BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G25850.1 Length=1639 Score E Sequences producing significant alignments: (Bits) Value Ahg329088 jgi|Araly1|329088|fgenesh1_pm.C_scaffold_7001315 1801 0.0 Ahg889567 jgi|Araly1|889567|Al_scaffold_0007_1553 1594 0.0 > Ahg329088 jgi|Araly1|329088|fgenesh1_pm.C_scaffold_7001315 Length=1188 Score = 1801 bits (975), Expect = 0.0 Identities = 1120/1191 (94%), Gaps = 6/1191 (1%) Strand=Plus/Plus Query 227 ATGAGAAAGCACCTTGTGCTGGCCAAACCTTTTTCGTTGGAAGATGAAAAAGATTCTGAA 286 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1 ATGAGAAAGCACCTTGTGCTGGCCAAACCTTTTTCATTGGAAGATGAAAAAGATTCTGAG 60 Query 287 CACACTGCTTCGAATGTCATCCGCAAGATCCTCAGCCTCTTTAAGACCGTACGCCCAGGA 346 ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 61 CACACAGCTTCGAATGTCATCCGCAAGATCCTCAGCCTCTTCAAGACCGTACGTCCAGGA 120 Query 347 TCTGATCTCACCAATTTTCAGCTGCCACCTCAGCTGAACCTACCAAGATCACAACTCCAA 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCTGATCTCACCAATTTTCAGCTGCCACCTCAGCTGAACCTACCAAGATCACAACTCCAA 180 Query 407 TGTTACGGCGAGATGGTCTACAGCTTCGTCGGTCAGGATCTGCTTGGGGAATGCAGCCGC 466 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct 181 TGTTACGGCGAGATGGTCTACAGCTTCGGCGGTCAGGATCTGCTTGGGGAATGCAACCGC 240 Query 467 CGTGATCTTCCCATTGAACGGCTCAAATCAGTGGTGACGTGGAACATCTCCACACTCCGT 526 ||||||||||||||||||||| | ||||| |||||||||||||| || |||||||||||| Sbjct 241 CGTGATCTTCCCATTGAACGGTTTAAATCGGTGGTGACGTGGAATATATCCACACTCCGT 300 Query 527 CCGGTGGTCTTTGGCATGTCTCCGTACAACTCCGTTCTCGGCGAGACTCACCACGTATCG 586 ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 301 CCGCTGGTCTTTGGCATGTCTCCGTACAACTCCGTTCTCGGCGAGACACACCACGTCTCC 360 Query 587 AACGGTCACATCAACGTCATCGCCGAACAAGTAGTGCATCATCCTCCGGTTTCCGCTCTT 646 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 361 AACGGTCACATCAACGTCATCGCCGAACAAGTAGTGCATCATCCTCCGGTGTCCGCACTT 420 Query 647 CATGCGACTCACGAACAAGAAAATATCGACGTGACATGGTGTCAATATTTCACTCCTAAA 706 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 421 CATGCGACTCACGAACAAGAAAATATCGATGTGACATGGTGTCAATATTTCACTCCTAAA 480 Query 707 TTTCGTGGTACTCACGTGGACGTTGAGGTAAAGGGTAAAAGGGTAATGAAGCTTCTGAAT 766 |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 481 TTTCGTGGTACTTACGTGGACGTTGAGGTAAAGGGTAAAAGAGTAATGAAGCTTCTGAAT 540 Query 767 CATATAGAGACTTATGAGATGGACCAACCGAGACTAATAATGAGATTCTTACCGGCGCCG 826 | || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 541 CGTAAAGAGACTTATGAGATGGACCAACCGAGACTAATCATGAGATTCTTACCGGCGCCG 600 Query 827 GGAGCTTACTGGGCCGGAAAAGTGAAAATAAAGTGTCCGGAGACTGATCTCGAAGCTGAG 886 |||||| |||||||||||||||| || |||||||||||||||||| |||||||||||||| Sbjct 601 GGAGCTCACTGGGCCGGAAAAGTCAAGATAAAGTGTCCGGAGACTAATCTCGAAGCTGAG 660 Query 887 TTACATTTGATCTCCGATTCATTCATTGAAAGATTCAGAGGCAACAACAACAGATCAATA 946 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 661 TTACATTTGATCTCCGATTCCTTCATTGAAAGATTCAGAGGCAACAACAACAGATCACTT 720 Query 947 AAAGGAAAGATCTTTGAATCTTCCTCTGGTAATCAGCTCTACAACATTTTTGGCCATTGG 1006 ||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||| Sbjct 721 AAAGGAAAGATCTTTGAATCTTCCTCTGGTAATCAGCTCTATAACATCTATGGCCATTGG 780 Query 1007 GACAGAACGGTAATGGCGAAAAATATAAAGACTGGTGAGCTCGAGGTCATTTACAATGCC 1066 ||||||||||||||||| |||||| | |||||||||||| ||||||| || ||||||||| Sbjct 781 GACAGAACGGTAATGGCAAAAAATCTGAAGACTGGTGAGGTCGAGGTTATCTACAATGCC 840 Query 1067 AAGGAGAATATCACAGGACTCAAACCTCCAACAGTCAAGAACCTGGAGGAGGTAACGGAG 1126 |||||||||||||||||||||||||||||||| |||||||| ||| ||||||||| |||| Sbjct 841 AAGGAGAATATCACAGGACTCAAACCTCCAACTGTCAAGAATCTGCAGGAGGTAATGGAG 900 Query 1127 AGCGAGTCGACAATGGTGTGGAGTGAAGTAAGTGAAG-GAATACTGAAGAAAGATTGGGA 1185 |||||||| || ||||||||||||||||||||||| | | |||||||||||||||||||| Sbjct 901 AGCGAGTCAACGATGGTGTGGAGTGAAGTAAGTGA-GCGTATACTGAAGAAAGATTGGGA 959 Query 1186 AAGAGCAAGAGAAGCTAAGATAGTTGTGGAGGAGAAGCAGAGAGCGTCTTTAAAACAGAG 1245 |||||||||||||||||||||| ||||||||||||||||||||| | || | |||||||| Sbjct 960 AAGAGCAAGAGAAGCTAAGATACTTGTGGAGGAGAAGCAGAGAGAGGCTCTGAAACAGAG 1019 Query 1246 AGAGGCTTCTGGTGAGTCATGGGTTCCCAAACATTTCTTAGTGGTCAA-AGACGGTAAAG 1304 |||| ||||||||||||||||||||||||||||||||| ||||||||| | | ||||||| Sbjct 1020 AGAGACTTCTGGTGAGTCATGGGTTCCCAAACATTTCTCAGTGGTCAATA-AGGGTAAAG 1078 Query 1305 ACTGGGATTGTTCACCGCTACAGCCTACGGTTCCTCCGGCGCCACTCGTCATCACATAGG 1364 ||||||| || |||||||||||||| ||||||||||||| ||||||||| |||||| ||| Sbjct 1079 ACTGGGACTGCTCACCGCTACAGCCCACGGTTCCTCCGGGGCCACTCGTAATCACAGAGG 1138 Query 1365 AGCAAGGACGAA-TCATTCACCGGTTTCAAGATTCCAAAACTCTATGTTGA 1414 ||||||| ||| |||| ||||||||||||||||||| |||||||||||| Sbjct 1139 CGCAAGGA-GAAATCATAAACCGGTTTCAAGATTCCAACACTCTATGTTGA 1188 > Ahg889567 jgi|Araly1|889567|Al_scaffold_0007_1553 Length=1143 Score = 1594 bits (863), Expect = 0.0 Identities = 1050/1140 (92%), Gaps = 14/1140 (1%) Strand=Plus/Plus Query 227 ATGAGAAAGCACCTTGTGCTGGCCAAACCTTTTTCGT-TGGAAGATGAAAAAGATTCTGA 285 ||||||| ||||||||||||||||||||||||||| | |||||||||| ||||||||||| Sbjct 1 ATGAGAAGGCACCTTGTGCTGGCCAAACCTTTTTC-TCTGGAAGATGAGAAAGATTCTGA 59 Query 286 ACACACTGCTTCGAA-TGTCATCCGCAAGATCCTCAGCCTCTTTAAGACCGTACGCCCAG 344 | ||| ||||| || ||||||||||||||||||||| ||| |||||||||||||||||| Sbjct 60 GCTCACAGCTTC-AAGTGTCATCCGCAAGATCCTCAGTCTCATTAAGACCGTACGCCCAG 118 Query 345 GATCTGATCTCACCAATTTTCAGCTGCCACCTCAGCTGAACCTACCAAGATCACAACTCC 404 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 119 GATCTGATCTCACCAATTTTCAGCTGCCACCTCAGCTGATCCTACCAAGATCACGACTCC 178 Query 405 AATGTTACGGCGAGATGGTCTACAGCTTCGTCGGTCAGGATCTGCTTGGGGAATGCAGCC 464 ||||||| ||||||||| |||||||||||| |||||||||||| |||||||||||||||| Sbjct 179 AATGTTATGGCGAGATGATCTACAGCTTCGGCGGTCAGGATCTACTTGGGGAATGCAGCC 238 Query 465 GCCGTGA-TCTTCCCATTGAACGGCTCAAATCAGTGGTGACGTGGAACATCTCCACACTC 523 |||| || ||| || | |||||||||||||| ||||||||||||||||||||||||||| Sbjct 239 GCCG-GAATCTGCCTGTCGAACGGCTCAAATCGGTGGTGACGTGGAACATCTCCACACTC 297 Query 524 CGTCCGGTGGTCTTTGGCATGTCTCCGTACAACTCCGTTCTCGGCGAGACTCACCACGTA 583 ||||| || ||| |||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 298 CGTCCCGTAGTCGTTGGCATGTCTCCGTATAACCCCGTTCTCGGCGAGACTCACCACGTC 357 Query 584 TCGAACGG-TCACATCAACGTCATCGCCGAACAAGTAGTGCATCATCCTCCGGTTTCCGC 642 || ||||| | ||||||||||| || |||||||||||||||||||||||||||| ||||| Sbjct 358 TCCAACGGCT-ACATCAACGTCCTCACCGAACAAGTAGTGCATCATCCTCCGGTGTCCGC 416 Query 643 TCTTCATGCGACTCACGAACAAG-AAAATATCGACGTGACATGGTGTCAATATTTCACTC 701 |||||||| |||||||| ||| |||| || |||||||||||||||||||||||||||| Sbjct 417 ACTTCATGCAACTCACGAG-AAGGAAAAGATTGACGTGACATGGTGTCAATATTTCACTC 475 Query 702 CTAAATTTCGTGGTAC-TCACGTGGACGTTGAGGTAAAGGGTAAAAGGGTAATGAAGCTT 760 |||||||||||||| | | ||||||| ||||||||||| ||||||||||||||||||||| Sbjct 476 CTAAATTTCGTGGTGCGT-ACGTGGATGTTGAGGTAAATGGTAAAAGGGTAATGAAGCTT 534 Query 761 CTGAATCATATAGAGACTTATGAGATGGACCAACCGAGACTAATAATGAGATTCTTACCG 820 ||| ||| || ||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 535 CTGCATCGTAAAGAGACTTATGAGATGGACCAACCGAGACTAATTATGAGATTCTTACCG 594 Query 821 GCGCCGGGAGCTTACTGGGCCGGAAAAGTGAAAATAAAGTGTCCGGAGACTGATCTCGAA 880 |||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 595 GCGCCGGGAGCTCACTGGGCCGGAAAAGTCAAGATAAAGTGTCCGGAGACTGATCTCGAA 654 Query 881 GCTGAGTTACATTTGATCTCCGATTCATTCATTGAAAGATTCAGAGGCAACAACAACAGA 940 |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 655 GCTGAGTTACATTTGATCTCCGATTCCTTCATTGAAAGATTCAGAGGCAACAATAACAGA 714 Query 941 TCAATAAAAGGAAAGATCTTTGAATCTTCCTCTGGTAATCAGCTCTACAACATTTTTGGC 1000 ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| | |||| Sbjct 715 TCAATTAAAGGAAAGATATTTGAATCTTCCTCTGGTAATCAGCTCTATAACATCTATGGC 774 Query 1001 CATTGGGACAGAACGGTAATGGCGAAAAATATAAAGACTGGTGAGCTCGAGGTCATTTAC 1060 ||||||||||||||||||||||| |||||| | |||||||||||| ||||||| || ||| Sbjct 775 CATTGGGACAGAACGGTAATGGCAAAAAATCTGAAGACTGGTGAGGTCGAGGTTATCTAC 834 Query 1061 AATGCCAAGGAGAATATCACAGGACTCAAACCTCCAACAGTCAAGAACCTGGAGGAGGTA 1120 ||||||||||||||||||||||||||||| |||||||| |||||||| ||| |||||||| Sbjct 835 AATGCCAAGGAGAATATCACAGGACTCAATCCTCCAACTGTCAAGAATCTGCAGGAGGTA 894 Query 1121 ACGGAGAGCGAGTCGACAATGGTGTGGAGTGAAGTAAGTGAAG-GAATACTGAAGAAAGA 1179 | ||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||| Sbjct 895 ATGGAGAGCGAGTCGACGATGGTGTGGAGTGAAGTAAGTGA-GCGAATACTGAAGAAAGA 953 Query 1180 TTGGGAAAGAGCAAGAGAAGCTAAGATAGTTGTGGAGGAGAAGCAGAGAGCGTCTTTAAA 1239 |||||||||||||||||||||||||||| ||||||||||||||||||||| | || | || Sbjct 954 TTGGGAAAGAGCAAGAGAAGCTAAGATACTTGTGGAGGAGAAGCAGAGAGAGGCTCTGAA 1013 Query 1240 ACAGAGAGAGGCTTCTGGTGAGTCATGGGTTCCCAAACATTTCTTAGTGGTCAAAGACGG 1299 |||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 1014 ACAGAGAGAGACTTCTGGTGAGTCATGGGTTCCCAAACATTTCTCAGTGGTCAAAAACGG 1073 Query 1300 TAAAGACTGGGATTGTTCACCGCTACAGCCTACGGTTCCTCCGGCGCCACTCGTCATCAC 1359 |||||||||||| || ||||||| |||||| |||||||||| ||| |||||||||||||| Sbjct 1074 TAAAGACTGGGACTGCTCACCGCCACAGCCCACGGTTCCTCGGGCTCCACTCGTCATCAC 1133 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61439565185 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5