BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25100.1
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492324 jgi|Araly1|492324|fgenesh2_kg.7__1757__AT4G25100.2 1103 0.0
> Ahg492324 jgi|Araly1|492324|fgenesh2_kg.7__1757__AT4G25100.2
Length=873
Score = 1103 bits (597), Expect = 0.0
Identities = 665/696 (96%), Gaps = 11/696 (2%)
Strand=Plus/Plus
Query 178 AGCTTCA-ATTACAAAGAATGGCTGCTTCAAGTGCTGTCACCGCAAACTACGTCCTCAAG 236
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 91 AGCTTCAGTTTA-AAAGAATGGCTGCTTCAAGTGCTGTCACCGCAAACTACGTCCTCAAG 149
Query 237 CCACCTCCATTCGCACTGGATGCTTTGGAGCCGCATATGAGCAAACAAACTCTGGAGTTT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 150 CCACCTCCATTCGCACTGGATGCTTTGGAGCCGCATATGAGCAAACAAACTCTGGAGTTT 209
Query 297 CACTGGGGAAAACATCACAGAGCTTACGTGGACAACCTCAAGAAACAGGTTCTTGGAACC 356
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 CACTGGGGAAAGCATCACAGAGCTTACGTGGACAACCTCAAGAAACAGGTTCTTGGAACC 269
Query 357 GAGCTTGAAGGCAAGCCCTTAGAGCACATTATCCACAGCACTTACAACAATGGTGATCTC 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 GAGCTTGAAGGCAAGCCCTTAGAGCACATTATCCACAGCACTTACAACAATGGTGATCTC 329
Query 417 CTCCCTGCTTTCAACAACGCTGCTCAGGCGTGGAACCACGAGTTCTTCTGGGAGTCAATG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 CTCCCTGCTTTCAACAACGCTGCTCAGGCGTGGAACCACGAGTTCTTCTGGGAGTCAATG 389
Query 477 AAACCAGGTGGTGGAGGAAAACCATCAGGAGAGCTTCTTGCTTTGCTTGAAAGAGATTTC 536
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 AAACCCGGCGGTGGAGGAAAACCATCAGGAGAGCTTCTTGCTTTGCTTGAAAGAGATTTC 449
Query 537 ACTTCTTATGAGAAGTTCTATGAAGAGTTCAATGCTGCTGCAGCCACTCAGTTTGGAGCT 596
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 450 ACTTCTTATGAGAAGTTCTATGAAGAGTTCAACGCCGCTGCAGCCACTCAGTTTGGAGCT 509
Query 597 GGCTGGGCCTGGCTTGCTTATTCAAATGAAAAACTCAAAGTAGTGAAAACTCCCAATGCT 656
|||||||||||||| |||||| ||||||| ||||||||||||||||||||||| ||||||
Sbjct 510 GGCTGGGCCTGGCTCGCTTATGCAAATGACAAACTCAAAGTAGTGAAAACTCCAAATGCT 569
Query 657 GTGAATCCCCTTGTGCTCGGCTCTTTCCCATTGCTTACCATTGATGTCTGGGAGCATGCT 716
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 570 GTGAATCCCCTTGTGCTCGGCTCTTTCCCCTTGCTTACCATTGATGTCTGGGAGCATGCT 629
Query 717 TACTACCTTGACTTCCAGAACCGAAGACCAGATTACATAAAGACATTCATGACCAATCTT 776
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 630 TACTACCTTGACTTCCAGAACCGGAGACCGGATTACATAAAGACATTCATGACCAATCTT 689
Query 777 GTGTCTTGGGAAGCTGTAAGTGCCAGACTTGAGGCCGCCAAGGCTGCTTCTGC-T-T--- 831
||||||||||||||||| ||||||||||||||| |||| |||||||||||| | | |
Sbjct 690 GTGTCTTGGGAAGCTGTGAGTGCCAGACTTGAGACCGCAAAGGCTGCTTCTTCCTCTTCT 749
Query 832 ----AAGCAAATTTCTGAACAATTTGACTTCAGTGA 863
||||| | |||| |||||||||||||||||||
Sbjct 750 TCTTAAGCAGAGTTCTCAACAATTTGACTTCAGTGA 785
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44108214969
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5