BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G25110.1 Length=1786 Score E Sequences producing significant alignments: (Bits) Value Ahg492323 jgi|Araly1|492323|fgenesh2_kg.7__1756__AT4G25110.1 2069 0.0 > Ahg492323 jgi|Araly1|492323|fgenesh2_kg.7__1756__AT4G25110.1 Length=1696 Score = 2069 bits (1120), Expect = 0.0 Identities = 1365/1477 (92%), Gaps = 41/1477 (3%) Strand=Plus/Plus Query 304 AAAATAATGTTGTTGCTGGTGGACTGCTCCAGCTGTCGTACGCCGCTTCACCTTCCTCCC 363 |||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 244 AAAAGAATGCTGTTGCTGGTGGACTGCTCCAGCTGTCGTACGCCGCTTCACCTCCCTCCC 303 Query 364 GGAGCCACCCGAATCCGCTGCGCCATTTGTCACGCCTTCACTCTCATCGCCCCCGAGCCC 423 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 304 GGAGCCACCCGAATCCGCTGCGCCATTTGTCACGCCTTCACTCTCATCGCTCCCGATCCC 363 Query 424 CGTCTCCAATCTCACGCGTCGGCGAGCCCTTTTCCTTTCCCCAACTCATCT-CCG----- 477 ||||||||||| ||||| ||||| ||||||||||||||||| ||||||||| ||| Sbjct 364 CGTCTCCAATCCCACGCTTCGGCCAGCCCTTTTCCTTTCCCAAACTCATCTCCCGTAACT 423 Query 478 ---GCTCCATCCACTTTCATCTACCCGCCGCCAACACCTTCTCCGTACACTCACGCGCCG 534 || |||||| ||| || ||||||||||||| |||| ||||||| ||||||||||||| Sbjct 424 CCAGCACCATCCGCTTCCACCTACCCGCCGCCATCACCGTCTCCGTTCACTCACGCGCCG 483 Query 535 CATGCACCGTCTCCATTCAACCACGCGCCTCCAGATTC-TTACCCGTTCACTCACGCGCC 593 | ||||||||||||||||||||||||||||||||| | ||| |||||||||| |||||| Sbjct 484 CCTGCACCGTCTCCATTCAACCACGCGCCTCCAGA-ACATTATCCGTTCACTCCCGCGCC 542 Query 594 -TCCAGCATCGTCTCCATTCAACCACGCGCCGCCGGGTCCTCCACCGCCGGTACATGGAC 652 | ||||| |||||||||| |||||||||||||||||||||||||| || ||||| |||| Sbjct 543 GT-CAGCACCGTCTCCATTTAACCACGCGCCGCCGGGTCCTCCACCACCCGTACACGGAC 601 Query 653 AGAAGCGAGCGGTGATAGTCGGGGTTTCTTACAAGAACACAAAGGACGAACTCAAAGGAT 712 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 602 AGAAGCGAGCGGTGATCGTGGGGGTTTCTTACAAGAACACAAAGGACGAACTCAAAGGAT 661 Query 713 GTATCAATGACGCAAACTGCATGAAGTTCATGTTGATGAAGCGTTTCCAATTCCCTGAAT 772 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 662 GTATCAATGACGCAAAGTGCATGAAGTTCATGTTGATGAAGCGTTTCCAATTCCCTGAAT 721 Query 773 CTTGCATTCTTATGCTCACCGAAGAAGAAGCGGACCCAATGAGATGGCCAACGAAGAACA 832 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 722 CTTGCATTCTTATGCTCACCGAAGAAGAAACGGACCCAATGAGATGGCCAACGAAGAACA 781 Query 833 ACATAACAATGGCGATGCATTGGCTTGTTCTTAGCTGCAAACCGGGAGATTCCCTCGTCT 892 ||||||| ||||||||||||||||| ||| | |||||||||||||||||||||||||||| Sbjct 782 ACATAACGATGGCGATGCATTGGCTAGTTGTAAGCTGCAAACCGGGAGATTCCCTCGTCT 841 Query 893 TTCACTTCTCCGGTCACGGCAACAACCAGATGGACGACAACGGCGACGAGGTTGACGGCT 952 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 842 TTCACTTCTCCGGTCACGGCAACAACCAGATGGACTACAACGGCGACGAGGTTGACGGCT 901 Query 953 TCGATGAGACTCTTCTCCCGGTGGACCACAGGACTTCAGGTGTCATCGTGGACGATGAGA 1012 |||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 902 TCGACGAGACTCTTCTCCCGGTGGACTACATGACTTCAGGTGTCATCGTGGACGATGAGA 961 Query 1013 TCAATGCTACAATCGTACGGCCGCTCCCTTATGGAGTTAAGCTCCATGCCATCGTCGACG 1072 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 962 TCAATGCTACAATCGTACGGCCGCTCCCTTATGGAGTCAAGCTCCATGCCATCGTCGACG 1021 Query 1073 CTTGTCATAGTGGTACCGTCATGGACTTACCTTATCTTTGTAGAATGGACAGGCTCGGAA 1132 |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 1022 CTTGTCATAGTGGTACCGTCATGGACTTGCCTTATCTTTGTAGAATGGATAGGCTCGGAA 1081 Query 1133 ACTATGAATGGGAAGACCATCGGCCTAAAACAGGAATGTGGAAAGGTACGAGTGGCGGTG 1192 ||||||||||||| |||||||||||| | ||||||||||||||||||| |||||||||| Sbjct 1082 ACTATGAATGGGAGGACCATCGGCCTCCATCAGGAATGTGGAAAGGTACAAGTGGCGGTG 1141 Query 1193 AAGTCTTCTCCTTCACAGGCTGCGATGATGACCAGACCTCGGCTGACACTCCGCAATTGT 1252 |||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1142 AAGTCTTCTCTTTCACGGGCTGCGATGATGACCAGACCTCAGCTGACACTCCGCAATTGT 1201 Query 1253 CAGGGAGCGCATGGACGGGGGCAATGACTTATGCATTCATTCAGGCCATAGAACGTGGCC 1312 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1202 CAGGGAGTGCATGGACGGGGGCAATGACTTATGCATTCATTCAGGCCATAGAACGCGGCC 1261 Query 1313 ACGGGATGACTTATGGGAGCTTGCTGAATGCAATGAGATCAACGGTTCATGAGATCTTCG 1372 |||||| ||||||||||||||| |||||||||||||||||||||||||| ||||| |||| Sbjct 1262 ACGGGACGACTTATGGGAGCTTACTGAATGCAATGAGATCAACGGTTCACGAGATTTTCG 1321 Query 1373 ACAAAAACAAAGGTAGAGAGCTTGTGGAAGTGGGAGGTGCTGATTTTCTCTCTACTCTTC 1432 ||||| ||||||||||||||||||||||||||| ||| |||||| ||||| ||||||||| Sbjct 1322 ACAAAGACAAAGGTAGAGAGCTTGTGGAAGTGGAAGGCGCTGATCTTCTCACTACTCTTC 1381 Query 1433 TTGGTTTGCTCATCTTAGGCGCTTCTCCTCCTGATGAGGAAGAGGAAGTAAACCAAGCCC 1492 |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| Sbjct 1382 TTGGTTTGCTCATCTTAGGCGCTTCTCCTCTTGATGAGGAAGAGGAGGTAAACCAAGCCC 1441 Query 1493 CTCAAAAAACTCAGGAACCACAGTTGAGCGCTAACGAGGCATTTGCTGTATATGAGAAGC 1552 ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 1442 CTCAAAAAACTCAGGAACCACAGTTGAGCGCTAACGACGCATTTGATGTATATGAGAAGC 1501 Query 1553 CCTTCTCTTTATAATATCACCTTAAGA--AG-ACAAAAGAATGAGTATGAAATTTCGGAG 1609 |||| ||||| |||||||||||||||| || |||||||||||||||||||| | Sbjct 1502 CCTTTTCTTTGTAATATCACCTTAAGAGGAGGACAAAAGAATGAGTATGAAA------A- 1554 Query 1610 ACCAACaaaaaaaaCTTTATTGAGCTTGGAGTGAAGCTATATATATGGGGCAAGATCATA 1669 | ||| ||||||||||||||||||||| |||||| |||||| ||||||| Sbjct 1555 A--AAC---------TTTATTGAGCTTGGAGTGAAG--ATATAT--GGGGCATGATCATA 1599 Query 1670 ATATGTTTATATCGGCCTTTTCATTAACTGAAAATAATAGTTTTGAGAAATAT-ATCAAA 1728 ||||||||||||||||||||||||||| ||||||||| |||| |||||||| | |||||| Sbjct 1600 ATATGTTTATATCGGCCTTTTCATTAAGTGAAAATAAAAGTTATGAGAAATTTTATCAAA 1659 Query 1729 TGGTAAACAGACATCATCTTTGAAAAATA-CCATCAA 1764 ||||||||||||||||||||| |||||| ||||||| Sbjct 1660 TGGTAAACAGACATCATCTTT-AAAAATTGCCATCAA 1695 Score = 237 bits (128), Expect = 2e-61 Identities = 218/257 (85%), Gaps = 23/257 (9%) Strand=Plus/Plus Query 4 GAAGGAACAATTATAATTCGCAACTTGCTAATTTAACTTG-G--G------TTGTATATA 54 ||||||| ||||||||||| |||||||||||||||| ||| | | ||||||||| Sbjct 1 GAAGGAAGAATTATAATTCTCAACTTGCTAATTTAATTTGTGTCGTATACATTGTATATA 60 Query 55 TGCAAGTTGAGACGACTTCATTTGATCATCAAACAAAAGTCTTGACGAATACATTAGCGG 114 ||| |||||||||||||| ||||||||||||| |||||||||||||||||||| ||| Sbjct 61 TGCCAGTTGAGACGACTT-GTTTGATCATCAAA-AAAAGTCTTGACGAATACATAAGCCT 118 Query 115 ATAAGCTTAAAGTCGTC-GA--AAGAATTTTCTTCCTT-GCCTTATTGGCATCTTCTTCT 170 | ||| | ||| || | || |||||||| ||| |||||||||||||||||||| Sbjct 119 A-AAG--T--CGTC-TCTTACTCAGCATTTTCTT-CTTCACCTTATTGGCATCTTCTTCT 171 Query 171 AAAGTTCCAATGCTTTGATCATTGATGATTTTCCCAGCATCAGAAACTAAAGGCTATAAT 230 ||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||| Sbjct 172 AAAGTTCCAATGCTT-GATCATTGATGATTTTCCCAGCATCAGAACCGAAAGGCTATAAT 230 Query 231 CTGCAACTTTCAAGAAA 247 ||||||||||||| ||| Sbjct 231 CTGCAACTTTCAAAAAA 247 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67038831200 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5