BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G24930.1 Length=1092 Score E Sequences producing significant alignments: (Bits) Value Ahg945606 jgi|Araly1|945606|scaffold_701835.1 1066 0.0 Ahg898845 jgi|Araly1|898845|Al_scaffold_0005_2811 385 4e-106 Ahg913716 jgi|Araly1|913716|Al_scaffold_0001_3970 255 4e-67 Ahg895403 jgi|Araly1|895403|Al_scaffold_0006_3399 255 4e-67 Ahg492344 jgi|Araly1|492344|fgenesh2_kg.7__1777__AT4G24940.1 100 2e-20 > Ahg945606 jgi|Araly1|945606|scaffold_701835.1 Length=721 Score = 1066 bits (577), Expect = 0.0 Identities = 661/702 (94%), Gaps = 4/702 (1%) Strand=Plus/Plus Query 123 GTAA-CCATAAACTACAAACATGAGTTTGGTCGCCAGTTTGCAACTCATCCTCCCGCCAC 181 |||| |||||||||| ||||||||||||||||| |||||| ||||||||||||||||||| Sbjct 1 GTAACCCATAAACTAGAAACATGAGTTTGGTCGGCAGTTTACAACTCATCCTCCCGCCAC 60 Query 182 GGCCGAGAAGCACCAAGTTGTTGTGCTCATTGCAAAGCCCAAAACAAGAACAAG-A-A-C 238 ||||||||||||||||||| ||||||||| || ||||||||| ||||| ||||| | | | Sbjct 61 GGCCGAGAAGCACCAAGTTCTTGTGCTCAATGAAAAGCCCAACACAAGGACAAGAAGACC 120 Query 239 TCTCTTCTACTTCTCCTCCAATCTCTCTTTTACCAAAACTAATCTCTTTTGCTCTTGCTA 298 |||||||| |||||||| |||||||||| || |||||||||||||| |||||||||||| Sbjct 121 TCTCTTCTTCTTCTCCTTCAATCTCTCTCTTGCCAAAACTAATCTCGTTTGCTCTTGCTC 180 Query 299 TCTCTCTAACTTCCTTTTCCCCTGCCTTAGCCATTCCTTCTCTCTCCTCTTCTCAGCCAC 358 ||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TCTCTCTTACATCCTCTTCCCCTGCCTTAGCCATTCCTTCTCTCTCCTCTTCTCAGCCAC 240 Query 359 TCACCACTCCTTTCACCCAATCCAAGTTCGTCCAGACCGGTCTTCTCAATGGCAAAATTA 418 |||| ||||||||||||||||||||||| || ||||| |||||||||||||||||||||| Sbjct 241 TCACTACTCCTTTCACCCAATCCAAGTTTGTGCAGACTGGTCTTCTCAATGGCAAAATTA 300 Query 419 GGCCTTGCCCTTCCACGAACCCAGGATGTGTATCGACGAATCCAACCTCATCTTCCTTCT 478 | ||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| Sbjct 301 GACCTTGCCCTTCCACGAACCCAGGCTGTGTATCCACGAATCCGACCTCATCTTCCTTCT 360 Query 479 CTTTTCCATTGACGATCCCAGAAACCGATACACAGGATCCCATTGAGAAACTGAAAGAAG 538 | ||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||| Sbjct 361 CATTTCCATTGACGATCCCAGAAACTGATACACAAGATCCCATTCAGAAACTGAAAGAAG 420 Query 539 CAATAATGAGCACCCAGAAGAACCCCAAGTTTGTGGTTCTTGAAGATACTCCCTATGGGA 598 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 421 CAATAATGAGCACCCAGAAGAACCCCAAGTTTGTGGTTCTTGAAGATACTCCATACGGGA 480 Query 599 GGTATGTGGAGGCAGAGGTAGAAGGAGGAGGATTTAGCAGAGATGTGATGGAGTTTTTGG 658 | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 GATATTTGGAGGCAGAGGTAGAAGGAGGAGGATTTAGCAGAGATGTGATGGAGTTTTTGG 540 Query 659 TGAAGCAAGATGTGGTTGCTTACAGGTGTATGGCCACTAAGGTTACCTTTGTGTATCCTT 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TGAAGCAAGATGTGGTTGCTTACAGGTGTATGGCCACTAAGGTTACCTTTGTGTATCCTT 600 Query 719 TCACCACTGCTTTTGGAGACTCCAAGGGACAAGAAGAGAGGTTGAAGAAGCTCATCGATC 778 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 601 TCACCACTGCTTTTGGAGACTCCAAGGGACAAGAAGAGAGGATGAAGAAGCTCATCGACC 660 Query 779 AGCTTGGTTGGTATGCTCCTACCTTTGAATCTATGGAATAAA 820 ||||||||||||||||||||||||||||||| ||||| |||| Sbjct 661 AGCTTGGTTGGTATGCTCCTACCTTTGAATCCATGGAGTAAA 702 > Ahg898845 jgi|Araly1|898845|Al_scaffold_0005_2811 Length=366 Score = 385 bits (208), Expect = 4e-106 Identities = 260/285 (91%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 241 TCTTCTACTTCTCCTCCAATCTCTCTTTTACCAAAACTAATCTCTTTTGCTCTTGCTATC 300 |||||| |||||||| |||||||||| ||||||||||||||||| |||||| ||||| | Sbjct 79 TCTTCTTCTTCTCCTTCAATCTCTCTCTTACCAAAACTAATCTCGTTTGCTATTGCTCTA 138 Query 301 TCTCTAACTTCCTTTTCCCCTGCCTTAGCCATTCCTTCTCTCTCCTCTTCTCAGCCACTC 360 ||||| || |||| ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 139 TCTCTTACATCCTCTTCCCCTGCCTTAGCCATTCCTTCTTTCTCCTCTTCTCAGCCACTC 198 Query 361 ACCACTCCTTTCA---CCCAATCCAAGTTCGTCCAGACCGGTCTTCTCAATGGCAAAATT 417 ||||||||||||| ||||||||||||| || |||| ||||||||||||||||||||| Sbjct 199 ACCACTCCTTTCAGTACCCAATCCAAGTTTGTGCAGATTGGTCTTCTCAATGGCAAAATT 258 Query 418 AGGCCTTGCCCTTCCACGAACCCAGGATGTGTATCGACGAATCCAACCTCATCTTCCTTC 477 || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 259 AGACCTTGCCCTTCCACGAACCCAGGTTGTGTATCGACGAATCCGACCTCATCTTCCTTC 318 Query 478 TCTTTTCCATTGACGATCCCAGAAACCGATACACAGGATCCCATT 522 || |||||||||||||||| ||||||||| |||||||||||||| Sbjct 319 TCATTTCCATTGACGATCCGTGAAACCGATGCACAGGATCCCATT 363 > Ahg913716 jgi|Araly1|913716|Al_scaffold_0001_3970 Length=339 Score = 255 bits (138), Expect = 4e-67 Identities = 238/282 (84%), Gaps = 24/282 (9%) Strand=Plus/Plus Query 241 TCTTCTACTTCTCCTCCAATCTCTCTTTTACCAAAACTAATCTCTTTTGCTCTTGCTATC 300 |||||| |||||||| |||||||||| ||||||||||||||||| |||||| |||| | Sbjct 79 TCTTCTTCTTCTCCTTCAATCTCTCTCTTACCAAAACTAATCTCGTTTGCTAGTGCTCTA 138 Query 301 TCTCTAACTTCCTTTTCCCCTGCCTTAGCCATTCCTTCTCTCTCCTCTTCTCAGCCACTC 360 ||||| || |||| ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 139 TCTCTTACATCCTCTTCCCCTGCCTTAGCCATTCCTTCTTTCTCCTCTTCTCAGCCACTC 198 Query 361 ACCACTCCTTTCACCCAATCCAAGTTCGTCCAGACCGGTCTTCTCAATGGCAAAATTAGG 420 ||||||||||||| | | | ||| | || | || ||||||||| Sbjct 199 ACCACTCCTTTCAG----T--A----C--CCA-A----TC--C--AA---CAAAATTAGA 234 Query 421 CCTTGCCCTTCCACGAACCCAGGATGTGTATCGACGAATCCAACCTCATCTTCCTTCTCT 480 ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 235 CCTTGCCCTTCCACGAACCCAGGTTGTGTATCGACGAATCCGACCTCATCTTCCTTCTCA 294 Query 481 TTTCCATTGACGATCCCAGAAACCGATACACAGGATCCCATT 522 |||||||||||||||| ||||||||| |||||||||||||| Sbjct 295 TTTCCATTGACGATCCGTGAAACCGATGCACAGGATCCCATT 336 > Ahg895403 jgi|Araly1|895403|Al_scaffold_0006_3399 Length=339 Score = 255 bits (138), Expect = 4e-67 Identities = 238/282 (84%), Gaps = 24/282 (9%) Strand=Plus/Plus Query 241 TCTTCTACTTCTCCTCCAATCTCTCTTTTACCAAAACTAATCTCTTTTGCTCTTGCTATC 300 |||||| |||||||| |||||||||| ||||||||||||||||| |||||| |||| | Sbjct 79 TCTTCTTCTTCTCCTTCAATCTCTCTCTTACCAAAACTAATCTCGTTTGCTAGTGCTCTA 138 Query 301 TCTCTAACTTCCTTTTCCCCTGCCTTAGCCATTCCTTCTCTCTCCTCTTCTCAGCCACTC 360 ||||| || |||| ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 139 TCTCTTACATCCTCTTCCCCTGCCTTAGCCATTCCTTCTTTCTCCTCTTCTCAGCCACTC 198 Query 361 ACCACTCCTTTCACCCAATCCAAGTTCGTCCAGACCGGTCTTCTCAATGGCAAAATTAGG 420 ||||||||||||| | | | ||| | || | || ||||||||| Sbjct 199 ACCACTCCTTTCAG----T--A----C--CCA-A----TC--C--AA---CAAAATTAGA 234 Query 421 CCTTGCCCTTCCACGAACCCAGGATGTGTATCGACGAATCCAACCTCATCTTCCTTCTCT 480 ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 235 CCTTGCCCTTCCACGAACCCAGGTTGTGTATCGACGAATCCGACCTCATCTTCCTTCTCA 294 Query 481 TTTCCATTGACGATCCCAGAAACCGATACACAGGATCCCATT 522 |||||||||||||||| ||||||||| |||||||||||||| Sbjct 295 TTTCCATTGACGATCCGTGAAACCGATGCACAGGATCCCATT 336 > Ahg492344 jgi|Araly1|492344|fgenesh2_kg.7__1777__AT4G24940.1 Length=1277 Score = 100 bits (54), Expect = 2e-20 Identities = 63/67 (94%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 10 CTTCTCTGAGCATTAGCGCCCCAAACCCTAATCTGGCGGTCGTACAAGGCAGTCTCCTGC 69 ||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 192 CTTCTTTGAGCATTAGCGCCCCAAACCCTAATCTGACGGTCGTACAAAGCAGTCTCCTGC 133 Query 70 TCG-TAA 75 ||| ||| Sbjct 132 TCGGTAA 126 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40677152439 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5