BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25070.2
Length=2570
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492332 jgi|Araly1|492332|fgenesh2_kg.7__1765__AT4G25070.1 2627 0.0
> Ahg492332 jgi|Araly1|492332|fgenesh2_kg.7__1765__AT4G25070.1
Length=2287
Score = 2627 bits (1422), Expect = 0.0
Identities = 1693/1819 (93%), Gaps = 38/1819 (2%)
Strand=Plus/Plus
Query 563 ACGACAGTGATGAAATTACAGAGGATGTTCCCCGGAATCCAGTGGAGA-TT-AGG--GGT 618
||||| |||||||||||| || ||||| | ||||| ||||||||||| || || ||
Sbjct 491 ACGACGGTGATGAAATTATAGCCGATGTGCGCCGGATTCCAGTGGAGATTTCTGGAAGGA 550
Query 619 CCGGTCA-GAG--GAAAAGTAGCTCCGGCGGTCAAACCCGTAGTCGTTCTTCCGACTAAA 675
| | | | | | |||| |||||| |||| ||| || ||||||| | || |||||
Sbjct 551 ATGCT-AGGGGTCGGAAAGAAGCTCCCACGGTGAAA-CC--AGTCGTTAATACGCCTAAA 606
Query 676 TTTGACGATGAATACGACAGTGATGAAATTACAGAGGATGTTCCCCGGAATCCAGTGGAG 735
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 607 TTTGACGATGAATACGACAGTGATGAAATTACAGCGGATGTTCCCCGGAATCCAGTGGAG 666
Query 736 ATTAGGGGTACC-GTCAGAGGAAAAGTAGCTCCGGCGGTCAAACCCGTAGTCGTTCTTCC 794
|||| |||| || |||||||| ||||||||||||||||| |||||| |||||||||||
Sbjct 667 ATTA-GGGTCCCGGTCAGAGGGAAAGTAGCTCCGGCGGTGAAACCC---GTCGTTCTTCC 722
Query 795 GACTAAATTTGACGATGAATACGATAGTGATGAAATTACAGCCGATGTGTCCCGGAATCC 854
||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 723 GACTAGATTTGACGATGAATATGATAGTGATGAAATTACAGCCGAGGTGTCCCGGAATCC 782
Query 855 AGTGGAG-GTTAGGGATCCAGTCAGAGGG-AAGTTAGCTCCGGTGGTGAAACCCGTCGTT 912
||||| | || | || ||| ||||||||| ||| ||||||||| ||||||||||||||||
Sbjct 783 AGTGGGGAGTAAAGG-TCCGGTCAGAGGGAAAG-TAGCTCCGGCGGTGAAACCCGTCGTT 840
Query 913 CTTCCGACTAAATTTGACGATGAA-TACGATAGTGACGAAATTGCAGCTGATGTCTCC-C 970
||||||||||||| |||||||||| | ||| |||||||||||||| || ||||| || |
Sbjct 841 CTTCCGACTAAATATGACGATGAACT-CGACAGTGACGAAATTGCGGCCGATGT-GCCTC 898
Query 971 GGAAGGC-AGTGGAGATTCCTCAAAAGAAT-GAAAAGAGTACACTCAGGGTTAGAGTCCC 1028
|||| || |||||||||||||||||||||| |||||| || |||||||||||||||| ||
Sbjct 899 GGAA-GCAAGTGGAGATTCCTCAAAAGAATGGAAAAG-GTGCACTCAGGGTTAGAGTTCC 956
Query 1029 GGCATATTCACGTCGGAATCCGTTGGAGGAATTTGAGCAGAACGGAGAAGACAAGCAAAA 1088
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 957 GGCATATTCACGTCGGAATCCGTTGGAGGAATTTGAGCAGAACGGAGAAGAAAAGCAAAA 1016
Query 1089 TGTTCAATGTGATGTGCCTGCTAAACAATCGGAAGCTCAATTAAAGTATAAGAAAA-GTT 1147
|||||| | |||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1017 TGTTCAGTTTGATGTGCCTGCAAAACAATCGGAAGCTCAATTAAAGTATAAGAAAAGGTT 1076
Query 1148 TCAGGTACCATCCTGCAAATATTTTAGCACCTAATAACTCTAACCAGCAGGAAGATGATC 1207
||| | | ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TCA--T---A--CTGCAGATATTTTAGCACCTAATAACTCTAACCAGCAGGAAGATGATC 1129
Query 1208 GAGAAGCTTCAGCCCTGCGTGATGAATTAGACATGCTTCAAGAAGAAAACGATAATATAA 1267
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1130 GAGAAGCTTCAGCCCTGCGTGATGAATTAGATATGCTTCAAGAAGAAAACGATAATATTA 1189
Query 1268 TGGATAAGCTTCAGCGCGCTGAAGAAAGACGCGAAGCTGCAGAAGCAAGGGCTAAAGAGC 1327
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1190 TGGATAAACTTCAGCGCGCTGAAGAAAGACGCGAAGCTGCAGAAACAAGGGCTAAAGAGC 1249
Query 1328 TTGAGAAACAGGTTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGA 1387
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 TCGAGAAACAGATTGCTTCTCTAGGTGAAGGAGCAAATTTTGATGTCAAGCTCTTGAAGA 1309
Query 1388 GGAAAGAAGCAGCATTGCGTCAAAGAGAGGCAGCATTAAGGGCTGCTGAACAGAAAAGAG 1447
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 GGAAAGAAGCAGCACTGCGTCAAAGAGAGGCAGCATTAAGGGCTGCTGAACAGAAAAGAG 1369
Query 1448 ATGGAAGAAATAGGGAAACTAATGCCCTTAGCTCAGAATTTCAGAGTTTAAAAGATGAAG 1507
|||| | |||||| |||| |||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 1370 ATGGGATAAATAGAGAAAGTAATGCACTTAGTTCAGAATTTCAGAGTTTGAAAGATGAAG 1429
Query 1508 CAGAGAAATCCACGGAACAGCTCCAGGAGGTTGAAGCTGAAATAAAGTCTCTTCGGACAA 1567
|||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1430 CAGAGAAAGCCATGGAACAGCTCCAGGAGGTTGAAGCTGAAACAAAGTCTCTTCGGACAA 1489
Query 1568 TGATACATAGAACGATTTTGAGTCAAGAAGAAATGGAGGAAGTTGTTCTAAAGAGATGCT 1627
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1490 TGATACATAGAACGATTTTGACTCAAGAAGAAATGGAGGAAGTTGTTCTTAAGAGATGCT 1549
Query 1628 GGCTTGCTCGCTACTGGGAATTAGCTGTTCAACATGGAATATGTGAAGATATATCCACAT 1687
|||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1550 GGCTTGCTCGATACTGGGAACTAGCTGTTCAACATGGAATATGTGAAGATATAGCCACAT 1609
Query 1688 CAAGATATGAACATTGGTCAGCTTTAGCTCCTCTTCCCTCTGAAGTTGTCCTTTCCGCTG 1747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 CAAGATATGAACATTGGTCAGCTTTAGCTCCTCTTCCCTCTGAAGTTGTCCTTTCCGCTG 1669
Query 1748 CCCAAAAGTCTGAAGATTCCTGGCAGACAGGTGGTAGCGATCGCACTTGGAGCAAAGTCA 1807
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1670 CCCAAAAGTCTGAAGACTCCTGGCAGACAGGTGGTAGCGATCGCACTTGGAGCAAAGTCG 1729
Query 1808 TCAGTAATTTCAGTGATTTGAATGGAGAAGGGAACATTGAGAGTATGCTTGCTGTTGAAA 1867
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1730 TCAGTAATTTCAGTGATGTGAATGGAGAAGGAAACATTGAGAGTATGCTTGCTGTTGAAA 1789
Query 1868 CGGGATTACGAGAGATAGCATCCTTGAAGGTTGAGGATGCTGTAATGCTTGCACTTTCCC 1927
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1790 CGGGATTACGAGAGATAGCATCCTTGAAGGTTGAGGATGCTGTAATGCTTGCACTTGCCC 1849
Query 1928 GGTATAGACAGACAAATGT-GGCTCGACAAGCCGTCACTGATCCCAGGGTGCAAGGGGAA 1986
|||||||||| |||||||| ||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1850 GGTATAGACAAACAAATGTGGGC-CGACAAGCCATCACTGATCCCAGGGTGCAAGGGGAA 1908
Query 1987 CCTAAGTTCTCCGAAACATTTGAGTTGAGTCATGATGAGCAACAAGATATTCTCTTTAAA 2046
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1909 CCTAAGTTCTCTGAAACATTTGAGTTGAGTCATGATGAGCAACAAGATATTCTCTTTAAA 1968
Query 2047 GAGGCATGGCTGCTGTATTTCTGGAAAAGAGCTAAAATTCATGGCGTGGAAAGTGATATT 2106
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1969 GAGGCATGGCTGCTGTATTTCTGGAAAAGAGCTAAAATTCATGGCGTGGAAAGTGATATA 2028
Query 2107 GCGGAAGAGCGTCTTCAGTTCTGGATCAACCGACTCGGGCAACATTCATCTTCACATGAT 2166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2029 GCGGAAGAGCGTCTTCAGTTCTGGATCAACCGACTCGGGCAACATTCATCTTCACATGAT 2088
Query 2167 GCAATTGATGTGGAAAGAGGAATGAGGGAGCTAAGGAAGCTTGGAATAGAACAACAATTG 2226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2089 GCAATTGATGTGGAAAGAGGAATGAGGGAGCTAAGGAAGCTTGGAATAGAACAACAATTG 2148
Query 2227 TGGGAAACATCTCGTAAAGAACTCATCGACTCCTCTTTTCTTCCTTCTTATTCCGTTTCT 2286
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2149 TGGGAAACATCTCGTAAAGAACTCATAGACTCCTCTTTTCTTCCTTCTTATTCCGTTTCT 2208
Query 2287 GACTACAATGACGAGTGACCACCTCTACTCTCCTCTTTGCCTCCAATTTTCTTTATTCAC 2346
|||||||||||||| | |||||||||| | || |||||||||||||||| || ||||||
Sbjct 2209 GACTACAATGACGAATAACCACCTCTAATGTCTTCTTTGCCTCCAATTTCCTACATTCAC 2268
Query 2347 Gacacacgctcacataaac 2365
||||||||| ||||||||
Sbjct 2269 TACACACGCTAACATAAAC 2287
Score = 1044 bits (565), Expect = 0.0
Identities = 788/889 (89%), Gaps = 41/889 (5%)
Strand=Plus/Plus
Query 1 ATGGCGCGGAGACCAGGAACCTCCGCTTCTTCTTCACCCACGATGTCTCCGTCTCATCGG 60
|||||| |||||||||||| ||| ||||||||||||||||||||||||||||| ||| |
Sbjct 37 ATGGCGAGGAGACCAGGAAGCTCGGCTTCTTCTTCACCCACGATGTCTCCGTCGCATATG 96
Query 61 ATGAGCGGCGGCGGAGGAGGAATCTCCGGCAAAAGCACGCTCCGGAAACAAAACGCCGCC 120
|||| | | ||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 97 ATGAACAGTGGCGGAGGAGGAATCTCCGGCAAAAGCACTCTCCGGAAGCAAAACGCCGCC 156
Query 121 GAGCTACTCGCGAAGGTCATGGAGAAGCGCGAATATGATTATGATTACGACGATGAAGAT 180
||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 157 GAGCTGCTCGCGAAAGTCATGGAGAAGCGCGACTATGATTATGATTACGACGATGAAGAC 216
Query 181 GGAGGTGAAGATCTGTACCAGGTACATCTTCCTCCTCTTACTCAGTCTCGAAGACGAGAT 240
||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 217 GGAGGCGAAGATCTGTACCAGGTACATCTTCCGCCTCTTACTCAGTCTCGAGGACGAGAT 276
Query 241 GATAAGCGTATTGGTAAGGGCTCAGTCAACGAGAAAAAGGCTCCGGCGAAGAAACCGATC 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 277 GATAAGCGTATTGGTAAGGGTTCAGTCAACGAGAAAAAGGCTCCGGCGAAGAAACCGGTC 336
Query 301 ATACTTCCGGCGCCTAAATTTGATGATGAATCCGAAGATGATGAAACTAGAGCTAATTTT 360
||||| ||| ||||||||||||| |||||||||||||||||||||| ||||||| || ||
Sbjct 337 ATACTACCGCCGCCTAAATTTGACGATGAATCCGAAGATGATGAAATTAGAGCTGATGTT 396
Query 361 CGCCCA-AATCCAGTGATAATTCCTAAAAAGAATGCTAGGGAACCGAGAAAAGCTCCGGC 419
| ||| |||||||||||| |||||||||||||||||||||| ||||||| |||||||||
Sbjct 397 C-CCCGGAATCCAGTGATAGTTCCTAAAAAGAATGCTAGGGATCCGAGAAGAGCTCCGGC 455
Query 420 GACGAAACCGGTCGTTCTTCCGCCACCTAAATTTT-C--C----A--A--T----G---- 460
|||||| |||||||| |||||||| ||||||||| | | | | | |
Sbjct 456 GACGAAGCCGGTCGTACTTCCGCCGCCTAAATTTGACGACGGTGATGAAATTATAGCCGA 515
Query 461 TG--CGCCGGATTCCAGTGGAGATTTCTGGAAGGAATGCTAGGGGTTCG-AAAGAAGCTT 517
|| |||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 516 TGTGCGCCGGATTCCAGTGGAGATTTCTGGAAGGAATGCTAGGGGT-CGGAAAGAAGCTC 574
Query 518 CGACGGTGAAACAAGTCGTTAGTACGCCTAAATTTGACGATGAATACGACAGTGATGAAA 577
| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 575 CCACGGTGAAACCAGTCGTTAATACGCCTAAATTTGACGATGAATACGACAGTGATGAAA 634
Query 578 TTACAGAGGATGTTCCCCGGAATCCAGTGGAGATTAGGGGTCC-GGTCAGAGGAAAAGTA 636
|||||| |||||||||||||||||||||||||||||||| ||| ||||||||| ||||||
Sbjct 635 TTACAGCGGATGTTCCCCGGAATCCAGTGGAGATTAGGG-TCCCGGTCAGAGGGAAAGTA 693
Query 637 GCTCCGGCGGTCAAACCCGTAGTCGTTCTTCCGACTAAATTTGACGATGAATACGACAGT 696
||||||||||| |||||||| |||||||||||||| ||||||||||||||| || |||
Sbjct 694 GCTCCGGCGGTGAAACCCGT---CGTTCTTCCGACTAGATTTGACGATGAATATGATAGT 750
Query 697 GATGAAATTACAGAGGATGT-TCCCCGGAATCCAGTGGAGATTAGGGGTACCG-TCAGAG 754
||||||||||||| || || |||| |||||||||||| || || ||| ||| ||||||
Sbjct 751 GATGAAATTACAGCCGAGGTGTCCC-GGAATCCAGTGGGGAGTAAAGGT-CCGGTCAGAG 808
Query 755 GAAAAGTAGCTCCGGCGGTCAAACCCGTAGTCGTTCTTCCGACTAAATTTGACGATGAA- 813
| ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 809 GGAAAGTAGCTCCGGCGGTGAAACCCGT---CGTTCTTCCGACTAAATATGACGATGAAC 865
Query 814 TACGATAGTGATGAAATTACAGCCGATGTGTCC-CGGAATCCAGTGGAG 861
| ||| ||||| |||||| | ||||||||| || ||||| | |||||||
Sbjct 866 T-CGACAGTGACGAAATTGCGGCCGATGTG-CCTCGGAAGCAAGTGGAG 912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96901583280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5