BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G24990.1 Length=909 Score E Sequences producing significant alignments: (Bits) Value Ahg492339 jgi|Araly1|492339|fgenesh2_kg.7__1772__AT4G24990.1 1251 0.0 > Ahg492339 jgi|Araly1|492339|fgenesh2_kg.7__1772__AT4G24990.1 Length=900 Score = 1251 bits (677), Expect = 0.0 Identities = 849/924 (92%), Gaps = 43/924 (5%) Strand=Plus/Plus Query 1 AGAAGTGACGACgaaaagaaaggggaaaaaaaaaaggaaggaaaaaagtgaaaaCCGTCG 60 ||||||||||||||||||||| | |||||| || |||||| |||||||||| Sbjct 1 AGAAGTGACGACGAAAAGAAA--TG----AAAAAA--AA--AAAAAA---AAAACCGTCG 47 Query 61 GCTTGAGAAGGAACTTTGATATTTGGTGA--C-TCTTGAAAAAAG--CAAGC-TCTTTCT 114 | ||||||||||||||||||||||||||| | ||||| |||||| | | |||| || Sbjct 48 GTTTGAGAAGGAACTTTGATATTTGGTGACTCTTCTTG-AAAAAGCTCTTTCTTCTTCCT 106 Query 115 T-CTTC--CTTCTTTCGCTTTTTTCACACCTCAAAATCAAAGATCCGAAACACGATTTCG 171 | |||| |||||||||| ||||||||||||| |||||||||||||| || |||| || Sbjct 107 TCCTTCTTCTTCTTTCGC-TTTTTCACACCTC-AAATCAAAGATCCG-AAGACGA--TC- 160 Query 172 GAGGAAGCTTCGA-T-TCTAC--CTATTTTCAGATCTGAAATAGTTGTGTTTGAGAAGCG 227 ||||||| ||| | ||||| | |||||||||||||||||||||||||||||||||| Sbjct 161 CCGGAAGCTACGATTGTCTACTTTTTTTTTCAGATCTGAAATAGTTGTGTTTGAGAAGCG 220 Query 228 GGATTGGTGATCGGAGCTGGAATTTGGTTGGTAATCGGAGGTCAGAGAGAAGTCAACGGA 287 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 221 GGATTGGTGATCGGAGCTGGAATTTGG-TGGTAATCGGAGGTCAGAGAGAAGTCAACGGA 279 Query 288 TATGCCGGAGGAAGAATCGATAGATATCAAATTCAGGTTGTACGATGGCTCCGATATCGG 347 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 280 TATGCCGGAGGAAGAGTCGATAGATATCAAATTCAGGTTGTACGATGGCTCCGATATCGG 339 Query 348 GCCTTTTCGGTATTCTGCGGCTTCTACTGTTGACTTTTTGAAGCAGAGGGTCGTCTCTGA 407 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 340 GCCTTTTCGGTATTCTGCGGCTTCTACTGTTGATTTTTTGAAGCAGAGGGTCGTCTCTGA 399 Query 408 TTGGCCCAAAGGCAAAACAGTTGTTCCAAAGGGGATAAACGAAGTGAAGCTGATAAGCTC 467 |||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| Sbjct 400 TTGGCCCAAAGGCAAAACAGTTGTGCCAAAAGGGATAAATGAAGTGAAGCTGATAAGCTC 459 Query 468 GGGTAAGATCTTGGAGAACAACAAGACTGTTGGGCAGTGTAAGACACCATTTGGAGATAT 527 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 460 GGGTAAGATCTTGGAGAACAACAAGACTGTCGGGCAGTGTAAGACACCATTTGGAGAGAT 519 Query 528 TGCTGGTGGAGTCATTGTGATGCATGTTGTTGTACAGCCTTCTCTAGCTAAATCCAAAAC 587 |||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||| Sbjct 520 TGCTGGTGGAGTCATTGTCATGCATGTTGTTGTACAGCCATCTCTAGCTAAAACCAAAAC 579 Query 588 AGAGAAGAAGGTTGATAAAGCACCAAAGGCAGTAATCTGCACATGCACCATTTTGTGAAG 647 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 580 AGAGAAGAAGGTTGATAAAGCACCAAAGGCGGTAATCTGCACATGCACCATTTTGTGAAG 639 Query 648 GGAGGAAGACCAATGTATCTATCATACACATCGTTTCAATTCTTCCGGTACAGAAGaaaa 707 |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 640 GGAGCAAGACCAATGTATCTATCATACACATCGTTTCAATTCTTCAGGTACAGAAGAAAA 699 Query 708 caaaatcaaaaaaagaaagctaaaagtaaagtaaagCTTCCCTTTAAGCTGTGGAGTTAT 767 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 700 CAAAATCAAAAAA-GAAAGCTAAAAGTAAAGTAAAGCTTCCCTTTAAGCTGTGGAGTTAT 758 Query 768 -TT-ATCATCTTTGAATGTGTAGAAAATGAACTATAAATTCTTTTCAAGTAACTCTTTGT 825 || || ||||||||||||||||||| ||||||| || |||||||||||||||||||||| Sbjct 759 ATTTATTATCTTTGAATGTGTAGAAATTGAACTA-AA-TTCTTTTCAAGTAACTCTTTGT 816 Query 826 CCCTTATTTGTTTTTT----CTTCTTACTTTCCCAATGTATGGAAGCTGTATAGGTTACT 881 ||||| |||||||||| ||||||||||||| |||||| ||||| ||||||||||||| Sbjct 817 CCCTTCTTTGTTTTTTTTTTCTTCTTACTTTCCGAATGTACGGAAGTTGTATAGGTTACT 876 Query 882 AGGTCCATTACGTTACGTGTGATG 905 ||||||||||| |||||||||||| Sbjct 877 AGGTCCATTACATTACGTGTGATG 900 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33700658628 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5