BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G25800.1
Length=2180
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492240 jgi|Araly1|492240|fgenesh2_kg.7__1673__AT4G25800.2 2937 0.0
> Ahg492240 jgi|Araly1|492240|fgenesh2_kg.7__1673__AT4G25800.2
Length=2111
Score = 2937 bits (1590), Expect = 0.0
Identities = 1962/2136 (92%), Gaps = 47/2136 (2%)
Strand=Plus/Plus
Query 47 ACCAAACAAAACAGAGAATCGC-AGAGCAAACTATAGACTACACAAAACACTTCCGTCAC 105
|||||||||||||||||||| | ||||||||||||||||||| |||| |||||||||| |
Sbjct 1 ACCAAACAAAACAGAGAATC-CAAGAGCAAACTATAGACTACTCAAACCACTTCCGTCGC 59
Query 106 CGGCGAATTTACTCAGGCGGTAATCTCACCGGACATATCTCAGAAAAGAGGG--tttttt 163
|||| ||||||||||||||| | | | | || |||||||||| |||| ||||||
Sbjct 60 CGGCCAATTTACTCAGGCGG-CGT-T---C-G-CAGATCTCAGAAATTAGGGTTTTTTTT 112
Query 164 t--ATTTTCTGGAGGTAATAAT-ATTATGAAGAGGAATTTCGAGAGG-AACGATGACGAC 219
| ||| ||| ||||||| ||| | ||||||||||| || ||| || |||| |||||||
Sbjct 113 TAAATTGTCTAGAGGTAACAATCA-CATGAAGAGGAACTTAGAG-GGCAACGGTGACGAC 170
Query 220 AAGCCTGAGCGAAAGCGTCCTGCTCTTGCTAGTGTGATTGTTGAGGCTCTGAAAGTTGAC 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 AAGCCTGAGCGAAAGCGTCCTGCTCTTGCTAGTGTGATTGTTGAGGCTCTGAAAGTTGAC 230
Query 280 AGTTTGCAGAAGCTTTGCTCGTCTTTGGAACCTATCCTCCGCCGAGTTGTTAGTGAGGAG 339
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 231 AGTTTGCAGAAGCTTTGCTCGTCTTTGGAACCTATCCTCCGTCGAGTTGTTAGTGAGGAA 290
Query 340 GTGGAACGGGCTTTAGCAAAATTAGTCCCTACTAGGCTTACTACAAGTTCTGTATTTTCT 399
|||||||| ||||| |||||||||| |||| ||||||||| | ||||||||| | ||||
Sbjct 291 GTGGAACGTGCTTTGGCAAAATTAGCCCCTGCTAGGCTTATTGCAAGTTCTGGGTCTTCT 350
Query 400 CCGAAACGAATTGGAGGTCCAGATGGCCGGAACTTGCAGCTGCATTTCAAGTCTAGATTA 459
|| ||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 351 CCAAAACGAATTCGAGGTCTAGATGGCCGGAACTTGCAGCTGCATTTCAAGTCTAGGTTA 410
Query 460 TCTCTCCCTTTATTCACTGGAGGAAGAGTGGAAGGAGAGCAAGGTGCTACTATCCATGTT 519
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 411 TCTCTCCCTTTATTCACTGGAGGAAGAGTGGAAGGAGAGCAAGGTGCTGCTATCCATGTT 470
Query 520 GTATTGATTGATGCAAACACGGGTCGTCCTGTAACAGTTGGACCAGAAGCTTCCCTGAAG 579
|||||||||||||||||||| | |||||| |||||||||||||| ||||||||||||||
Sbjct 471 GTATTGATTGATGCAAACACTCGCCGTCCTCTAACAGTTGGACCACAAGCTTCCCTGAAG 530
Query 580 CTTGAGGTTGTTGTTCTTGGGGGTGACTTTAACAATGAAGATGATGAAGATTGGACCCAG 639
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 531 CTTGAGGTTGTTGTGCTCGGGGGTGACTTTAACAATGAAGATGATGAAGATTGGACCCAT 590
Query 640 GAAGAGTTTGAAAGTCATGTTGTAAAAGAGCGTGAAGGAAAGAGACCTTTGCTTACTGGA 699
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 591 GAAGAATTTGAAAGTCATGTTGTAAAAGAGCGTGAAGGAAAGAGACCTTTGCTTACCGGA 650
Query 700 GACTTGTTTGTTGTTCTCAAGGAAGGGGTAGGCACTTTGGGTGAGATTGTTTTCACGGAT 759
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 GATTTGTTTGTTGTTCTCAAGGAAGGGGTAGGCACTTTGGGTGAGATTGTTTTCACGGAT 710
Query 760 AATTCGAGTTGGATTAGAAGTCGCAAGTTCAGGCTTGGTTTGAGGGTACCCTCTGGGTAC 819
|||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 711 AATTCGAGCTGGATTCGAAGTCGCAAGTTCAGGCTTGGTTTAAGGGTACCCTCTGGGGAC 770
Query 820 TGTGATGGCATACGTATACGTGAAGCAAAAACAGAAGCTTTCTCTGTTAAAGATCACAGG 879
|||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 771 TGTGATGGCATACGCATACGTGAAGCAAAGACTGAAGCTTTCTCTGTTAAAGATCACAGG 830
Query 880 GGCGAATTGTACAAGAAGCATTATCCACCTGCTTTGAATGATGAGGTGTGGAGGTTAGAG 939
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 831 GGCGAATTGTACAAGAAGCATTATCCACCTGCTTTGAATGATGAGGTGTGGAGGTTGGAG 890
Query 940 AAGATTGGTAAAGATGGGGCGTTTCATAAGAGGCTAACCGCTGCAGGAATAGTCACTGTG 999
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 891 AAGATTGGTAAAGATGGGGCGTTCCATAAGAGGCTAACCGCTGCAGGAATAGTCACTGTG 950
Query 1000 GAAGGCTTTCTGAGACAATTGGTCAGAGATTCTACAAAATTACGGGCTATTCTTGGAAGT 1059
||||||||||||||| |||||||||| |||||| ||||| |||| |||||||||||||||
Sbjct 951 GAAGGCTTTCTGAGAAAATTGGTCAGGGATTCTGCAAAACTACGAGCTATTCTTGGAAGT 1010
Query 1060 GGCATGTCAAATAAGATGTGGGATTTGCTAGTGGAGCATGCAAAAACATGTGTCCTAAGC 1119
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1011 GGCATGTCAAATAAGATGTGGGAATTGCTAGTGGAGCACGCAAAAACATGTGTCCTAAGC 1070
Query 1120 GGTAAGCTTTATATCTACTATACTGAAGATTCAAGGTCTGTTGGCGTTGTATTCAATAAC 1179
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1071 GGTAAGCTTTATATCTACTATACTGAAGATTCAAGGAATGTTGGCGTTGTGTTCAATAAC 1130
Query 1180 ATCTACGAGTTAAGTGGCCTCATAACTGAAGACCAATACTTATCTGCTGATTCACTCTCT 1239
||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||
Sbjct 1131 ATCTACGAGTTAAGTGGCCTCATTTCTGGAGACCAATACATATCTGCTGATTCACTCTCT 1190
Query 1240 GAAAGCCAAAAGGTATATGTGGATGGACTGGTGAAGAAAGCGTATGAAAATTGGAACCAG 1299
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1191 GAAAGCCAAAAGGTATATGTGGATGGACTGGTGAAGAAAGCATATGGAAATTGGAACCAG 1250
Query 1300 GTCGTGGAGTATGAAGGCGAATCTCTTTTAAACTTAAACCAGCCTGAGAGGTTGGATATT 1359
|||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||
Sbjct 1251 GTCGTGGAGTATGAAGGCAAATCTCTTTTAAATTTCAACCAGCCTGAGAGGTTGGATATT 1310
Query 1360 TCTCAGACTGATCCTGTAACAGCTCTGGCAAGTTACTCTACGGTGCCTCTTAGTCAGTTT 1419
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1311 TCTCAGACTGATCCTGTAACAGCTCTGGCAAGTTACTCTACCGTGCCTCTTAGTCAGTTT 1370
Query 1420 CCTGAATTCGCTATAGAAGGGTATAATCAAACGCTGACAACAGCCCTA-CCTCATAACCC 1478
||||||||||| || ||||| ||||||||||||||| ||||| ||| | |||||||||||
Sbjct 1371 CCTGAATTCGCAATTGAAGGCTATAATCAAACGCTGGCAACATCCC-AGCCTCATAACCC 1429
Query 1479 ACAAGCACAATTTGATTTTGTTCCCCAGCAAGATCAGTTTATCGGAATACAGCAACCTCA 1538
|||||||||||| ||||||||| | ||||||||||||||||| ||||| |||||||| ||
Sbjct 1430 ACAAGCACAATTCGATTTTGTTTCGCAGCAAGATCAGTTTATGGGAATGCAGCAACCGCA 1489
Query 1539 AACTCAAACCAAC-ATAGAGAATGAAAATGTAACTAGGTTGGTTCTTGGTCCTCCACAAT 1597
|| |||| || || ||||||||||||||||||||| |||||||||||||||||||| | |
Sbjct 1490 AAGTCAA-CCTACCATAGAGAATGAAAATGTAACTGGGTTGGTTCTTGGTCCTCCATATT 1548
Query 1598 CATCCACAGGTGGGTACCAAGACATCAAATCTTCTGCTGACCAGGAAAATCTTAATCCTT 1657
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1549 CATCCACAGGTGGGTACCAAGACATCAAATCATCTGTTGACCAGGAAAATCTTAATCCTT 1608
Query 1658 TCGAAGACTGGACAAACCT-AAGTGAGAATGACTTTTTCTCGGAGGAAGAGATCCGGCAA 1716
|||||||||||| ||||| || |||||| ||||| ||| | ||||||||||||||||||
Sbjct 1609 TCGAAGACTGGATAAACCCCAA-TGAGAACGACTTATTCGCAGAGGAAGAGATCCGGCAA 1667
Query 1717 ACAAGCCATGACT-TGTTAGCGAATGAGGACATGCAACAG-TT-----GCTCTTCAGCAT 1769
| ||||||||| | |||||||||||||||||||||||||| || |||||| |||||
Sbjct 1668 AGAAGCCATGA-TATGTTAGCGAATGAGGACATGCAACAGCTTCTCCAGCTCTTTAGCAT 1726
Query 1770 GGGAGGTGGCAAAGGAGAAGATGGTTTTACTTTCCCATCGTTTATGCAGAATACACCAAT 1829
|||||||||||| || |||||||| ||| |||||||||||||| |||| |||||||||||
Sbjct 1727 GGGAGGTGGCAATGGGGAAGATGGGTTTGCTTTCCCATCGTTTTTGCATAATACACCAAT 1786
Query 1830 GATGCAGGGATATGATGAGGAGGGCCGTGGGCGATCAGGAAAAGCGGTTGTTGGATGGCT 1889
||||||||||||| |||| |||| |||||||||||||||||||||||||||||| |||||
Sbjct 1787 GATGCAGGGATATAATGATGAGGACCGTGGGCGATCAGGAAAAGCGGTTGTTGGGTGGCT 1846
Query 1890 GAAGGTAAAAGCTGCTATGAGATGGGGATTCTTCATAAGGAGGAAAGCTGCTGAGAGGAG 1949
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1847 GAAGATAAAAGCTGCTATGAGATGGGGATTCTTCATAAGGAGGAAAGCTGCTGAGAGAAG 1906
Query 1950 AGCACAGATTGTGGAGCTTCATGATAATAACGATGGTAAATGAATAGTCAGGTTGCTTGC 2009
||||||||||||||||||| ||||| |||| || |||||||||||||||||||
Sbjct 1907 AGCACAGATTGTGGAGCTTGATGAT------GATG--AA-TGAATAGTCAGGTTGCTTGA 1957
Query 2010 TAGTGTATAGAAGCCATGTACAGTTTAGGGATGTATAACAACATCACTTACCGATATG-G 2068
||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||| |
Sbjct 1958 TAGTGTATAGAAGCCCTGTACAGTATAGGGATGTATAGCAACATCACTTACCGATATTCG 2017
Query 2069 -ATTTGCTTGATTTAGCTTATTAGACAAGAATATAATCGATGAACCAT--GAGAAATT-T 2124
|| | | | | ||| |||||||||| || |||||||||||||||| |||||| |
Sbjct 2018 CATC-G-TCGCTATAGTTTATTAGACAGGAGGATAATCGATGAACCATATGAGAAAAAAT 2075
Query 2125 GAAGACTAACCTTCAGCAGCAAGACAAGAAGCTGAT 2160
|||||||||||||||||||| |||||||||||||||
Sbjct 2076 GAAGACTAACCTTCAGCAGCTAGACAAGAAGCTGAT 2111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82046387730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5