTAAGAATCTATGTGTTACTGCTGCCCGCTGTCGAATCAAG 2907
Query 3127 GAGATATTGGAGAAGGAAAAAAGAGAGCGAGATGCTGCTCTGGCTCAAGGCAA-AGTTCC 3185
|||||| |||||||||||||||| ||||||||||||||||||||| |||| || ||||||
Sbjct 2908 GAGATAGTGGAGAAGGAAAAAAGTGAGCGAGATGCTGCTCTGGCTGAAGG-AAGAGTTCC 2966
Query 3186 TCCACCTCTAAGTGGAAGTTCTGATCTCCGAGCTTTAAACGTGGAGGATTTCAGAGACGC 3245
|||| | | |||||||||||||||| |||||||||||||| | |||||||||||| ||||
Sbjct 2967 TCCAGCACGAAGTGGAAGTTCTGATATCCGAGCTTTAAACATAGAGGATTTCAGAAACGC 3026
Query 3246 ACATAAG-TGG-GTGTCTGCGAGCGTCTCATCAGAGTCTGCGA-CTATGACAGCGCTTC- 3301
|| | || ||| | || || ||||||||||||||||||| || | |||||||||||||
Sbjct 3027 ACTTGAGCTGGTGAGTATG--AGCGTCTCATCAGAGTCTGTGAAC-ATGACAGCGCTTCG 3083
Query 3302 AACAATGGAACAAAC-TCCACGGGGAAGGTGGATCC 3336
|| |||||||| ||| | |||||||||||||||||
Sbjct 3084 AA-AATGGAACGAACATT-ACGGGGAAGGTGGATCC 3117
Score = 416 bits (225), Expect = 5e-115
Identities = 350/410 (85%), Gaps = 10/410 (2%)
Strand=Plus/Plus
Query 1555 AGGGGACCTCCTAATGGGACTACAGGGAAAGTAATTTTAGTGTTTGATGAGAATCCTTCA 1614
|||||||| ||| ||||| || |||||||||| ||||||| ||||||||||||||||||
Sbjct 1426 AGGGGACCACCTTATGGGGTTAGAGGGAAAGTACTTTTAGTATTTGATGAGAATCCTTCA 1485
Query 1615 GCTAAAGTGGGTGTTAGATTTGATAAGCCAATACCTGATGGAGTTGATCTTGGTGAACTA 1674
||||||||||||||||||||||| || ||| || |||||| |||||||||||||||||
Sbjct 1486 GCTAAAGTGGGTGTTAGATTTGAGAATCCAGTAGTTGATGGCGTTGATCTTGGTGAACTG 1545
Query 1675 TGTGAAA-GCGGACATGGGTTCTTCTGCAAAGCTACTGATCTTCCGTTCAAAAGCTCGAG 1733
||||||| | ||||||||||||||||||| ||||||||||||| ||| |||||||| |
Sbjct 1546 TGTGAAATG-GGACATGGGTTCTTCTGCAGTGCTACTGATCTTCAGTTTGAAAGCTCGGG 1604
Query 1734 TTTTAAGGATCTAGTTAGA-TTACTTGTTAACACA-TTGTTTGAGGTTGTCCATTCTGAG 1791
|| | |||||||| | || |||||||||| | || ||||||||||||| |||| ||||
Sbjct 1605 TTCTGAGGATCTAAAT-GAATTACTTGTTAGC-CAATTGTTTGAGGTTGCCCATGATGAG 1662
Query 1792 AGCAGAACTTGTCCGTTTATTCTATTTTTGAAAGATGCTGAGAAA-TCTGTTGCTGGAAA 1850
||||||||||||||| |||||||||| ||||||||| |||| || | | ||| ||||||
Sbjct 1663 AGCAGAACTTGTCCGGTTATTCTATTCCTGAAAGATGATGAGGAAGTTT-TTGTTGGAAA 1721
Query 1851 CTTC-GATTTGTACTCTGCGTTCCAAATCAGACTTGAATATCTCCCAGAAAACGTAATTG 1909
||| ||||| | |||||| ||| ||| || | ||||| | ||||||| ||||||||||
Sbjct 1722 -TTCCGATTTCTGCTCTGCATTCAAAAGCAAAGTTGAAGAAATCCCAGATAACGTAATTG 1780
Query 1910 TGATCTGTTCACAGACACACTCAGATCATCTCAAGGTGAAGGATATTGGA 1959
|||||||||||||||||||||| ||| ||| ||||| |||||||||||||
Sbjct 1781 TGATCTGTTCACAGACACACTCTGATAATCACAAGGAGAAGGATATTGGA 1830
Score = 246 bits (133), Expect = 7e-64
Identities = 262/322 (81%), Gaps = 18/322 (6%)
Strand=Plus/Plus
Query 850 CAATCTGCAATATTCA-GAGAAGCCATTCAAGCTGGTTTTGTTAG-AGGCGAAAACA-TG 906
||| |||||| ||||| || || ||||||||||| ||||| | ||||| ||| | ||
Sbjct 826 CAAGCTGCAAGATTCAGGA-AATATATTCAAGCTGGAATTGTT-GAAGGCG-AAAGATTG 882
Query 907 GAAGTTTCATTCAAAAATTTTCCCTATTATTTGAGTGA-ATATACAAAG-GCTGCCTTAT 964
|| |||||||| |||||||||| |||||||||||||| | |||||||| | | ||||
Sbjct 883 AAATTTTCATTCGAAAATTTTCCTTATTATTTGAGTGAGA-ATACAAAGAAC-GTCTTAC 940
Query 965 TATATGCTTCATATATACATCTG----AAGA-AA-AAAGAATATGTCCAATTTGTCTCCG 1018
|| || |||| ||||||||||| |||| || | || ||||| || || || |||||
Sbjct 941 TAGCTGTTTCACATATACATCTGAACAAAGAGAATACAGGATATGCCCTATATGCCTCCG 1000
Query 1019 ACATGACCCCTATGAATCCAAGGATATTGCTTTCTGGTCCCGCAGGGTCTGAAATATACC 1078
|| | ||| || |||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1001 ACTTTACCACTTTGAATCCAAGGATATTGCTTTCTGGTCCTGCAGGAACTGAAATATACC 1060
Query 1079 AAGAGACGTTAGCTAAAGCACTTGCCCG-TGACCTCGAGGCGAAATTGCTAATATTTGAC 1137
|||||| |||||||||||||||||| | || || |||||||||||||||| ||||||
Sbjct 1061 AAGAGATATTAGCTAAAGCACTTGCCAAAT-ACTTCAAGGCGAAATTGCTAATTTTTGAC 1119
Query 1138 AGCTATCCAATTTTGGGGTTTA 1159
|| |||||||||||||| |||
Sbjct 1120 GGCCATCCAATTTTGGGGGTTA 1141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128368193729
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5