BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25490.1
Length=946
Score E
Sequences producing significant alignments: (Bits) Value
Ahg CBF1_halleri 795 0.0
Ahg CBF2_halleri 717 0.0
Ahg CBF3_halleri 686 0.0
> Ahg CBF1_halleri
Length=648
Score = 795 bits (430), Expect = 0.0
Identities = 578/648 (89%), Gaps = 16/648 (2%)
Strand=Plus/Plus
Query 164 ATGAACTCATTTTCAGCTTTTTCTGAAATGTTTGGCTCCGATTACGAG-C-C-----TC- 215
|||||||||||||| ||||||||||||||||||||||||||| |||| | | ||
Sbjct 1 ATGAACTCATTTTCTGCTTTTTCTGAAATGTTTGGCTCCGATGGCGAGTCTCAAGTTTCT 60
Query 216 -AAGGCGGAGATTATTGTCCGACGTTGGCCACGAGTTGTCCGAAGAAACCGGCGGGCCGT 274
|||||||||||||||||||| |||||| || || ||||||||||||||||| || ||
Sbjct 61 TCAGGCGGAGATTATTGTCCGAAGTTGGCGACAAGCTGTCCGAAGAAACCGGCTGGTCGA 120
Query 275 AAGAAGTTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCAAAGAAACTCCGGT 334
||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 AAGAAGTTTCGCGAAACTCGTCACCCAATTTACAGAGGAGTTCGTCGGAGAAACTCCGGT 180
Query 335 AAGTGGGTTTCTGAAGTGAGAGAGCCAAACAAGAAAACCAGGATTTGGCTCGGGACTTTC 394
|||||||| | |||||||||||||||||||||||| | ||||||||||| || ||||||
Sbjct 181 AAGTGGGTGTGTGAAGTGAGAGAGCCAAACAAGAAGTCAAGGATTTGGCTTGGAACTTTC 240
Query 395 CAAACCGCTGAGATGGCAGCTCGTGCTCACGACGTCGCTGCATTAGCCCTCCGTGGCCGA 454
|||||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||| ||
Sbjct 241 CAAACCGCAGAGATGGCAGCTCGTGCTCACGATGTCGCCGCATTAGCCCTCCGCGGCAGA 300
Query 455 TCAGCATGTCTCAACTTCGCTGACTCGGCTTGGCGGCTACGAATCCCGGAGTCAACATGC 514
||||| |||||||| || ||||||||||||||||||||||||||||| || |||||| ||
Sbjct 301 TCAGCCTGTCTCAATTTTGCTGACTCGGCTTGGCGGCTACGAATCCCCGAATCAACAAGC 360
Query 515 GCCAAGGATATCCAAAAAGCGGCTGCTGAAGCGGCGTTGGCTTTTCAAGATGAGACGTGT 574
||||| |||||||| ||||| || |||||||||||||||||||| |||||||||| ||||
Sbjct 361 GCCAAAGATATCCAGAAAGCTGCGGCTGAAGCGGCGTTGGCTTTCCAAGATGAGAGGTGT 420
Query 575 GATACGACGACCACGAATCATGGCCTGGACATGGAGGAGACGATGGTGGAAGCTATTTAT 634
|||||||| | | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GATACGAC--CAATG-ATCATGGCCTGGACATGGAGGAGACGATGGTGGAAGCTATTTAT 477
Query 635 ACACCGGAACAGAGCGAAGGTGCGTTTTATATGGATGAGGAGACAATGTTTGGGATGCCG 694
|| |||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||
Sbjct 478 ACGCCGGAACAGAGCGAAGATGCGTTTTATATGGATGAGGAGACGATGATTGGGATGCCG 537
Query 695 ACTTTGTTGGATAATATGGCTGAAGGCATGCTTTTACCGCCGCCGTCTGTTCAATGGAA- 753
| |||||||||||||||||| |||| ||||| || ||||||||||| |||||||||||
Sbjct 538 AGTTTGTTGGATAATATGGCCCAAGGAATGCTCTTGCCGCCGCCGTCCGTTCAATGGAAC 597
Query 754 TCATAATTATGACGGCGAAGGAGATGGTGACGTGTCGCTT-TGGAGTT 800
| ||||||| |||||||| |||||||||||||||||| || |||||||
Sbjct 598 T-ATAATTACGACGGCGAGGGAGATGGTGACGTGTCG-TTGTGGAGTT 643
> Ahg CBF2_halleri
Length=642
Score = 717 bits (388), Expect = 0.0
Identities = 561/643 (87%), Gaps = 17/643 (3%)
Strand=Plus/Plus
Query 170 TCATTTTCAGCTTTTTCTGAAATGTTTGGCTCCGATTACGAG-CCTCAAGGCGGAGATTA 228
|||||||| || ||||||||||||||||||||||| |||||| |||| |||||| |||||
Sbjct 10 TCATTTTCTGCCTTTTCTGAAATGTTTGGCTCCGACTACGAGTCCTC-AGGCGGCGATTA 68
Query 229 T-TGTCCGACGTTGGCCACGAGTTGTCCGAAGAAACCGGCGGGCCGTAAGAAGTTTCGTG 287
| | |||||| ||||| || || ||||| |||||||| || || | |||||||||||||
Sbjct 69 TAT-TCCGACATTGGCGACAAGCTGTCCCAAGAAACCTGCCGGAAGGAAGAAGTTTCGTG 127
Query 288 AGACTCGTCACCCAATTTACAGAGGAGTTCGTCAAAGAAACTCCGGTAAGTGGGTTTCTG 347
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 128 AGACTCGTCACCCAATTTACAGAGGAGTTCGTCTAAGAAACTCCGGTAAGTGGGTGTGTG 187
Query 348 AAGT-GAGAGAGCCAAACAAGAAAACCAGGATTTGGCTCGGGACTTTCCAAACCGCTGAG 406
| || ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 188 A-GTTGAGAGAGCCAAACAAGAAAACGAGGATTTGGCTGGGGACTTTCCAAACCGCTGAG 246
Query 407 ATGGCAGCTCGTGCTCACGACGTCGCTGC-ATTAGCCCTCCGTGGCCGATCAGCATGTCT 465
||||| |||||||||||||||||||| || || ||| ||||||||| ||||||| |||||
Sbjct 247 ATGGCCGCTCGTGCTCACGACGTCGCCGCCAT-AGCTCTCCGTGGCAGATCAGCCTGTCT 305
Query 466 CAACTTCGCTGACTCGGCTTGGCGGCTACGAATCCCGGAGTCAACATGCGCCAAGGATAT 525
||| |||||||||||||||||| ||||||||||||| |||||||| ||||||||||| ||
Sbjct 306 CAATTTCGCTGACTCGGCTTGGAGGCTACGAATCCCCGAGTCAACGTGCGCCAAGGAAAT 365
Query 526 CCAAAAAGCGGCTGCTGAAGCGGCGTTGGCTTTTCAAGATGAGACGTGTGATACGACGAC 585
|||||| || || |||||||| ||| ||||||||||| |||||| |||||||||||||||
Sbjct 366 CCAAAAGGCAGCGGCTGAAGCCGCGATGGCTTTTCAATATGAGATGTGTGATACGACGAC 425
Query 586 CACGAATCATGGCCTGGACATGGAGGAGACGATGGTGGAAGCTATT-TATACACCGGAAC 644
||| |||||||||| |||||||| ||||||||||||||||||||| || || |||||||
Sbjct 426 GACGGATCATGGCCTTGACATGGAAGAGACGATGGTGGAAGCTATTGTA-ACGCCGGAAC 484
Query 645 AGAGCGAAGGTGCGTTTTATATGGATGAGGAGACAATGTTTGGGATGCCGACTTTGTTGG 704
||||||| | | |||||| | || || ||| | || || |||||| | | ||||||||
Sbjct 485 AGAGCGACGCT---TTTTATTTAGACGACGAGGCGATATTCGGGATGTCTAGTTTGTTGG 541
Query 705 ATAATATGGCTGAAGGCATGCTTTTACCGCCGCCGTCTGTTCAATGGAA-TCATAATTAT 763
|||||||||| ||||| ||||| || ||||||||||| ||||||||||| | |||||| |
Sbjct 542 ATAATATGGCCGAAGGAATGCTCTTGCCGCCGCCGTCCGTTCAATGGAACT-ATAATTTT 600
Query 764 GACGGCGAAGGAGATGGTGACGTGTCGCTT-TGGAGTTACTAA 805
|| | ||| ||||||| |||||||||| || |||||||| |||
Sbjct 601 GATGTCGAGGGAGATGATGACGTGTCG-TTATGGAGTTATTAA 642
> Ahg CBF3_halleri
Length=652
Score = 686 bits (371), Expect = 0.0
Identities = 565/657 (86%), Gaps = 20/657 (3%)
Strand=Plus/Plus
Query 164 ATGAACTCATTTTCAGCTTTTTCTGAAATGTTTGGCTCCGATTACGAG---CC----T-C 215
|||| ||||||||| ||||| |||||||||||||||||||| |||||| || | |
Sbjct 1 ATGAGCTCATTTTCTGCTTTCTCTGAAATGTTTGGCTCCGACTACGAGTCTCCGGTTTCC 60
Query 216 -AAGGCGGAGATTATTGTCCGACGTTGGCCACGAGTTGTCCGAAGAAACCGGCGGGCCGT 274
|||||| |||||| |||||||| |||| ||||| || || |||||||||||||| |||
Sbjct 61 TCAGGCGGTGATTATAGTCCGACGCTGGCGACGAGCTGCCCCAAGAAACCGGCGGGTCGT 120
Query 275 AAGAAGTTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCAAAGAAACTCCGGT 334
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 AAGAAGTTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCGGAGAAACTCCGGT 180
Query 335 AAGTGGGTTTCTGAAGT-GAGAGAGCCAAACAAGAAAACCAGGATTTGGCTCGGGACTTT 393
|||||||| | ||| || ||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 181 AAGTGGGTGTGTGA-GTTGAGAGAGCCAAACAAGAAAACGAGGATTTGGCTGGGGACTTT 239
Query 394 CCAAACCGCTGAGATGGCAGCTCGTGCTCACGACGTCGCTGC-ATTAGCCCTCCGTGGCC 452
|||||||||||||||||| |||||||||||||| ||||| || || ||||||||||||||
Sbjct 240 CCAAACCGCTGAGATGGCCGCTCGTGCTCACGATGTCGCCGCCAT-AGCCCTCCGTGGCC 298
Query 453 GATCAGCATGTCTCAACTTCGCTGACTCGGCTTGGCGGCTACGAATCCCGGAGTCAACAT 512
|||| || |||||||| ||||||||||| ||||||||||||||||||||||| || || |
Sbjct 299 GATCCGCCTGTCTCAATTTCGCTGACTCTGCTTGGCGGCTACGAATCCCGGAATCGACTT 358
Query 513 GCGCCAAGGATATCCAAAAAGCGGCTGCTGAAGCGGCGTTGGCTTTTCAAGATGAGACGT 572
|||||||||| ||||| || ||||| |||||||| ||||||||||||||| |||||| ||
Sbjct 359 GCGCCAAGGAAATCCAGAAGGCGGCGGCTGAAGCTGCGTTGGCTTTTCAATATGAGATGT 418
Query 573 GTGATACG-ACGACCACGAATCATGGCCTGGACATGGAGGAGACGATGGTGGAAGCTATT 631
|||||| ||||| ||| |||||||| | ||||||||||||||| | ||||| ||| ||
Sbjct 419 GTGATATATACGACAACGGATCATGGCTTCGACATGGAGGAGACGTTAGTGGAGGCT-TT 477
Query 632 TAT-ACACCGGAACAGAGCGAAGG-TGCGTTTTATATGGATGAGGAGACAATGTTTGGGA 689
| | || ||||||||||||||| | || ||||||| || |||||| ||||||| ||||
Sbjct 478 TGTGACGGCGGAACAGAGCGAAGAAT-CGATTTATATAGACGAGGAGGCAATGTTCGGGA 536
Query 690 TGCCGACTTTGTTGGATAATATGGCTGAAGGCATGCTTTTACCGCCGCCGTCTGTTCAAT 749
|||| | |||||||| ||||||||| ||||| |||||||| |||| |||||| || ||||
Sbjct 537 TGCCAAGTTTGTTGGCTAATATGGCCGAAGGGATGCTTTTGCCGCTGCCGTCAGTACAAT 596
Query 750 GGAATCATAATTATGACGGCGAAGGAGATGGTGACGTGTCGCTT-TGGAGTTACTAA 805
||||||||||||| || | ||| || |||| |||| | ||| || |||||||| |||
Sbjct 597 GGAATCATAATTACGATGTCGACGGCGATGATGACTTATCG-TTATGGAGTTATTAA 652
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35111206557
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5