BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25170.2
Length=1436
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945578 jgi|Araly1|945578|scaffold_701807.1 1026 0.0
> Ahg945578 jgi|Araly1|945578|scaffold_701807.1
Length=1078
Score = 1026 bits (555), Expect = 0.0
Identities = 620/652 (95%), Gaps = 2/652 (0%)
Strand=Plus/Plus
Query 621 GGTTTTCGATGCTAGTTCATATTCCCAGCTGGTTAGAGACAAATACGAGTGCTATCCGGA 680
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 428 GGTTTTCGATGCTAGTTCATATTCTCAGCTGGTAAGAGACAAATACGAGTGCTATCCGGA 487
Query 681 AAATGGTGGTGGAAACCAGAGCCCTATAGCCACAGGGATGGTTCATCAAGTTCCTTCATT 740
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 488 AAGTGGTGGTGGAAACCAGAGCCCTATAGCCACAGGGATGGTTCATCAAGTTCCTTCGTT 547
Query 741 CGGGTCGGATTCGGACTGGATGGAGCCATCAATGCATTTATGCCATTCAAGAACGTTAAA 800
|||||||||||||||||||||||||| |||||||| |||||||||||||||| ||| |
Sbjct 548 TGGGTCGGATTCGGACTGGATGGAGCCTTCAATGCAACTATGCCATTCAAGAACCTTACA 607
Query 801 GCCTCATGCTTATGATCAGGTTTACAATGCTTTTGACCTACTACGAACCGAACCATCTGT 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 GCCTCATGCTTATGATCAGGTTTACAATGCTTTTGACCTACTACGAACCGAACCATCTGT 667
Query 861 CCAGAAAATGGTAGTATCATTGTCGTCTGACAAAGCAGTTTGGGAGGCGGTGATGAACAA 920
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 668 CCAGAAAATGGTAGTATCATTGTCGTCTGACAAAGCAGTCTGGGAGGCGGTGATGAACAA 727
Query 921 CGATGTGGTGCGAGAGATTAGGGACTTGTACAACAATGGCATAAGTCAAGATGAGGAAAA 980
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 728 CAATGTGGTGCGAGAGATTAGGGACTTGTACAACAATGGCATAAGTCAAGATGAGGAGAG 787
Query 981 TTCAGAAGACAC-CCCTAGGGAGAATAACGCAGCAACGGATTTCATAAAGTGGGTATTTG 1039
|||||||||||| ||| ||||||| |||||||||| |||||||||||||||||||||||
Sbjct 788 TTCAGAAGACACTCCCG-GGGAGAACAACGCAGCAATGGATTTCATAAAGTGGGTATTTG 846
Query 1040 ACAACACAATGGTTAAGGCCACGGAAGTGTTTGTGAAAATAACAAAGGTCGTGACCGAGC 1099
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 847 ACAACACAATGGTTAAGGCCACAGAAGTGTTTGTGAAAATAACAAAGGTCGTGACCGAGC 906
Query 1100 TCTTCAATTGTTACAATGGTGATGGTGTTAACAACAAGGGGAAAGATGCCAAATTCAACA 1159
||||||| ||||||||||| ||| ||||| ||||||||||||||||||||||||||||||
Sbjct 907 TCTTCAACTGTTACAATGGCGATAGTGTTTACAACAAGGGGAAAGATGCCAAATTCAACA 966
Query 1160 ATTGGCTCGAGGAAAAGCTGACCACTTCGGTCCTGCTATCCATCATCGTTATGCTGGTCG 1219
||||||||||||||| |||||| |||||||||||||| |||||| | ||| |||||||||
Sbjct 967 ATTGGCTCGAGGAAAGGCTGACGACTTCGGTCCTGCTCTCCATCGTGGTTCTGCTGGTCG 1026
Query 1220 TGATGGTATCCCGAGCCTGCAACTAGTCTTGATCGTTTCAAATTAGCCGACA 1271
||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1027 TGATGGTGTCCCGAGCCTGCAACAAGTCTTGATCGTTTCAAATTAGCCGACA 1078
Score = 593 bits (321), Expect = 9e-169
Identities = 406/442 (92%), Gaps = 25/442 (6%)
Strand=Plus/Plus
Query 144 ACAATTTGATAGTGATCTCTCTATGTTTGGTGGAGGAAGAGGGCCTATGGGTGGCGGCGG 203
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ACAATTTGATAGTGA--TCTCTATGTTTGGTGGTGGAAGAGGGCCTATGGGTGGCGGCGG 58
Query 204 AGGTATGTTACGCGCCGCCGGTCGTGCGATGACGAGGACCGGTGTAGCCAACGGTGGTAT 263
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 59 AGGTATGTTACGCGCCGCCGGTCGTGCGATGACGAGGACCGGCGTAGCCAACGGTGGTAT 118
Query 264 TCAAGATCCCTTTGCTTCTTCATCATCATCGTCCACGTCGTCTCCGGCTGGAAACGCCTC 323
||||||||||||||||||||||||||| |||||||||||| | | || | |||||
Sbjct 119 TCAAGATCCCTTTGCTTCTTCATCATCCTCGTCCACGTCG--T-C-GC-CG----GCCTC 169
Query 324 TGTTTCGCATGTCCAGAAACAGAGA---------TCTTCTTCTTCTGGGTCGAATAATCT 374
||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 170 TGTTTCGCATGTCCAGAAACAGAGATCTTCTTCTTCTTCTTCTTCTGGGTCGAATAATCT 229
Query 375 GACGTA-TTCCGCGGCTTCTGGGTTGTTGTTGAATCTTCCGGTGGCTGCAACCTCCGGAT 433
||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 230 TACG-ATTTCCGCGGCTTCAGGGTTGTTGTTGAATCTTCCGGTGGCTGCAACCTCCGGAT 288
Query 434 GGAGCGGCGGCGGTCCTTTTTCCTTTGTTAATTCTGGAGGTTATGATGATTTTGAGTGGG 493
||| ||||||| | |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 289 GGAAAGGCGGCG--C-TTTTTCCTTTGTTAATTCCGGAGGTTATGATGATTTTGAGTGGG 345
Query 494 TTTCTGAGGAAGAAGATGATTCTCTGTTTGGCTCTGTTCCTTCTGTTGATGAAGTCCAAG 553
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 346 TTTCTGAGGAAGAAGACGATTCTCTGTTTGGCTCTGTTCCTTCTGTTGATGAAGTCCATG 405
Query 554 ATGCTGTTTCTGCTCTCCAGCA 575
||||||||||||||||||||||
Sbjct 406 ATGCTGTTTCTGCTCTCCAGCA 427
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53707245450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5