BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G25570.1 Length=1026 Score E Sequences producing significant alignments: (Bits) Value Ahg329112 jgi|Araly1|329112|fgenesh1_pm.C_scaffold_7001339 739 0.0 Ahg918995 jgi|Araly1|918995|scaffold_100276.1 121 1e-26 > Ahg329112 jgi|Araly1|329112|fgenesh1_pm.C_scaffold_7001339 Length=735 Score = 739 bits (400), Expect = 0.0 Identities = 450/474 (95%), Gaps = 4/474 (1%) Strand=Plus/Plus Query 299 CCATCATAAGTTACAAATCGCTTCCGCTGGAGAAACCAGTGAAGAAGTTGATCCACCTTA 358 |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 225 CCATTATAAGTTACAAATCGCTTCCGTTGGAGAAACCAGTGAAGAAGTTGATCCACCTTA 284 Query 359 TACTCCATGCCATTGCTCTGGCTCTTGGGATATTTGGCATCTGTGCAGCCTTTAAGAACC 418 ||||||| ||||||||||||||||||||||| || ||||||||||||||||| ||||||| Sbjct 285 TACTCCA-GCCATTGCTCTGGCTCTTGGGATCTTCGGCATCTGTGCAGCCTTCAAGAACC 343 Query 419 ACAATGAAAGC-CATATCCCTAATCTCTACAGTCTCCATTCCTGGATTGGTATTGGAGTC 477 ||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 344 ACAATGAAAGCGGA-ATCCCTAATCTCTACAGTCTCCATTCTTGGATTGGTATTGGAGTC 402 Query 478 ATTTCTCTTTATGGCTTCCAGTGGGTGTACAGCTTCATAGTGTTCTTCTTCCCAGGAGGA 537 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 403 ATTTCCCTTTATGGCTTCCAGTGGGTGTACAGCTTCATAGTGTTCTTCTTCCCAGGAGGA 462 Query 538 TCAACAAATTTGAAAAGCGGATTGCTTCCGTGGCACGCAATGCTTGGCCTGTTTGTTTAC 597 ||||||||| ||| ||||||||||||||||||||| |||||||| ||||| ||||||||| Sbjct 463 TCAACAAATCTGAGAAGCGGATTGCTTCCGTGGCATGCAATGCTCGGCCTATTTGTTTAC 522 Query 598 ATACTTGCTGTCGGGAATGCAGCTTTAGGGTTTCTGGAAAAGCTGACTTTCTTGGAGAAT 657 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 523 ATACTTGCTGTTGGGAATGCAGCTTTAGGGTTTCTGGAAAAGCTGACTTTCTTGGAAAAT 582 Query 658 GGAGGGCTTGACAAGTATGGATCCGAAGCATTTCTTATCAACTTCACGGCCATTATCACT 717 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 583 GGAGGGCTTGACAAGTATGGATCCGAGGCATTTCTTATCAACTTCACGGCCATTATCACT 642 Query 718 ATTCTCTTTGGTGCCTTTGTGGTACTCACTGCTTCTGCTGAGTCTCCTTC-TCC 770 |||||||||| | |||||||||||||||||||||||||| ||||||| || ||| Sbjct 643 ATTCTCTTTGCTACCTTTGTGGTACTCACTGCTTCTGCTAAGTCTCCCTCCTCC 696 Score = 318 bits (172), Expect = 4e-86 Identities = 186/193 (96%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 106 ATGGCTGTCCGGATAAACGCGATGGCGGTGACGTTTGTGGCGCACGCGCTGGCGGTAATA 165 ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGCTGTCGGGATAAACGCGCTGGCGGTGACGTTTGTGGCGCACGCGCTGGCGGTAATC 60 Query 166 GCGGCGATTATGGTACTGGTTTGGAGTATCAGTTACAGAGGTGGATTGGCCTGGGAAGCT 225 || ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 61 GCAGCGATTATGGTGCTGGTTTGGAGTATCAGTTACAGAGGTGGATTGGCTTGGGAAGCT 120 Query 226 ACTAACAAGAATCTCATCTTCAATCTGCATCCTGTTCTGATGCTCATCGGATTTATAATC 285 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ACTAACAAAAATCTCATCTTCAATCTGCATCCTGTTCTGATGCTCATCGGATTTATAATC 180 Query 286 TTGGGAGGAGAAG 298 ||||||||||||| Sbjct 181 TTGGGAGGAGAAG 193 > Ahg918995 jgi|Araly1|918995|scaffold_100276.1 Length=491 Score = 121 bits (65), Expect = 1e-26 Identities = 78/84 (93%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 695 TCAACTTCACGGCCATTATCACTATTCTCTTTGGTGCCTTTGTGGTACTCACTGCTTCTG 754 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 408 TCAACTTCACGGCCATTATCACTATTCTCTTTGGTACCTTTGTGGTACTCACTGCTTCTG 467 Query 755 CTGAGTCTCCTTC-T-CCTTCTCC 776 || ||||| |||| | ||| |||| Sbjct 468 CTAAGTCTTCTTCCTTCCTCCTCC 491 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38161039917 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5