BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G24960.1
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945603 jgi|Araly1|945603|scaffold_701832.1 688 0.0
> Ahg945603 jgi|Araly1|945603|scaffold_701832.1
Length=453
Score = 688 bits (372), Expect = 0.0
Identities = 426/452 (94%), Gaps = 4/452 (1%)
Strand=Plus/Plus
Query 105 TTGCAAAGGAAGAAAAACAATGG---ACAAATTTTGGACTTTCCTCACTGCTCTTCATTC 161
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 3 TTGCAAAGGAAGAAAAA-AATGGACAACAAATTTTGGACTTTCCTCACTGCTCTTCATTC 61
Query 162 AGGCGCTGGGCCTATCGTGATGTTACTTTATCCATTGTACGCATCGGTGATAGCAATGGA 221
|||||||||||| || |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 62 AGGCGCTGGGCCCATAGTGATGTTGCTGTATCCATTGTACGCATCGGTGATAGCAATGGA 121
Query 222 GAGCACAACAAAAGTGGACGATGAACAGTGGCTTGCGTATTGGATAATATATTCGTTCCT 281
||||||||||||||| ||||||||||||||||| ||||| ||||||||||| || |||||
Sbjct 122 GAGCACAACAAAAGTTGACGATGAACAGTGGCTCGCGTACTGGATAATATACTCCTTCCT 181
Query 282 CTCACTCACGGAACTGATTCTGCAATCGCTTATTGAGTGGATTCCGATTTGGTATACGGT 341
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TTCACTCACGGAACTGATTCTGCAATCGCTTATTGAGTGGATTCCGATTTGGTATACGGT 241
Query 342 GAAACTTGTGTTCGTGGCTTGGCTAGTTCTTCCTCAGTTTCAAGGCGCAGCTTTTATCTA 401
|||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 242 GAAACTTGTGTTCGTGGCTTGGCTTGTTCTGCCGCAGTTTCAAGGCGCAGCTTTTATCTA 301
Query 402 CAACCGTGTTGTTAGAGAACAGTTCAAGAAACACGGCGTCCTCCGCTCCACCCACTCCAA 461
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 302 CAACCGTGTGGTTAGAGAACAGTTCAAGAAACACGGCGTCCTCCGCTCCTCCCACTCCAA 361
Query 462 GCCCACCAAGCCCAACATCCTCCACTCCATTTTCCCCCACCGGGAGGGACACGAGGCTCA 521
| ||||||||||||| |||||||| |||||||||||| ||||||||||||| ||||||||
Sbjct 362 GGCCACCAAGCCCAATATCCTCCAGTCCATTTTCCCCAACCGGGAGGGACAGGAGGCTCA 421
Query 522 CAGTCACTGAATCAGAAGGGTGGAGCAGACAG 553
|||||||||||||||||| | |||||||||||
Sbjct 422 CAGTCACTGAATCAGAAGAGAGGAGCAGACAG 453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29240277339
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5