BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25470.1
Length=944
Score E
Sequences producing significant alignments: (Bits) Value
Ahg CBF2_halleri 804 0.0
Ahg CBF3_halleri 798 0.0
Ahg CBF1_halleri 712 0.0
> Ahg CBF2_halleri
Length=642
Score = 804 bits (435), Expect = 0.0
Identities = 581/649 (90%), Gaps = 20/649 (3%)
Strand=Plus/Plus
Query 141 TCATTTTCTGCCTTTTCTGAAATGTTTGGCTCCGATTACGAGTCTCCGGTTTCCTCAGGC 200
||||||||||||||||||||||||||||||||||| ||||| | |||||||||
Sbjct 10 TCATTTTCTGCCTTTTCTGAAATGTTTGGCTCCGACTACGA-------G--TCCTCAGGC 60
Query 201 GGTGATTACAGTCCGAAGC-TT-GCCACGAGCTGCCCCAAGAAACCAGCGGGAAGGAAGA 258
|| ||||| | |||| | | || || || ||||| ||||||||||| || ||||||||||
Sbjct 61 GGCGATTATATTCCG-A-CATTGGCGACAAGCTGTCCCAAGAAACCTGCCGGAAGGAAGA 118
Query 259 AGTTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCAAAGAAACTCCGGTAAGT 318
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 119 AGTTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCTAAGAAACTCCGGTAAGT 178
Query 319 GGGTGTGTGAGTTGAGAGAGCCAAACAAGAAAACGAGGATTTGGCTCGGGACTTTCCAAA 378
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 179 GGGTGTGTGAGTTGAGAGAGCCAAACAAGAAAACGAGGATTTGGCTGGGGACTTTCCAAA 238
Query 379 CCGCTGAGATGGCAGCTCGTGCTCACGACGTCGCCGCCATAGCTCTCCGTGGCAGATCTG 438
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 239 CCGCTGAGATGGCCGCTCGTGCTCACGACGTCGCCGCCATAGCTCTCCGTGGCAGATCAG 298
Query 439 CCTGTCTCAATTTCGCTGACTCGGCTTGGCGGCTACGAATCCCGGAATCAACCTGTGCCA 498
||||||||||||||||||||||||||||| ||||||||||||| || ||||| || ||||
Sbjct 299 CCTGTCTCAATTTCGCTGACTCGGCTTGGAGGCTACGAATCCCCGAGTCAACGTGCGCCA 358
Query 499 AGGAAATCCAAAAGGCGGCGGCTGAAGCCGCGTTGAATTTTCAAGATGAGATGTGTCATA 558
|||||||||||||||| ||||||||||||||| || ||||||| ||||||||||| |||
Sbjct 359 AGGAAATCCAAAAGGCAGCGGCTGAAGCCGCGATGGCTTTTCAATATGAGATGTGTGATA 418
Query 559 TGACGACGGATGC-TCATGGTCTTGACATGGAGGAGACCTTGGTGGAGGCTATT-TATAC 616
||||||| | | |||||| ||||||||||| ||||| ||||||| |||||| || ||
Sbjct 419 CGACGACG-ACGGATCATGGCCTTGACATGGAAGAGACGATGGTGGAAGCTATTGTA-AC 476
Query 617 GCCGGAACAGAGCCAAGATGCGTTTTATATGGATGAAGAGGCGATGTTGGGGATGTCTAG 676
||||||||||||| || || |||||| | || || |||||||| || |||||||||||
Sbjct 477 GCCGGAACAGAGC---GACGCTTTTTATTTAGACGACGAGGCGATATTCGGGATGTCTAG 533
Query 677 TTTGTTGGATAACATGGCCGAAGGGATGCTTTTACCGTCGCCGTCGGTTCAATGGAACTA 736
|||||||||||| ||||||||||| ||||| || ||| ||||||| ||||||||||||||
Sbjct 534 TTTGTTGGATAATATGGCCGAAGGAATGCTCTTGCCGCCGCCGTCCGTTCAATGGAACTA 593
Query 737 TAATTTTGATGTCGAGGGAGATGATGACGTGTCCTTATGGAGCTATTAA 785
||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 594 TAATTTTGATGTCGAGGGAGATGATGACGTGTCGTTATGGAGTTATTAA 642
> Ahg CBF3_halleri
Length=652
Score = 798 bits (432), Expect = 0.0
Identities = 586/659 (89%), Gaps = 15/659 (2%)
Strand=Plus/Plus
Query 135 ATGAACTCATTTTCTGCCTTT-TCTGAAATGTTTGGCTCCGATTACGAGTCTCCGGTTTC 193
|||| ||||||||||| |||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGAGCTCATTTTCTG-CTTTCTCTGAAATGTTTGGCTCCGACTACGAGTCTCCGGTTTC 59
Query 194 CTCAGGCGGTGATTACAGTCCGAAGCTTGCCACGAGCTGCCCCAAGAAACCAGCGGGAAG 253
||||||||||||||| ||||||| ||| || |||||||||||||||||||| ||||| |
Sbjct 60 CTCAGGCGGTGATTATAGTCCGACGCTGGCGACGAGCTGCCCCAAGAAACCGGCGGGTCG 119
Query 254 GAAGAAGTTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCAAAGAAACTCCGG 313
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 120 TAAGAAGTTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCGGAGAAACTCCGG 179
Query 314 TAAGTGGGTGTGTGAGTTGAGAGAGCCAAACAAGAAAACGAGGATTTGGCTCGGGACTTT 373
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 180 TAAGTGGGTGTGTGAGTTGAGAGAGCCAAACAAGAAAACGAGGATTTGGCTGGGGACTTT 239
Query 374 CCAAACCGCTGAGATGGCAGCTCGTGCTCACGACGTCGCCGCCATAGCTCTCCGTGGCAG 433
|||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| |
Sbjct 240 CCAAACCGCTGAGATGGCCGCTCGTGCTCACGATGTCGCCGCCATAGCCCTCCGTGGCCG 299
Query 434 ATCTGCCTGTCTCAATTTCGCTGACTCGGCTTGGCGGCTACGAATCCCGGAATCAACCTG 493
||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 300 ATCCGCCTGTCTCAATTTCGCTGACTCTGCTTGGCGGCTACGAATCCCGGAATCGACTTG 359
Query 494 TGCCAAGGAAATCCAAAAGGCGGCGGCTGAAGCCGCGTTGAATTTTCAAGATGAGATGTG 553
|||||||||||||| ||||||||||||||||| |||||| ||||||| ||||||||||
Sbjct 360 CGCCAAGGAAATCCAGAAGGCGGCGGCTGAAGCTGCGTTGGCTTTTCAATATGAGATGTG 419
Query 554 TCATATG-ACGACGGATGC-TCATGGTCTT-GACATGGAGGAGACCTTGGTGGAGGCTAT 610
| |||| ||||| | | |||||| ||| |||||||||||||| || ||||||||| |
Sbjct 420 TGATATATACGACA-ACGGATCATGG-CTTCGACATGGAGGAGACGTTAGTGGAGGCT-T 476
Query 611 TTAT-ACGCCGGAACAGAGCCAAGA-TGCGTTTTATATGGATGAAGAGGCGATGTTGGGG 668
|| | ||| ||||||||||| |||| | || ||||||| || || ||||| ||||| |||
Sbjct 477 TTGTGACGGCGGAACAGAGCGAAGAAT-CGATTTATATAGACGAGGAGGCAATGTTCGGG 535
Query 669 ATGTCTAGTTTGTTGGATAACATGGCCGAAGGGATGCTTTTACCG-TCGCCGTCGGTTCA 727
||| | |||||||||| ||| |||||||||||||||||||| ||| | |||||| || ||
Sbjct 536 ATGCCAAGTTTGTTGGCTAATATGGCCGAAGGGATGCTTTTGCCGCT-GCCGTCAGTACA 594
Query 728 ATGGAA-CTATAATTTTGATGTCGAGGGAGATGATGACGTGTCCTTATGGAGCTATTAA 785
|||||| | |||||| |||||||| || ||||||||| | || |||||||| ||||||
Sbjct 595 ATGGAATC-ATAATTACGATGTCGACGGCGATGATGACTTATCGTTATGGAGTTATTAA 652
> Ahg CBF1_halleri
Length=648
Score = 712 bits (385), Expect = 0.0
Identities = 568/656 (87%), Gaps = 13/656 (2%)
Strand=Plus/Plus
Query 135 ATGAACTCATTTTCTGCCTTTTCTGAAATGTTTGGCTCCGATTACGAGTCTCCGGTTTCC 194
||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||
Sbjct 1 ATGAACTCATTTTCTGCTTTTTCTGAAATGTTTGGCTCCGATGGCGAGTCTCAAGTTTCT 60
Query 195 TCAGGCGGTGATTACAGTCCGAAGCTT-GCCACGAGCTGCCCCAAGAAACCAGCGGGAAG 253
|||||||| ||||| |||||||| || || || ||||| || |||||||| || || |
Sbjct 61 TCAGGCGGAGATTATTGTCCGAAG-TTGGCGACAAGCTGTCCGAAGAAACCGGCTGGTCG 119
Query 254 GAAGAAGTTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCAAAGAAACTCCGG 313
||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 120 AAAGAAGTTTCGCGAAACTCGTCACCCAATTTACAGAGGAGTTCGTCGGAGAAACTCCGG 179
Query 314 TAAGTGGGTGTGTGA-GTTGAGAGAGCCAAACAAGAAAACGAGGATTTGGCTCGGGACTT 372
||||||||||||||| || |||||||||||||||||| | ||||||||||| || ||||
Sbjct 180 TAAGTGGGTGTGTGAAGT-GAGAGAGCCAAACAAGAAGTCAAGGATTTGGCTTGGAACTT 238
Query 373 TCCAAACCGCTGAGATGGCAGCTCGTGCTCACGACGTCGCCGCCAT-AGCTCTCCGTGGC 431
|||||||||| ||||||||||||||||||||||| |||||||| || ||| ||||| |||
Sbjct 239 TCCAAACCGCAGAGATGGCAGCTCGTGCTCACGATGTCGCCGC-ATTAGCCCTCCGCGGC 297
Query 432 AGATCTGCCTGTCTCAATTTCGCTGACTCGGCTTGGCGGCTACGAATCCCGGAATCAACC 491
||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 298 AGATCAGCCTGTCTCAATTTTGCTGACTCGGCTTGGCGGCTACGAATCCCCGAATCAACA 357
Query 492 TGTGCCAAGGAAATCCA-AAAGGCGGCGGCTGAAGCCGCGTTGAATTTTCAAGATGAGAT 550
| ||||| || ||||| |||| | ||||||||||| |||||| ||| ||||||||||
Sbjct 358 AGCGCCAAAGATATCCAGAAAG-CTGCGGCTGAAGCGGCGTTGGCTTTCCAAGATGAGAG 416
Query 551 GTGTCATATGACGACGGATGCTCATGGTCTTGACATGGAGGAGACCTTGGTGGAGGCTAT 610
|||| ||| ||| | ||| |||||| || |||||||||||||| ||||||| |||||
Sbjct 417 GTGTGATACGACCA---ATGATCATGGCCTGGACATGGAGGAGACGATGGTGGAAGCTAT 473
Query 611 TTATACGCCGGAACAGAGCCAAGATGCGTTTTATATGGATGAAGAGGCGATG-TTGGGGA 669
||||||||||||||||||| |||||||||||||||||||||| ||| ||||| ||||| |
Sbjct 474 TTATACGCCGGAACAGAGCGAAGATGCGTTTTATATGGATGAGGAGACGATGATTGGG-A 532
Query 670 TGTCTAGTTTGTTGGATAACATGGCCGAAGGGATGCTTTTACCGTCGCCGTCGGTTCAAT 729
|| | |||||||||||||| |||||| |||| ||||| || ||| ||||||| |||||||
Sbjct 533 TGCCGAGTTTGTTGGATAATATGGCCCAAGGAATGCTCTTGCCGCCGCCGTCCGTTCAAT 592
Query 730 GGAACTATAATTTTGATGTCGAGGGAGATGATGACGTGTCCTTATGGAGCTATTAA 785
|||||||||||| || | ||||||||||| ||||||||| || ||||| | ||||
Sbjct 593 GGAACTATAATTACGACGGCGAGGGAGATGGTGACGTGTCGTTGTGGAGTTTTTAA 648
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35034960723
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5