BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25640.2
Length=1760
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945524 jgi|Araly1|945524|scaffold_701753.1 2331 0.0
Ahg947559 jgi|Araly1|947559|scaffold_703788.1 147 4e-34
Ahg315021 jgi|Araly1|315021|fgenesh1_pm.C_scaffold_2000054 69.4 8e-11
> Ahg945524 jgi|Araly1|945524|scaffold_701753.1
Length=1512
Score = 2331 bits (1262), Expect = 0.0
Identities = 1413/1487 (95%), Gaps = 5/1487 (0%)
Strand=Plus/Plus
Query 66 GTTAATCATTTTCAGAAGATGGAT-C--CGACGGCGCCGTTGCTTACACACGGTGGCGAA 122
|||||||||||| || |||||||| | ||||||||||||||||||| ||||||||||||
Sbjct 4 GTTAATCATTTTGAGGAGATGGATCCAACGACGGCGCCGTTGCTTACGCACGGTGGCGAA 63
Query 123 GTAGAGGAGGATTATGCTCCGGCGAGGAGCTGGACCGATGTGAAACGAGTCTTATCTACA 182
||||| ||||||||||||||||| |||||||||| |||||| || ||||| || ||||||
Sbjct 64 GTAGAAGAGGATTATGCTCCGGCCAGGAGCTGGATCGATGTCAAGCGAGTTTTGTCTACA 123
Query 183 GAGTCGGCCAAGTTGTGGATGATAGCTGCTCCTGTGGGGTTCAACATCATCTGCCAATAC 242
|||||||||||| ||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 124 GAGTCGGCCAAGATGTGGATGATAGCTGCTCCGGTGGGGTTTAACATCATCTGCCAGTAC 183
Query 243 GGAGTTAGCTCAGTCACTAATATCTTTGTCGGTCACATCGGCGAAGTCGAGCTCTCCGCC 302
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 GGTGTTAGCTCTGTCACTAATATCTTTGTCGGTCACATCGGCGAAGTCGAGCTCTCCGCC 243
Query 303 GTCTCTATCTCTCTTTCCGTCATCGGTACCTTCTCCTTCGGTTTCTTGCTTGGTATGGGA 362
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 244 GTCTCTATCTCTCTCTCCGTCATCGGCACCTTCTCCTTCGGTTTCTTGCTTGGTATGGGA 303
Query 363 AGTGCTCTTGAAACATTATGTGGTCAAGCATATGGAGCTGGTCAAGTCAATATGTTAGGA 422
||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||
Sbjct 304 AGTGCTCTTGAAACACTCTGTGGCCAAGCATATGGAGCTGGTCAAGTCAATATGTTAGGT 363
Query 423 GTTTATATGCAGAGATCTTGGATTATCTTGTTCGTTTCTTGTTTCTTCCTCCTTCCTATT 482
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 364 GTTTATATGCAGAGATCTTGGATTATCTTATTCGTTTCTTGCTTCTTCCTCCTTCCTATT 423
Query 483 TACATCTTTGCCACGCCGGTTCTGAGACTACTCGGTCAAGCAGAGGAGATCGCTGTTCCA 542
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 424 TACATCTTTGCCACGCCAGTTCTGAGACTTCTCGGTCAAGCCGAGGAGATCGCGGTTCCA 483
Query 543 GCTGGACAGTTCACTCTTCTAACCATACCACAGCTCTTCTCACTGGCCTTTAATTTCCCA 602
|||||||| ||||||||||||||||| ||||| ||||||||||| ||||| |||||||||
Sbjct 484 GCTGGACAATTCACTCTTCTAACCATCCCACAACTCTTCTCACTCGCCTTCAATTTCCCA 543
Query 603 ACCTCTAAGTTCCTTCAAGCACAGAGCAAAGTGGTTGCTATTGCTTGGATTGGATTTGTG 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 ACCTCTAAGTTCCTTCAAGCACAGAGCAAAGTGGTTGCTATTGCTTGGATTGGATTTGTG 603
Query 663 GCTCTT-TCCCTTCACGTTATTATGCTCTGGTTGTTTATAATCGAGTTTGGTTGGGGGAC 721
|||||| | ||| |||||||||||||||||| |||||||||||| |||||||||||| ||
Sbjct 604 GCTCTTGT-CCTACACGTTATTATGCTCTGGCTGTTTATAATCGTGTTTGGTTGGGGAAC 662
Query 722 AAATGGTGCTGCTTTGGCGTTTAATATTACAAACTGGGGAACTGCAATTGCTCAAATTGT 781
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 663 AAATGGTGCTGCTTTGGCGTTTAATATTACAAACTGGGGAACAGCAATCGCTCAAATTGT 722
Query 782 TTATGTGATTGGTTGGTGTAATGAAGGCTGGACTGGTTTATCTTGGTTGGCTTTTAAAGA 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 TTATGTGATTGGTTGGTGTAATGAAGGCTGGACTGGTTTATCTTGGTTGGCTTTTAAAGA 782
Query 842 GATTTGGGCTTTCGTTAGACTCTCCATTGCATCTGCTGTTATGCTTTGTCTTGAGATCTG 901
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 783 GATTTGGGCTTTCGTTAGACTCTCCATTGCATCTGCTGTTATGCTTTGTCTTGAAATCTG 842
Query 902 GTATATGATGAGTATCATTGTTCTTACTGGCCGTCTTGACAATGCAGTTATCGCTGTTGA 961
|||||||||||||||||| || ||||||||||| ||||||||||| ||||||||||||||
Sbjct 843 GTATATGATGAGTATCATCGTCCTTACTGGCCGCCTTGACAATGCTGTTATCGCTGTTGA 902
Query 962 TTCCCTTTCTATATGCATGAATATCAACGGCTTGGAGGCTATGTTATTCATCGGAATAAA 1021
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 903 TTCCCTTTCTATATGCATGAATATCAACGGCTTGGAGGCCATGTTGTTCATAGGAATAAA 962
Query 1022 TGCAGCTATAAGTGTCCGTGTATCCAATGAGCTTGGCCTAGGCCGTCCACGAGCAGCTAA 1081
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGCTGCTATCAGTGTCCGTGTATCCAATGAGCTTGGCCTAGGCCGTCCACGAGCAGCTAA 1022
Query 1082 GTACTCTGTCTATGTCACGGTCTTCCAGTCTCTCCTCATTGGTCTTGTCTTTATGGTGGC 1141
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 ATACTCTGTCTATGTCACGGTCTTCCAGTCTCTCCTCATTGGTCTTGTCTTTATGGTGGC 1082
Query 1142 TATCATCATAGCCAGAGACCATTTTGCTATCATCTTCACAAGCAGTAAAGTACTTCAGCG 1201
||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||
Sbjct 1083 TATCATCATAGCCAGAGACCATTTTGCCATCATCTTCACTAGCAGCAAAGTACTTCAACG 1142
Query 1202 TGCAGTGTCTAAGCTAGCTTATCTTCTTGGTATAACCATGGTTCTCAACAGTGTGCAGCC 1261
|||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||
Sbjct 1143 CGCAGTGTCTAAGCTAGCTTATCTTCTGGGAATAACCATGGTTCTAAACAGCGTGCAGCC 1202
Query 1262 GGTTGTTTCTGGTGTGGCTGTTGGAGGCGGTTGGCAAGGCTTAGTGGCCTATATCAACTT 1321
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1203 GGTTGTTTCGGGTGTGGCTGTTGGAGGCGGTTGGCAAGGCTTAGTGGCTTATATCAACTT 1262
Query 1322 GGGCTGTTACTACATTTTTGGCCTTCCCTTTGGATATCTTCTTGGTTACATTGCAAACTT 1381
||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1263 GGGTTGTTACTACATTTTCGGCCTTCCCTTTGGATATCTTCTTGGTTACAAAGCAAACTT 1322
Query 1382 TGGAGTGATGGGACTTTGGTCTGGAATGATAGCCGGGACAGCGCTTCAAACGTTGTTACT 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 TGGAGTGATGGGACTTTGGTCTGGAATGATAGCCGGGACAGCGCTTCAAACGTTGTTACT 1382
Query 1442 GTTGATTGTTCTGTATAAGACAAACTGGAATAAAGAGGTGGAGGAGACGATGGAACGTAT 1501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1383 GTTGATTGTTCTGTATAAGACAAACTGGAATAAAGAGGTGGAGGAGACGATGGAACGAAT 1442
Query 1502 GAAGAAATGGGGAGGGAGTGAGACGACATCCAAGGATATACTTGCGT 1548
|||||||||||||||||||||||||||||| |||||| || ||||||
Sbjct 1443 GAAGAAATGGGGAGGGAGTGAGACGACATCAAAGGATGTAATTGCGT 1489
> Ahg947559 jgi|Araly1|947559|scaffold_703788.1
Length=205
Score = 147 bits (79), Expect = 4e-34
Identities = 83/85 (98%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 1547 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGCG 1606
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 15 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTAAGAGGGCG 74
Query 1607 TGGGTTCAAACCCCACTTCTGACAT 1631
|||||||||||||||||| ||||||
Sbjct 75 TGGGTTCAAACCCCACTTTTGACAT 99
> Ahg315021 jgi|Araly1|315021|fgenesh1_pm.C_scaffold_2000054
Length=324
Score = 69.4 bits (37), Expect = 8e-11
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1553 ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 1589
|||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTG 37
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66048484830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5