BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25290.1
Length=2323
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492304 jgi|Araly1|492304|fgenesh2_kg.7__1737__AT4G25290.1 1256 0.0
> Ahg492304 jgi|Araly1|492304|fgenesh2_kg.7__1737__AT4G25290.1
Length=1674
Score = 1256 bits (680), Expect = 0.0
Identities = 779/827 (94%), Gaps = 6/827 (1%)
Strand=Plus/Plus
Query 61 AACCGATGCAAATGTTGTTTGTCTTCGGCAACGAATGAAGGTTCCACGGCGGTTGTGTGG 120
|||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 49 AACCAATGCAGATGTTGTTCGTCTTCGGCAACGAATGAAGGTTCCACGGCGGTTGTGTGG 108
Query 121 TTTAAACATGACCTACGTGTTGATGATCATCCTGGCCTCCTCGCTGCGTCTAAGCACAGA 180
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 109 TTTAAACATGACCTTCGTGTTGATGATCATCCTGGCCTCCTCGCTGCGTCCAAGCACAGT 168
Query 181 GCCGTCATACCTCTCTACGTCCTCGATCGTCGCATTCTATCGAGATACACAACGGACACT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 GCCGTCATACCTCTCTACGTCCTCGATCGTCGCATTCTATCGAGATACACAACGGACACC 228
Query 241 TTAGAGCTAGCTATTATAGCATTGGAAGATTTGAGAAAAACCTTGAAGAAGCAAGGATCA 300
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 229 TTAGAGCTAGCTATTATAGCCTTGGAAGACTTGAGAAAAACCTTGAAGAAGCAAGGATCA 288
Query 301 AATCTTATGCTCAGATATGGGAATGCAGAGAATGTCATTGAAGATCTTGTCAAAGAGGTG 360
||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||||||||
Sbjct 289 AATCTGATGCTCAGATACGGGAATGCAGAAAATGTCATTGCAGATCTTGTCAAAGAGGTA 348
Query 361 CGAGCTCCTTTTGTCTTTGTGGAAGAAGAGGTAGAATACCATCTGTGTGAGGTTTTAGAC 420
||||||| || ||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 349 CGAGCTCATTCTGTCTTTGTGGAAGAAGAGGTAGAATACCATCTGTGTGATGTTTTGGAC 408
Query 421 GCTGTAAAGAATAAATTGGAAGG-TGTTTCTTTATCTGGAGAATCA-CCGAGGATTGTTG 478
| ||| ||||| ||||||||||| | ||||||||||||||||| || || |||||||||
Sbjct 409 GGTGTTAAGAAAAAATTGGAAGGCT-TTTCTTTATCTGGAGAA-CAACCAAGGATTGTTT 466
Query 479 CTTGGCGTACTCCTTTTTACGAGAGCCAAAATTTGACAGATCTACCACAATCTTGGGAGG 538
|||||| | ||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 467 TTTGGCGGAGTCCTTTTTACGAGAGCCAAAATTTGACGGATCTACCACAATCTTGGGAAG 526
Query 539 AGTTTAAGAAACTGAAGCTGCCTCTCACTTTGCCAGTTCCTGCAGCAAAATTTTCATCTC 598
||||||||||||| ||||||||| || ||||||||||||||||||||| ||||||||| |
Sbjct 527 AGTTTAAGAAACTAAAGCTGCCTATCTCTTTGCCAGTTCCTGCAGCAAGATTTTCATCCC 586
Query 599 CAGGAAGTGAATTGCAGTGGGGTTCTGTGCCAACGCTCGATGACCTGAAGGACTATTTGA 658
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 CAGGAAGTGAATTGCAATGGGGTTCTGTGCCAACGCTCGATGACCTGAAGGACTATTTGA 646
Query 659 AGGAAAGCTTATGGGA-AATAGAAAATAGTTGGAGGGAAATGGCACAGGCATCTGCTGAA 717
||||||||||||| || || ||||||||| ||||||||||||||||||||||||||||||
Sbjct 647 AGGAAAGCTTATGCGAGAA-AGAAAATAGCTGGAGGGAAATGGCACAGGCATCTGCTGAA 705
Query 718 AGAGTATTAATGGAAAGGCTTGGTAACTTGAAGGAAAGCAGTATGGAGCCAATTGTTGAT 777
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 706 AGAGTATTAATGGAAAGGCTTGGTAATTTGAAGGAAAGCAGTATGGAGCCAATTGTTGAT 765
Query 778 GGAAGTTTAGGGAAGAAGGTTGATAACTCTGTTTTTGTCACAAGTAAAAGAGATACTGTT 837
||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||
Sbjct 766 GGAAGTTTAGGGAAGAAGGTTGACAATTCTGCTTTTGTCACAAGTAAAAGAGATACTGTT 825
Query 838 GGAGGTGGAAATGAGGTTGTACTGAATGCTCTAGCAGGATACTTGAG 884
|||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 826 GGAGGTGGAAATGAGGCTGTACTCAATGCTCTAGCAGGATACTTGAG 872
Score = 752 bits (407), Expect = 0.0
Identities = 449/470 (96%), Gaps = 0/470 (0%)
Strand=Plus/Plus
Query 1223 AGTACACAGTGGTTGGTAATGAAGGGCCTGCCGTTCTTCTTGTGCATGGCTTTGGTGCTT 1282
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 992 AGTACACAGTGGTTGGTAATGAAGGCCCTGCCGTTCTTCTTGTGCATGGCTTTGGTGCTT 1051
Query 1283 TTCTAGAGCATTACCGCGATAATGTAGACAACATCGTAAATAGCAAAAATCGAGTATGGA 1342
|||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||
Sbjct 1052 TTCTAGAGCATTACCGTGACAATGTAGACAACATTGTAAATAGCAAAAACCGAGTATGGA 1111
Query 1343 CCATCACAGTCTTGGGTTTTGGAAAATCAGAGAAGCCAAATATCATTTACACCGAGCTTT 1402
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1112 CCATTACAGTCTTGGGTTTTGGAAAATCAGAGAAGCCAAATATCATTTACACCGAGCTTT 1171
Query 1403 TGTGGGCTGAATTACTGCGGGATTTCATGGCTGAAGTAGTTGGGGAACCAGCACATTGCG 1462
||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1172 TGTGGGCTGAATTGCTGCGGGATTTTATGATTGAAGTAGTTGGGGAACCAGCACATTGCG 1231
Query 1463 TAGGGAATTCAATCGGTGGGTATTTCGTTGCATTAATGGCCTTTCTTTGGCCGGCGTTGG 1522
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1232 TAGGGAACTCAATCGGTGGGTATTTCGTTGCATTAATGGCCTTTCTTTGGCCGGCCTTGG 1291
Query 1523 TTAAGTCCGTTGTCCTTGTTAACAGTGCCGGCAATGTGGTACCTGGATACTCTCCTCTCC 1582
|||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1292 TTAAGTCCGTCGTCCTTGTTAACAGTGCTGGCAATGTAGTACCTGGATACTCTCCTCTCC 1351
Query 1583 CAATCTCTAGAGAAAGGCGAGTTCCATTTGGTGCACAATTTGGTTCTCGACTTCTTCTCT 1642
||||||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||
Sbjct 1352 CAATCTCTAGAGAAAGGGGAGTTCCATTTGGTGCACAACTGGGTGCTCGACTTCTTCTCT 1411
Query 1643 TTTTCCTACAACTCAATGTCAAAAAGCTATTAAAGGATTGTTATCCAGTT 1692
||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1412 TTTTCCTACAATTCAATGTCAAAAGGCTATTAAAGGATTGTTATCCAGTT 1461
Score = 196 bits (106), Expect = 5e-49
Identities = 118/124 (95%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 1012 AGAAGAAGTGTCCACTATGAAGCAATCGAGTATGAAAAAGAAAGGAATGCTGGATTTATT 1071
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 AGAAGAAGTGTTCACTATGAAGCAATCGAGTATGAAAAAGAAAGGAATGCTGGATTTATT 930
Query 1072 TCTCCTTTTGGATATTCAGCTGCCACAGTGTCTGCTGCAACTGATGCTGTATGCTCTATG 1131
||||| |||||||||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 931 TCTCCCTTTGGATATTCAGCTGCCACCGTGTCTGCTGCAACCGATGCTGTGCGCTCTATG 990
Query 1132 GAGT 1135
||||
Sbjct 991 GAGT 994
Score = 130 bits (70), Expect = 5e-29
Identities = 79/83 (95%), Gaps = 2/83 (2%)
Strand=Plus/Plus
Query 1851 GGGAATGGAAGATCCCATATCGGATCCGCAGAAGAAAGTAGCCTTACTGAAGGAGCTTTG 1910
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1462 GGG-ATGAAAGATCCCATATCGGATCCGCAGAAGAAAGTAGCCTTACTGAAGGAGCTTTG 1520
Query 1911 TCCAGCGATGGTGATAAAG-AAA 1932
||||||||||||||| ||| |||
Sbjct 1521 TCCAGCGATGGTGATTAAGCAAA 1543
Score = 122 bits (66), Expect = 8e-27
Identities = 70/72 (97%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 1941 AGGTCACTGTCCCCACGATGAAATCTCAGAAGAGGTAAATCCGATTATCTGCGAATGGAT 2000
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1587 AGGTCACTGTCCCCACGATGAAATCCCAGAAGAGGTAAATCCGATTATCTGCGAATGGAT 1646
Query 2001 AGTGAAGGTCAC 2012
|||||||| |||
Sbjct 1647 AGTGAAGGCCAC 1658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87493292765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5