BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G25130.1 Length=1054 Score E Sequences producing significant alignments: (Bits) Value Ahg492320 jgi|Araly1|492320|fgenesh2_kg.7__1753__AT4G25130.1 1435 0.0 > Ahg492320 jgi|Araly1|492320|fgenesh2_kg.7__1753__AT4G25130.1 Length=1016 Score = 1435 bits (777), Expect = 0.0 Identities = 946/1026 (92%), Gaps = 18/1026 (2%) Strand=Plus/Plus Query 32 AAAGTTCCAAATTTCACCACGTCACTGCTTTGATAATGCAGGTCctcgtcgtctctcctc 91 |||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 1 AAAGTTCCTAATTTCACCACGTCACTGCTTTGATAATGCAGGTCATCGTCGCCTCTCCTC 60 Query 92 cgctcatcgccgccgcatctctctctaaacctctcaattctctctctaaagccgcactct 151 |||||||| ||||||| ||||||||||||||| || ||||||||||||| |||||||||| Sbjct 61 CGCTCATCTCCGCCGCTTCTCTCTCTAAACCTTTCCATTCTCTCTCTAAGGCCGCACTCT 120 Query 152 ctttctcCAGAGCCAAACCCATTTGTCCTTTCCCTCAAACCTCTCGACGACCAATCTCCG 211 ||||||| ||||||||||||||||| |||||||| |||| | ||| |||||| ||||||| Sbjct 121 CTTTCTCTAGAGCCAAACCCATTTGCCCTTTCCCCCAAA-C-CTC-ACGACCCATCTCCG 177 Query 212 TATACAAATCCCCAATGAACAACCTTTTCAACAGACTCGGATTCGGGTCTCGTCCTCAAG 271 | ||||||||||| ||||||||||| |||||||| ||||| |||||||||||||| |||| Sbjct 178 TCTACAAATCCCCGATGAACAACCTCTTCAACAGGCTCGGTTTCGGGTCTCGTCCCCAAG 237 Query 272 CCCAAGCT-GACCCATCTTCCGCCGCAATCGCCCAAGGACCCGACGATGATGTTCCGTCT 330 | |||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 238 CTCAAG-TCGACCCATCTTCCGCCGCAATCGCCCAAGGACCCGACGACGATGTTCCGTCG 296 Query 331 TCAGGTCAGCAATTCGCGCAATTTGGCGCCGGTTGTTTCTGGGGAGTGGAGCTAGCTTAC 390 |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 297 CCAGGTCAGCAATTCGCGCAATTCGGCGCCGGTTGCTTCTGGGGAGTGGAGCTAGCTTAC 356 Query 391 CAGAGAGTTCCTGGTGTGACCAAGACCGAGGTTGGGTATAGCCATGGCATCGTGCACAAT 450 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 357 CAGAGAGTTCCTGGTGTGACCAAGACCGAGGTTGGGTATAGCCATGGCCTCATGCACAAT 416 Query 451 CCGAGTTACGAGGATGTCTGTACTGGCACTACGGGACATAACGAGGTTGTTAGAGTTCAG 510 ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 417 CCGAGTTACGAAGATGTCTGTACTGGCACGACGGGACACAACGAGGTTGTTAGAGTTCAG 476 Query 511 TATGATCCCAAAGAGTGTAGCTTTGAGAGCTTGCTTGATGTTTTCTGGAATCGTCATGAT 570 || ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 477 TACGATCCTAAAGAGTGTAGCTTTGAGAGCTTGCTCGATGTTTTCTGGAATCGCCATGAT 536 Query 571 CCAACCACCTTGAATCGTCAGGGTGGG-GATGTGGGAACGCAGTATCGATCAGGTATATA 629 ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||| ||||| Sbjct 537 CCAACCACCTTGAATCGTCAGGG-GGGCGATGTGGGAACTCAGTATCGATCAGGCATATA 595 Query 630 CTACTACACAGACGAGCAAGAGCGCATAGCTCGTGAAGCTGTTGAGAAACAGCAGAAGAT 689 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 596 CTACTACACAGACGAGCAAGAGCGCATAGCTCGTGAAGCCGTTGAGAAACAGCAGAAGAT 655 Query 690 ATTGAACAAGAGGATTGTCACAGAGATACTTCCCGCTACGAAATTCTACAGAGCAGAAAA 749 ||||||||||| |||||| ||||||||||||||||| || |||||||||||||||||||| Sbjct 656 ATTGAACAAGAAGATTGTGACAGAGATACTTCCCGCGACAAAATTCTACAGAGCAGAAAA 715 Query 750 TTACCACCAGCAATACCTGGCAAAAGGGGGTCGCATGGGTTTAAGACAATCAGCTGAGAA 809 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 716 TTACCACCAGCAATACCTGGCAAAAGGCGGTCGCATGGGTTTAAGACAATCAGCTGAGAA 775 Query 810 AGGTTGCAAGGATCCAATCCGATGCTATGGCTAAGAAACTAAGTCAGTCTTCCCTCAAGC 869 |||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||| Sbjct 776 AGGTTGCAAGGATCCAATCCGATGTTACGGCTAAGAAAATAAGTCAGTCTTCCCTCAAGC 835 Query 870 ACATAAAAAGAAGTGAGTTGTCTCATGAAAAATACAATAATCTGTAGATCACATTTGTTT 929 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 836 ACATAAAAAGAAGTGAGTTGTCTCATGAAAAATACAATAATCTGTAGATCACATTTGTGT 895 Query 930 CTTGTCTTTGTTATGCAACCAATGGTTATGATGCATCCTATGCTTA-T-ATGAATCAAG- 986 || |||||||||||| ||||| |||| ||||||| || ||||||| | || ||| | Sbjct 896 CTGGTCTTTGTTATGTAACCATTGGTAATGATGCGTCATATGCTTGCTTATAAATTT-GT 954 Query 987 GCTTTGTCCAAATCAATT-TCAA-TTTGATACTACAGTACTGGTA-ATACAATTTGGGAA 1043 | ||| | ||| ||| | || |||| ||||||||||||||| |||||||||||||| Sbjct 955 G-TTT--CAAAAACAACCAT-AAGTTTGGTACTACAGTACTGGTCCATACAATTTGGGAA 1010 Query 1044 GTTCTC 1049 || ||| Sbjct 1011 GTCCTC 1016 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39228481593 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5