BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25480.1
Length=908
Score E
Sequences producing significant alignments: (Bits) Value
Ahg CBF3_halleri 821 0.0
Ahg CBF1_halleri 667 0.0
Ahg CBF2_halleri 632 1e-180
> Ahg CBF3_halleri
Length=652
Score = 821 bits (444), Expect = 0.0
Identities = 592/661 (90%), Gaps = 19/661 (3%)
Strand=Plus/Plus
Query 119 ATGAACTCATTTTCTGCTTTTTCTGAAATGTTTGGCTCCGATTACGAGTCTTCGGTTTCC 178
|||| ||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||
Sbjct 1 ATGAGCTCATTTTCTGCTTTCTCTGAAATGTTTGGCTCCGACTACGAGTCTCCGGTTTCC 60
Query 179 TCAGGCGGTGATTATATTCCGACGCTTGCGAGC-AGCTGCCCCAAGAAACCGGCGGGTCG 237
|||||||||||||||| ||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 61 TCAGGCGGTGATTATAGTCCGACGCTGGCGA-CGAGCTGCCCCAAGAAACCGGCGGGTCG 119
Query 238 TAAGAAGTTTCGTGAGACTCGTCACCCAATATACAGAGGAGTTCGTCGGAGAAACTCCGG 297
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 120 TAAGAAGTTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCGGAGAAACTCCGG 179
Query 298 TAAGTGGGTTTGTGAGGTT-AGAGAACCAAACAAGAAAACAAGGATTTGGCTCGGAACAT 356
||||||||| |||||| || ||||| |||||||||||||| ||||||||||| || || |
Sbjct 180 TAAGTGGGTGTGTGAG-TTGAGAGAGCCAAACAAGAAAACGAGGATTTGGCTGGGGAC-T 237
Query 357 TTC-AAACCGCTGAGATGGCAGCTCGAGCTCACGACGTTGCCGCTTTAGCCCTTCGTGGC 415
||| |||||||||||||||| ||||| |||||||| || ||||| ||||||| ||||||
Sbjct 238 TTCCAAACCGCTGAGATGGCCGCTCGTGCTCACGATGTCGCCGCCATAGCCCTCCGTGGC 297
Query 416 CGATCAGCCTGTCTCAATTTCGCTGACTCGGCTTGGAGACTCCGAATCCCGGAATCAACT 475
||||| ||||||||||||||||||||||| |||||| | || |||||||||||||| |||
Sbjct 298 CGATCCGCCTGTCTCAATTTCGCTGACTCTGCTTGGCGGCTACGAATCCCGGAATCGACT 357
Query 476 TGCGCTAAGGACATCCAAAAGGCGGCGGCTGAAGCTGCGTTGGCGTTTCAGGATGAGATG 535
||||| ||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 358 TGCGCCAAGGAAATCCAGAAGGCGGCGGCTGAAGCTGCGTTGGCTTTTCAATATGAGATG 417
Query 536 TGTGATG----CGACGACGGATCATGGCTTCGACATGGAGGAGACGTTGGTGGAGGCTAT 591
|||||| |||| |||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 418 TGTGATATATACGACAACGGATCATGGCTTCGACATGGAGGAGACGTTAGTGGAGGCTTT 477
Query 592 T-TACACGGCGGAACAGAGCGAA-AATGCGTTTTATAT-GCACGATGAGGCGATGTTTGA 648
| | |||||||||||||||||| ||| || ||||||| | |||| ||||| ||||| |
Sbjct 478 TGTG-ACGGCGGAACAGAGCGAAGAAT-CGATTTATATAG-ACGAGGAGGCAATGTTCGG 534
Query 649 GATGCCGAGTTTGTTGGCTAATATGGCAGAAGGGATGCTTTTGCCGCTTCCGTCCGTACA 708
|||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 535 GATGCCAAGTTTGTTGGCTAATATGGCCGAAGGGATGCTTTTGCCGCTGCCGTCAGTACA 594
Query 709 GTGGAATCATAATCATGAAGTCGACGGCGATGATGACGACGTATCGTTATGGAGttatta 768
|||||||||||| | || |||||||||||||||||| |||||||||||||||||||
Sbjct 595 ATGGAATCATAATTACGATGTCGACGGCGATGATGACT---TATCGTTATGGAGTTATTA 651
Query 769 a 769
|
Sbjct 652 A 652
> Ahg CBF1_halleri
Length=648
Score = 667 bits (361), Expect = 0.0
Identities = 563/659 (85%), Gaps = 19/659 (3%)
Strand=Plus/Plus
Query 119 ATGAACTCATTTTCTGCTTTTTCTGAAATGTTTGGCTCCGATTACGAGTCTTCG-GTTTC 177
|||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||
Sbjct 1 ATGAACTCATTTTCTGCTTTTTCTGAAATGTTTGGCTCCGATGGCGAGTCT-CAAGTTTC 59
Query 178 CTCAGGCGGTGATTATAT-TCCGACGCTTG-CGAGCA-GCTGCCCCAAGAAACCGGCGGG 234
|||||||| |||||| | ||||| | ||| ||| || |||| || ||||||||||| ||
Sbjct 60 TTCAGGCGGAGATTAT-TGTCCGAAG-TTGGCGA-CAAGCTGTCCGAAGAAACCGGCTGG 116
Query 235 TCGTAAGAAGTTTCGTGAGACTCGTCACCCAATATACAGAGGAGTTCGTCGGAGAAACTC 294
||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 117 TCGAAAGAAGTTTCGCGAAACTCGTCACCCAATTTACAGAGGAGTTCGTCGGAGAAACTC 176
Query 295 CGGTAAGTGGGTTTGTGAGGTTAGAGAACCAAACAAGAAAACAAGGATTTGGCTCGGAAC 354
|||||||||||| ||||| || ||||| ||||||||||| ||||||||||||| |||||
Sbjct 177 CGGTAAGTGGGTGTGTGAAGTGAGAGAGCCAAACAAGAAGTCAAGGATTTGGCTTGGAAC 236
Query 355 ATTTC-AAACCGCTGAGATGGCAGCTCGAGCTCACGACGTTGCCGCTTTAGCCCTTCGTG 413
|||| ||||||| |||||||||||||| |||||||| || ||||| |||||||| || |
Sbjct 237 -TTTCCAAACCGCAGAGATGGCAGCTCGTGCTCACGATGTCGCCGCATTAGCCCTCCGCG 295
Query 414 GCCGATCAGCCTGTCTCAATTTCGCTGACTCGGCTTGGAGACTCCGAATCCCGGAATCAA 473
|| ||||||||||||||||||| ||||||||||||||| | || |||||||| |||||||
Sbjct 296 GCAGATCAGCCTGTCTCAATTTTGCTGACTCGGCTTGGCGGCTACGAATCCCCGAATCAA 355
Query 474 CTTGCGCTAAGGACATCCA-AAAGGCGGCGGCTGAAGCTGCGTTGGCGTTTC-AGGATGA 531
| |||| || || ||||| |||| | ||||||||||| |||||||| |||| | |||||
Sbjct 356 CAAGCGCCAAAGATATCCAGAAAG-CTGCGGCTGAAGCGGCGTTGGC-TTTCCAAGATGA 413
Query 532 GATGTGTGATGCGACGACGGATCATGGCTTCGACATGGAGGAGACGTTGGTGGAGGCTAT 591
|| ||||||| |||| | ||||||||| | ||||||||||||||| ||||||| |||||
Sbjct 414 GAGGTGTGATACGACCAATGATCATGGCCTGGACATGGAGGAGACGATGGTGGAAGCTAT 473
Query 592 TTACACGGCGGAACAGAGCGAAAATGCGTTTTATATGCACGATGAGGCGATGTTTGAGAT 651
||| ||| |||||||||||||| |||||||||||||| | || ||| ||||| ||| |||
Sbjct 474 TTATACGCCGGAACAGAGCGAAGATGCGTTTTATATGGATGAGGAGACGATGATTGGGAT 533
Query 652 GCCGAGTTTGTTGGCTAATATGGCAGAAGGGATGCTTTTGCCGCTTCCGTCCGTACAGTG 711
|||||||||||||| ||||||||| |||| ||||| ||||||| |||||||| || ||
Sbjct 534 GCCGAGTTTGTTGGATAATATGGCCCAAGGAATGCTCTTGCCGCCGCCGTCCGTTCAATG 593
Query 712 GAA-TCATAATCATGAAGTCGACGGCGATGATGACGACGTATCGTTATGGAGttattaa 769
||| | ||||| | || | ||| || || |||| ||||| ||||| ||||||| ||||
Sbjct 594 GAACT-ATAATTACGACGGCGA-GG-GA-GATGGTGACGTGTCGTTGTGGAGTTTTTAA 648
> Ahg CBF2_halleri
Length=642
Score = 632 bits (342), Expect = 1e-180
Identities = 557/656 (85%), Gaps = 34/656 (5%)
Strand=Plus/Plus
Query 125 TCATTTTCTGCTTTTTCTGAAATGTTTGGCTCCGATTACGAGTCTTCGGTTTCCTCAGGC 184
||||||||||| ||||||||||||||||||||||| ||||| | |||||||||
Sbjct 10 TCATTTTCTGCCTTTTCTGAAATGTTTGGCTCCGACTACGA-------G--TCCTCAGGC 60
Query 185 GGTGATTATATTCCGACGCTT-GCGAGC-AGCTGCCCCAAGAAACCGGCGGGTCGTAAGA 242
|| |||||||||||||| || |||| | ||||| ||||||||||| || || | ||||
Sbjct 61 GGCGATTATATTCCGAC-ATTGGCGA-CAAGCTGTCCCAAGAAACCTGCCGGAAGGAAGA 118
Query 243 AGTTTCGTGAGACTCGTCACCCAATATACAGAGGAGTTCGTCGGAGAAACTCCGGTAAGT 302
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 119 AGTTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCTAAGAAACTCCGGTAAGT 178
Query 303 GGGTTTGTGAGGTT-AGAGAACCAAACAAGAAAACAAGGATTTGGCTCGGAACATTT-CA 360
|||| ||||| ||| ||||| |||||||||||||| ||||||||||| || || ||| ||
Sbjct 179 GGGTGTGTGA-GTTGAGAGAGCCAAACAAGAAAACGAGGATTTGGCTGGGGAC-TTTCCA 236
Query 361 AACCGCTGAGATGGCAGCTCGAGCTCACGACGTTGCCGCTTTAGCCCTTCGTGGCCGATC 420
||||||||||||||| ||||| ||||||||||| ||||| |||| || |||||| ||||
Sbjct 237 AACCGCTGAGATGGCCGCTCGTGCTCACGACGTCGCCGCCATAGCTCTCCGTGGCAGATC 296
Query 421 AGCCTGTCTCAATTTCGCTGACTCGGCTTGGAGACTCCGAATCCCGGAATCAACTTGCGC 480
||||||||||||||||||||||||||||||||| || |||||||| || ||||| |||||
Sbjct 297 AGCCTGTCTCAATTTCGCTGACTCGGCTTGGAGGCTACGAATCCCCGAGTCAACGTGCGC 356
Query 481 TAAGGACATCCAAAAGGCGGCGGCTGAAGCTGCGTTGGCGTTTCAGGATGAGATGTGTGA 540
||||| ||||||||||| ||||||||||| ||| |||| ||||| |||||||||||||
Sbjct 357 CAAGGAAATCCAAAAGGCAGCGGCTGAAGCCGCGATGGCTTTTCAATATGAGATGTGTGA 416
Query 541 T--G-CGACGACGGATCATGGC-TTCGACATGGAGGAGACGTTGGTGGAGGCTATT-TAC 595
| | ||||||||||||||||| || |||||||| |||||| ||||||| |||||| ||
Sbjct 417 TACGACGACGACGGATCATGGCCTT-GACATGGAAGAGACGATGGTGGAAGCTATTGTA- 474
Query 596 ACGGCGGAACAGAGCGAAAATGCGTTTTATAT-GCACGATGAGGCGATGTTTGAGATGCC 654
||| ||||||||||||| || |||||| | | |||| |||||||| || | |||| |
Sbjct 475 ACGCCGGAACAGAGCGAC---GCTTTTTATTTAG-ACGACGAGGCGATATTCGGGATGTC 530
Query 655 GAGTTTGTTGGCTAATATGGCAGAAGGGATGCTTTTGCCGCTTCCGTCCGTACAGTGGAA 714
|||||||||| ||||||||| ||||| ||||| ||||||| |||||||| || |||||
Sbjct 531 TAGTTTGTTGGATAATATGGCCGAAGGAATGCTCTTGCCGCCGCCGTCCGTTCAATGGAA 590
Query 715 -TCATAATCATGAAGTCGACGGCGATGATGACGACGTATCGTTATGGAGttattaa 769
| ||||| ||| ||||| || || ||||| ||||| ||||||||||||||||||
Sbjct 591 CT-ATAATTTTGATGTCGA-GG-GA-GATGATGACGTGTCGTTATGGAGTTATTAA 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33662535711
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5