BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25080.3
Length=1332
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492328 jgi|Araly1|492328|fgenesh2_kg.7__1761__AT4G25080.3 1676 0.0
> Ahg492328 jgi|Araly1|492328|fgenesh2_kg.7__1761__AT4G25080.3
Length=1127
Score = 1676 bits (907), Expect = 0.0
Identities = 1057/1129 (94%), Gaps = 11/1129 (1%)
Strand=Plus/Plus
Query 1 CTCTCACTGCAAGAGCGCGAAACAGAGTAAGGCTCACTTTGTTTTAGCTTTCTCCTCTAC 60
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1 CTCTCACTGCAAGAGCGCGAAACAGAGTAAGGCACACTTTGTTTT-GCTTTCTCCTCTAC 59
Query 61 TTCGATAATGCCGTTTGCTCCTTCCTTGTTGTCATCGTCTTCCTCAGTCTCTCAATTTCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTCGATAATGCCGTTTGCTCCTTCCTTGTTGTCATCGTCTTCCTCAGTCTCTCAATTTCT 119
Query 121 TCCCAGATTCCCCAACGCGACTAGATTCAATGTAACTCCACGGAGCAGAGCCGCCACCGT 180
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 120 TCCCAGATTCCCCAACGCGACTAGGTTCAATGTAACTCCCCGGAGCAGAGCCGCCACCGT 179
Query 181 CGTCGCGGCATCCGTCACCGACCTAGCCGGGGTCGACAGTACAACAATCGCCGTACTCGG 240
|||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||
Sbjct 180 CGTCGCGGCATCCGTCACCGACTTAGCCGGCGTAGACAGTACAACAATCGCCGTACTCGG 239
Query 241 TGGAGGATCCGTAGCAGCACTCGCGGCGATGGTTTCCTTAACGGATCCGGAGAGGAGGCG 300
||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 TGGCGGATCCGTTGCAGCACTCGCGGCGATGGTTTCCTTGACGGATCCGGAGAGGAGGCG 299
Query 301 GAAATTGCAGGCGGAGGAAGTTGGCGGAGGCGATAAGGAGGTTGTGAGGGAGTATTTCAA 360
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 300 GAAATTGCAGGCGGAGGAAGTTGGAGGAGGCGATAAGGAGGTGGTGAGGGAGTATTTCAA 359
Query 361 TAGCACGGGGTTCGAGAGGTGGAGGAAGATCTACGGTGAGACTGATGAAGTGAATCGAGT 420
|| || || |||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct 360 CAGTACCGGTTTCGAGAGGTGGAGGAAGATCTACGGCGATACTGATGAAGTGAATCGCGT 419
Query 421 ACAGAAGGATATTCGACTCGGTCATGCTAAGACGGTGGAGAACACGATGCTTATGCTGAC 480
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 ACAGAAGGATATTCGACTTGGTCATGCTAAGACGGTGGAGAACACGATGCTTATGCTCAC 479
Query 481 TGAAGATAGATCCTTGGCCGGTGTCACGGTTTGCGACGCCGGTTGTGGAACCGGTTTGCT 540
||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 480 GGAAGATAGATCTTTGGCCGGCGTCACGGTCTGCGACGCCGGTTGCGGAACCGGTTTGCT 539
Query 541 CTCGATTCCACTTGCTAAGGAAGGAGCAATCGTCTCTGCTTCCGATATTTCTGCTGCTAT 600
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 540 CTCGATTCCACTTGCTAAGGAAGGAGCAATAGTCTCTGCTTCCGATATCTCTGCTGCTAT 599
Query 601 GGTTGCTGAAGCTGAGATGAAGGCAAAGGCACAACTACCATCAGAGAATTTACCAAAATT 660
|||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 600 GGTTGCCGAAGCTGAGATGAAGGCAAAGGCACAACTGCCACCAGAGAATTTACCAAAATT 659
Query 661 TGAGGTGAATGATTTGGAGAGCCTAACTGGGAAGTATGATACCGTTGTATGTCTCGACGT 720
||||||||||||||| |||||||||| ||||||||| || || || ||||| ||||||||
Sbjct 660 TGAGGTGAATGATTTAGAGAGCCTAAGTGGGAAGTACGACACAGTGGTATGCCTCGACGT 719
Query 721 GTTGATACATTACCCGCAGAACAAAGCAGACGGAATGATCGCACATCTTGCTTCTTTAGC 780
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 720 GCTGATACATTACCCGCAGAACAAAGCAGACGGAATGATCGCACATCTCGCTTCTTTAGC 779
Query 781 AGAGAAGAGAGTGATTCTGAGTTTTGCTCCAAAGACTTTTTACTATGATATCTTAAAGAG 840
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 780 AGAGAAGAGAGTGATTCTGAGTTTTGCTCCAAAGACTTTTTACTACGATATCTTAAAGAG 839
Query 841 AATTGGAGAGCTTTTCCCAGGGCCATCAAAAGCTACAAGGGCGTATCTACACTCGGAGGC 900
|||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||
Sbjct 840 AATTGGAGAGCTTTTCCCAGGGCCATCAAAGGCTACACGGGCTTATCTACACTCGGAGGC 899
Query 901 GGATGTGGAAAGAGCGTTGGGTAAAGTCGGCTGGAAAATCAGCAAGAGAGGACTCACTAC 960
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 900 AGATGTGGAAAGAGCGTTGCGTAAGGTCGGCTGGAAAATCAGCAAGAGAGGACTCACTAC 959
Query 961 CACACAGTTCTACTTCTCTAGGCTCATCGAAGCTGTTCCAATGTAGACCAATTTGAAAAC 1020
||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| |||||
Sbjct 960 CACACAGTTTTACTTCTCTAGGCTCATTGAAGCTGTTCCAATGTAGACCCATTTTAAAAC 1019
Query 1021 TAGAAATCAAATTTG-ACGGTTAGCTTTCCGTTTGGAACTTTTGCAGTAGATCTCT---- 1075
|||| | || | | | |||||||||||| ||||| |||||||||||||||||||
Sbjct 1020 TAGATA-CATGTGAGGATGGTTAGCTTTCCTTTTGGGACTTTTGCAGTAGATCTCTCTCT 1078
Query 1076 GTATAGCATATTC---CGA-GAAGGATTTTCGTGGAAGACATGCAGATT 1120
|||||||||||| ||| ||||||| ||||| |||||||||||||||
Sbjct 1079 GTATAGCATATTAATTCGAAGAAGGATATTCGTTGAAGACATGCAGATT 1127
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49826652519
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5