BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25650.2
Length=1844
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492262 jgi|Araly1|492262|fgenesh2_kg.7__1695__AT4G25650.1 1437 0.0
> Ahg492262 jgi|Araly1|492262|fgenesh2_kg.7__1695__AT4G25650.1
Length=1713
Score = 1437 bits (778), Expect = 0.0
Identities = 881/930 (95%), Gaps = 10/930 (1%)
Strand=Plus/Plus
Query 916 GAGAAGGGGGGAAACCACTCGAAATCAACGTTAAAAAACTAGACAACAAAGGGTTCTTTT 975
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 793 GAGAAGGGGGGAAACCACTCGAAATTAACGTTAAAAAACTAGACAGCAAAGGGTTCTTTT 852
Query 976 CAAAACAAGAATGGGGTTATTCTAATTTTATTGCACCATGTGTGTATCGCTCTTCCACAG 1035
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 853 CAAAACAAGAATGGGGTTATTCTAATTTTATTGCACCATGTGTTTATCGGTCTTCCACAG 912
Query 1036 ACCCTCTACCAGAGCAGGAACATGAGTATCCCGCACCAGCTGCTTCTGACAAGGCGGCAT 1095
|||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 913 ACCCTCTACCAGAGCAGGAACACGAGTATCCCGCACCAGCTGCGTCTGAGAAGGCGGCAT 972
Query 1096 TGTCAAAGCGGAGATTGTCTTTGATCTTTATATGTATTCCGGTCAGTCCAGGTCGTAGTA 1155
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 973 TGTCAAAGCGCAGATTGTCTTTGATCTTTATATGTATTCCGGTCAGCCCAGGTCGCAGTA 1032
Query 1156 GGCTGATATGGACGTTCCCGAGGAATTTTGGTGTATTTATTGATAAGATTGTCCCTAGAT 1215
| ||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1033 GACTGATATGGACATTCCCGAGGAATTTTGGTGTATTTATTGATAAGATTGTTCCGAGAT 1092
Query 1216 GGGTGTTTCACATTGGTCAAAATACGATTCTAGACTCAGATTTGCACCTCCTTCATGTAG 1275
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1093 GGGTGTTTCACATTGGTCAAAACACGATTCTAGACTCAGATTTGCACCTCCTTCATGTAG 1152
Query 1276 AGGAGCGGAAGATACTGGAGAGAGGCCCTGAAAACTGGCAAAAAGCTTGCTTTATCCCAA 1335
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1153 AGGAGCGGAAGATACTGGAGAGAGGCCCCAAAAACTGGCAAAAAGCTTGCTTTATCCCAA 1212
Query 1336 CAAAATCAGACGCTAATGTGGTTACATTCAGGAGATGGTTTAACAAGTACAGCGAGGCTC 1395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 CAAAATCAGACGCTAATGTGGTTACATTCAGGAGATGGTTTAACAAGTACAGCGAGGCTC 1272
Query 1396 GAGTCGATTGGAGAGGAAAGTTTGATCCATTTCTTCTTCCTCCTACGCCTCCCCGAGAAC 1455
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1273 AAGTCGATTGGAGAGGAAAGTTTGATCCATCTCTTCTTCCTCCTACACCTCCCCGAGAAC 1332
Query 1456 AGCTCTTCGACAGGTATTGGTCGCATGTTGAGAACTGCAGCAGCTGCAAGAAAGCTCACA 1515
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1333 AGCTCTTCGACAGGTATTGGTCACATGTTGAGAACTGCAGCAGCTGCAAGAAAGCTCACA 1392
Query 1516 AATATCTCAATGCGCTAGAGGTGATCTTACAAATCGCATCCGTTGCTATGATCGGAGTCA 1575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 AATATCTCAATGCGCTAGAGGTGATCTTACAAATCGCATCCGTTGCTATGATCGGAGTCA 1452
Query 1576 TGGCGGTGTTGAAGCAAACGACAATGTCGAATGTGGCTAGAATTGCAGTGCTTGTGGCGG 1635
|||| ||| |||||||| | |||| |||||||||||||||||||||||||||||||||||
Sbjct 1453 TGGCCGTGATGAAGCAAGCCACAACGTCGAATGTGGCTAGAATTGCAGTGCTTGTGGCGG 1512
Query 1636 CTGTTTTAAGTTTTGCAGCTTCAAAGTGGCTATCACACTTCATCTACAAGACATTCCATT 1695
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1513 CTGTTTTAAGTTTTGCCGCTTCAAAGTTGCTATCACACTTCATCTACAAGACATTCCATT 1572
Query 1696 ACCATGACTACAACCATGCTGTTGTTTGAAATGTATATTGGTGTTTGTACTTCGTATATA 1755
||||||||||||| |||||| |||||||||||| ||||||||||| ||| | |||||
Sbjct 1573 ACCATGACTACAATCATGCTCTTGTTTGAAATGAATATTGGTGTTCGTA-T----ATATA 1627
Query 1756 TACTCATCGGATGTATTCAGTCCACATGGTGTTGTACATAACAGTTATACAGAA-ACTAA 1814
||||| | |||| ||||||||| ||||||||| |||||||| ||||||| || |||||
Sbjct 1628 TACTCTTTGGATATATTCAGTCTACATGGTGT---ACATAACACTTATACA-AACACTAA 1683
Query 1815 TTCTTGAATCTATACCGTTTACTAACATTC 1844
|||||| |||||||||||||||||| ||||
Sbjct 1684 TTCTTGTATCTATACCGTTTACTAATATTC 1713
Score = 1201 bits (650), Expect = 0.0
Identities = 759/809 (94%), Gaps = 17/809 (2%)
Strand=Plus/Plus
Query 10 CTTCGTCTCTCCGGTTGTTACCACCACACAACGCCATGGAAGCTGCTCTTGCTGCATGCG 69
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTCTTCTCTCCGGTTGTCACCACCACACAACGCCATGGAAGCTGCTCTTGCTGCATGCG 60
Query 70 CTCTTCCATCGCTCCGAATTCTCAATACGAAACCTCGTTTCAGATGTTCCTTCTCCAATC 129
||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||
Sbjct 61 CTCTTCCATCGCTCCGAATTCTCAAAACGAAACCAAGATTCAGATGTTCCTTCTCCAATC 120
Query 130 CAAGCCTACCCATTTCTCCTAATTCCCTTATCACCCGCAAATCAAGTCGATTCACAACCG 189
|||| |||||||||||||| || |||||||||| | ||||| ||||||||||||||||||
Sbjct 121 CAAGACTACCCATTTCTCCAAACTCCCTTATCATCGGCAAACCAAGTCGATTCACAACCG 180
Query 190 CAGTATCATCACCACCATCATCATCAGCCGCTACGTCAACGAATTCTCCACCGGAACCTG 249
|||||||||||||| | |||||||| | | || | ||| | | ||||| |||
Sbjct 181 CAGTATCATCACCA--A-CATCATCA-AC-C-AC-T--ACG-----T-CGCCGGAGTCTG 225
Query 250 AAG-CCCTATTCGAACCCGGGTCGGATAAGTTCGATTGGTACGCTAATTGGTACCCAGTG 308
|| ||| ||||||| |||||||||||||||||||||||||||| |||||||| || |||
Sbjct 226 -AGACCCGATTCGAATCCGGGTCGGATAAGTTCGATTGGTACGCGAATTGGTATCCGGTG 284
Query 309 ATGCCAATTTGCGATCTTGACAAGAAGGTTCCTCATGGGAAGAAAGTTATGGGGATTGAT 368
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 285 ATGCCAATTTGCGATCTTGACAAGAAGGTTCCACATGGGAAGAAAGTTATGGGGATTGAT 344
Query 369 TTGGTTGTTTGGTGGGATAGGAACGAGAAGCAATGGAAAGTGATGGATGACACGTGTCCT 428
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 345 TTGGTGGTTTGGTGGGATAGGAACGACAAGCAATGGAAAGTGATGGATGACACGTGTCCT 404
Query 429 CATCGTCTTGCTCCTTTGTCTGATGGAAGGATTGATCAATGGGGGAGGTTGCAATGTGTT 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 CATCGTCTTGCTCCTTTGTCTGATGGAAGGATTGATCAATGGGGGAGGTTGCAATGTGTT 464
Query 489 TATCATGGATGGTGCTTTAATGGTTCCGGTGACTGTAAACTCATTCCTCAAGCTCCTCCT 548
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 465 TATCATGGATGGTGCTTTAATGGATCCGGTGACTGTAAACTCATTCCTCAAGCTCCTCCT 524
Query 549 GATGGTCCTCCGGTCCACACTTTCAAGCAAGCTTGTGTAGCTGTTTACCCGAGTACTGTG 608
||||| ||||||||||||||||||| ||||||||||||||||||||| || |||||||||
Sbjct 525 GATGGACCTCCGGTCCACACTTTCAGGCAAGCTTGTGTAGCTGTTTATCCAAGTACTGTG 584
Query 609 CAGCATGAGATCATTTGGTTTTGGCCAAACAGTGATCCAAAGTACAAAAACATTATTGAA 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 CAGCATGAGATCATTTGGTTTTGGCCAAACAGTGATCCAAAGTACAAAAACATTATTGAA 644
Query 669 ACCAACAAGCCTCCTTACATTCCAGAGTTAGAAGACCCATCATTCACTAAGTTGATGGGG 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 ACCAACAAGCCTCCTTACATTCCAGAGTTAGAAGACCCATCATTCACTAAGTTGATGGGG 704
Query 729 AATCGTGATATTCCTTACGGGTACGATGTCTTGGTGGAAAACCTCATGGACCCGGCTCAT 788
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 705 AATCGCGATATTCCTTACGGGTATGATGTCTTGGTGGAAAACCTCATGGACCCGGCTCAT 764
Query 789 GTTCCTTATGCACATTATGGACTGATGCG 817
||||| ||||||||||||||||| |||||
Sbjct 765 GTTCCCTATGCACATTATGGACTAATGCG 793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69248065410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5