BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25500.1
Length=1362
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492278 jgi|Araly1|492278|fgenesh2_kg.7__1711__AT4G25500.1 1792 0.0
Ahg495275 jgi|Araly1|495275|fgenesh2_kg.8__1091__AT5G52040.2 782 0.0
> Ahg492278 jgi|Araly1|492278|fgenesh2_kg.7__1711__AT4G25500.1
Length=1197
Score = 1792 bits (970), Expect = 0.0
Identities = 1132/1208 (94%), Gaps = 20/1208 (2%)
Strand=Plus/Plus
Query 59 CTTCTTCTAGGGCTTCCACGCGACTACGCCTGC-CAA--AATCATTCTACAGGAAGCATG 115
||| |||||||||||||||||||||||| |||| || |||||||| ||||||||||||
Sbjct 1 CTTGTTCTAGGGCTTCCACGCGACTACGACTGCTAAATCAATCATTCGACAGGAAGCATG 60
Query 116 AAGCCAGTCTTCTGTGGGAACTTTGAGTATGATGCGCGCGAAGGTGACCTGGAACGACTA 175
|||||||||||||||||||| |||||||||||||| || || ||||| || ||||| ||
Sbjct 61 AAGCCAGTCTTCTGTGGGAATTTTGAGTATGATGCACGTGAGGGTGATCTCGAACGCCTT 120
Query 176 TTCAGGAAATACGGCAAGGTTGAGAGGGTTGATATGAAAGCTGGGTTTGCTTTTGTATAC 235
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 TTCAGGAAATACGGCAAGGTTGAGAGGGTTGATATGAAAGCTGGGTTTGCTTTTGTGTAC 180
Query 236 ATGGAAGATGAAAGGGATGCGGAAGATGCCATCCGAGCACTTGACCGCT-TTGAATTTGG 294
|||||||||||||||||||| ||||||||||||||||| |||||||| | ||||||||||
Sbjct 181 ATGGAAGATGAAAGGGATGCTGAAGATGCCATCCGAGCCCTTGACCG-TATTGAATTTGG 239
Query 295 GCGTAAGGGACGCAGACTTCGTGTTGAATGGACAAAGAGTGAACGTGGAGGTGATAAAAG 354
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 240 GCGTAAGGGACGAAGACTTCGTGTTGAATGGACTAAGAGTGAACGTGGAGGTGATAGAAG 299
Query 355 ATCTGGTGGTGGTTCAAGGAGATCCTCATCCAGCATGAGACCTTCCAAGACTCTCTTTGT 414
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATCTGGTGGCGGTTCAAGGAGATCCTCATCCAGCATGAGACCTTCCAAGACTCTCTTTGT 359
Query 415 GATTAACTTTGATGCGGATAATACTAGGACCCGGGATCTAGAGAAACACTTTGAGCCGTA 474
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 360 GATTAACTTTGATGCGGATAATACTAGGACCCGGGATCTAGAGAGACACTTTGAGCCGTA 419
Query 475 TGGAAAGATCGTAAACGTTAGGATCAGGAGGAATTTTGCATTTATCCAGTACGAGGCACA 534
|||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 420 TGGAAAGATCGTAAACGTTAGGATCAGGAGGAATTTCGCATTTATCCAATATGAGGCACA 479
Query 535 AGAGGATGCCACCAGAGCATTGGATGCTTCAAATAACAGTAAGCTGATGGATAAGGTGAT 594
|||||||||||| |||||| |||| ||| |||||||||||||||||||||||||||||||
Sbjct 480 AGAGGATGCCACAAGAGCACTGGACGCTACAAATAACAGTAAGCTGATGGATAAGGTGAT 539
Query 595 CTCGGTGGAGTATGCTGTGAAGGATGATGATGCTAGAGGAAATGGACACAGTCCTGAAAG 654
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 CTCGGTGGAGTATGCGGTGAAGGATGATGATGCTAGAGGGAATGGACACAGTCCTGAAAG 599
Query 655 ACGCCGTGATAGGTCACCTGAAAGGAGAAGGCGATCACCTAGTCCTTACAAAAGAGAAAG 714
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 ACGCCGTGATAGGTCACCTGAAAGGAGAAGGCGGTCACCTAGTCCTTACAAAAGAGAAAG 659
Query 715 AGGAAGCCCTGATTATGGCCGAGGAGCTAGTCCTGTTGCTGCCTACAGAAAGGAAAGGAC 774
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 660 AGGAAGCCCTGATTATGGCCGAGGTGCTAGTCCTGTTGCTGCCTACAGAAAGGAAAAAAC 719
Query 775 CAGTCCTGACTATGGTCGAAGACGTAGCCCAAGTCCTTACAAGAAATCAAGACGTGGCAG 834
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 720 CAGTCCTGACTATGGTCGAAGACGTAGCCAAAGTCCTTACAAGAAATCAAGGCGTGGCAG 779
Query 835 TCCCGAGTATGGTCGTGACCGCAGAGGCAATGATAGCCCTCGCAGGAGGGAGAGAGTCGC 894
|||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CCCCGAGTACGGCCGCGACCGCAGAGGCAATGATAGCCCTCGCAGGAGGGAGAGAGTCGT 839
Query 895 AAGCCCTACTAAGTACAGCCGCAGTCCCAACAACAAGAGAGAGAGGATGAGCCCTAATCA 954
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AAGCCCTA--A-GTACAGCCGCAGTCCCAACAACAAGAGAGAGAGGATGAGCCCTAATCA 896
Query 955 CAGCCCGTTCAAGAAGGAGAGTCCGAGAAATGGGGTTGGTGAAGTTGAAAGTCCCATTGA 1014
||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||| ||
Sbjct 897 CAGCCCGTTTAAGAAGGAAAGTCCGAGAAATGGGGTTGGTGAAGTTGATAGTCCCAACGA 956
Query 1015 AAGGAGAGAGAGATCGAGGTCTAGCCCCGAGAATGGCCAAGTTGAAAGCCCTGGGTCAAT 1074
|||||| |||||||| ||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 957 AAGGAGGGAGAGATCAAGGTCTAGCCCGGAGAATGGCCAAGTTGAAAGCCCTGGCTCAAT 1016
Query 1075 AGGAAGAAGAGACAGTGATGGTGGGTATGATGGTGCAGAGAGCCCAATGCAGAAGAGCCG 1134
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1017 AGGAAGAAGAGACAGCGATGGTGGTTATGATGGTGCAGAGAGCCCAATGCAGAAGAGCCG 1076
Query 1135 GTCTCCTCGTTCGCCACCAGCTGACGAGTGAT-AAGAGTGGATCCACAA--TCTCTATCA 1191
||||| |||||||| ||||||||||||||| || ||||||||||||| |||||||||
Sbjct 1077 GTCTC---GTTCGCCAGCAGCTGACGAGTGATGAA-AGTGGATCCACAAACTCTCTATCA 1132
Query 1192 AAGT-AGGATGTTGTAACTGTTTGTAGTCAACAACGCTATGTC-GTCGTGATTAGTTTTT 1249
||| || |||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1133 GAGTTAGAATGTTGTAACTGTTTGTAGTCAAC---GCTATGTTTGTCGTGATTAGTTTTT 1189
Query 1250 GTCGTTTG 1257
||| ||||
Sbjct 1190 GTCTTTTG 1197
> Ahg495275 jgi|Araly1|495275|fgenesh2_kg.8__1091__AT5G52040.2
Length=1330
Score = 782 bits (423), Expect = 0.0
Identities = 625/721 (87%), Gaps = 19/721 (3%)
Strand=Plus/Plus
Query 106 AGGAAGCATGAAGCCAGTCTTCTGTGGGAACTTTGAGTATGATGCGCGCGAAG-GTGACC 164
||||| ||||||||| ||||| || |||||||||||||||||||| || | || |||| |
Sbjct 11 AGGAAACATGAAGCCTGTCTTTTGCGGGAACTTTGAGTATGATGCTCGTG-AGAGTGATC 69
Query 165 TGGAACGACTATTCAGGAA-ATACGGCAAGGTTGAGAGGGTTGATATGAAAGCTGGGTTT 223
| || || || |||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 70 TTGAGCGGCTTTTCA-AAAGATACGGCAAGGTTGAGAGGGTTGATATGAAAGCTGGGTTT 128
Query 224 GCTTTTGTATACATGGAAGATGAAAGGGATGCGGAAGATGCCATCCGAGCACTTGACCGC 283
|||||||| || |||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 129 GCTTTTGTCTATATGGAAGATGAAAGGGATGCTGAAGATGCCATCCGAGCGCTTGATCGC 188
Query 284 TTTGAATTTGGGCGTAAGGGACGCAGACTTCGTGTTGAATGGACAAAGAGTGAACGTGGA 343
||||||| ||| || | |||||||||||| |||||||| |||||||||| ||| ||||||
Sbjct 189 TTTGAATATGGCCGCACGGGACGCAGACTCCGTGTTGAGTGGACAAAGAATGACCGTGGA 248
Query 344 GGTGATAAAAGATCTGGTGGTGGTTCAAGGAGATCCTCATCCAGCATGAGACCTTCCAAG 403
|||| | |||||| |||||| | | |||||||| || || |||||||||||||||||
Sbjct 249 GGTGCTGGAAGATCAGGTGGT--T-CGAGGAGATCATCGTCTGGCATGAGACCTTCCAAG 305
Query 404 ACTCTCTTTGTGATTAACTTTGATGCGGATAATACTAGGACCCGGGATCTAG-AGAAACA 462
||||| |||||||| ||||||||||| | || |||||||| ||||| || | ||| |||
Sbjct 306 ACTCTGTTTGTGATCAACTTTGATGCACAGAACACTAGGACTCGGGA-CTTGGAGAGACA 364
Query 463 CTTTGAGCCGTATGGAAAGATCGTAAACGTTAGGATCAGGAGGAATTTTGCATTTATCCA 522
|||||||||||||||||| || || || ||||| ||||| ||||||||||||||||||||
Sbjct 365 CTTTGAGCCGTATGGAAAAATTGTTAATGTTAGAATCAGAAGGAATTTTGCATTTATCCA 424
Query 523 GTACGAGGCACAAGAGGATGCCACCAGAGCATTGGATGCTTCAAATAACA-GTAAGCTGA 581
|| ||| ||||||| ||||||||||||||| |||||||| ||||| || |||||||||
Sbjct 425 ATATGAGTCACAAGAAGATGCCACCAGAGCACTGGATGCTACAAATT-CAAGTAAGCTGA 483
Query 582 TGGATAAGGTGATCTCGGTGGAGTATGCTGTGAAGGATGATGATGCTAGAGGAAATGGAC 641
|||||||||||||||| ||||||||||| ||||| ||||||||| | |||||||||||
Sbjct 484 TGGATAAGGTGATCTCAGTGGAGTATGCAGTGAAAGATGATGATTCGAGAGGAAATGGGT 543
Query 642 ACAGTCCTGAAAGACGCCGTGATAGGTCACCTGAAAGGAGAAGGCGATCACCTAGTCCTT 701
|||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 544 ACAGTCCTGAAAGACGGCGTGATAGGTCACCTGATAGGAGAAGGCGGTCACCTAGTCCTT 603
Query 702 ACAAAAGAGAAAGAGGAAGCCCTGATTATGGCCGAGGAGCTAGTCCTGTTGCTGCCTACA 761
||| |||||||||||| || ||||| |||||||||||||||||||| || ||| | |||
Sbjct 604 ACAGAAGAGAAAGAGGCAGTCCTGACTATGGCCGAGGAGCTAGTCCAGTAGCT-C--ACA 660
Query 762 GAAAGG-AAAGGACCAGTCCTGACTATGGTCGA--A-GACGTAGCCCAAGTCCTTACAAG 817
||||| ||||||| |||||||| ||||||||| | |||| ||||| || |||||||||
Sbjct 661 -AAAGGGAAAGGACTAGTCCTGATTATGGTCGAGGACGACGCAGCCCCAGCCCTTACAAG 719
Query 818 A 818
|
Sbjct 720 A 720
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50970340029
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5