BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G25900.1 Length=1337 Score E Sequences producing significant alignments: (Bits) Value Ahg492227 jgi|Araly1|492227|fgenesh2_kg.7__1660__AT4G25900.1 1888 0.0 > Ahg492227 jgi|Araly1|492227|fgenesh2_kg.7__1660__AT4G25900.1 Length=1301 Score = 1888 bits (1022), Expect = 0.0 Identities = 1189/1267 (94%), Gaps = 22/1267 (2%) Strand=Plus/Plus Query 22 TAAGTTTCATTTCCTGTTTTTAGGCTCACTCGTGGACtttttttAATTTCTTTCCTTTGC 81 ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| Sbjct 2 TAAGTTTCATTTCCTGTTTTTAGGCTCACTCGTTGACTTTTTTCAATTTCTTTCCTTTGG 61 Query 82 CATATTTATAAAATAAAAGAGAGAGAAAGAATTTTCAATAATTTTCAACAAGC-----A- 135 |||||||||||||||| | |||||| || ||| |||||||||||||||||||| | Sbjct 62 CATATTTATAAAATAAGA-AGAGAG-AA-AATCTTCAATAATTTTCAACAAGCAAAGGAG 118 Query 136 A-A-G-TTCATGATGGGGAATAAGCGAAATCTCGGATTTGTGATCTTCTTCTGGGCTCTG 192 | | | ||||||||||||||||| ||||||||||||||||||||||||| ||||||||| Sbjct 119 AGACGACTCATGATGGGGAATAAGGGAAATCTCGGATTTGTGATCTTCTTATGGGCTCTG 178 Query 193 GTGGTTGCAGTAGTAGCCACGGCCATCGAGCATCGTCGCAATGAGAGGACTAAAGGCGTC 252 ||||||||||||||||||||||||||||||||||||| || |||||||||||||||| | Sbjct 179 GTGGTTGCAGTAGTAGCCACGGCCATCGAGCATCGTCCCATTGAGAGGACTAAAGGCATT 238 Query 253 AATGGTCTTGACAAGATCATCATCCGCGACCGTCGTGGCCGATCTGCTGAGGTTTACTTG 312 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 239 AATGGTCTTGACAAGATCATCATCCGCGACCGCCGTGGCCGATCTGCTGAGGTTTACTTG 298 Query 313 TATGGAGGTCAAGTCAGTTCTTGGAAAAATGAGAATGGAGAGGAGTTACTTGTTATGAGT 372 |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 299 TATGGAGGTCAAGTGAGTTCTTGGAAGAATGAGAAGGGAGAGGAGTTACTTGTTATGAGT 358 Query 373 AGCAAGGCTATATTCCAGCCTCCAACACCGATTCGTGGAGGAATTCCAGTATTGTTTCCG 432 |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 359 AGCAAGGCTATATTTCAGCCTCCAACACCGATTCGTGGGGGAATTCCAGTATTGTTTCCG 418 Query 433 CAATACAGTAACACCGGTCCACTTCCCTCACATGGATTTGTAAGACAGAGGTTCTGGGAG 492 ||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 419 CAATATAGTAACACCGGTCCACTTCCCTCACATGGATTTGCAAGGCAGAGGTTCTGGGAA 478 Query 493 GTTGAGACTAAACCACCTCCTTTGCCATCACTTTCTACTGCTCATGTTGACCTGATCGTA 552 |||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| || Sbjct 479 GTTGAGGCTAAACCACCTCCTTTGCCATCAATTTCTTCTGCTCATGTTGACCTGATCCTA 538 Query 553 AGATCATCCAATGAGGATTTGAAGATCTGGCCGCATAAGTTTGAGTATAGACTGAGAGTA 612 | |||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 539 AAATCATCCAATGATGATTTGAAGATCTGGCCTCATAAGTTTGAGTACCGACTGAGAGTA 598 Query 613 GCATTGGGACATGATGGAGATTTGACGTTAACATCTCGTGTTAAGAATACTGATACAAAA 672 ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||| Sbjct 599 GCATTGGGACATGATGGAGATTTGACGTTGACATCTCGTGTTAAGAATTCTGATACTAAA 658 Query 673 CCATTTAACTTCACATTTGCTCTTCACCCCTACTTCGCTGTTTCCAATATCAGTGAAATC 732 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct 659 CCATTTAACTTCACATTTGCTCTTCACCCCTATTTCGCTGTTTCCAATATCAGTGAAGTC 718 Query 733 CATGTCGAAGGATTACACAACTTGGATTACCTTGACCAACAAAAGAACAGAACACGTTTC 792 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 719 CACGTCGAAGGATTACACAACTTGGATTATCTTGACCAACAAAAGAACAGAACACGTTTC 778 Query 793 ACTGATCATGAGAAGGTTATAACTTTCAATGCTCAACTTGACAGGTTGTACCTAAGCACT 852 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 ACTGATCATGACAAAGTTATAACTTTCAATGCTCAACTTGACAGGTTGTACCTAAGCACT 838 Query 853 CCAGATCAACTAAGAATCGTGGACCATAAGAAAAAGAAGACTATTGTTGTACACAAGGAG 912 ||| || ||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 839 CCAAATAAACTAAGAATCGTAGACCACAAGAAAAAGAAGACTATTGTTGTACACAAGGAG 898 Query 913 GGACAAGTTGATGCCGTGGTGTGGAATCCATGGGATAAGAAAGTATCCGATTTGGGAGTT 972 ||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||| Sbjct 899 GGACAAGTTGATGCCGTGGTGTGGAATCCATGGGACAAGAAAGTGTCAGATTTGGGAGTT 958 Query 973 GAAGACTATAAGCGTTTTGTAACGGTGGAAAGCGCGGCTGTCGCGAAACCGATCACAGTG 1032 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 959 GAAGACTATAAGCGTTTTGTAACGGTGGAAAGCGCGGCTGTCGAGAAACCGATCACAGTG 1018 Query 1033 AACCCCGGCAAAGAATGGAAAGGAATACTCCATGTTTCTGTGGTTCCATCAAATCGGAAA 1092 |||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||||| Sbjct 1019 AACCCCGGCAAAGAATGGAAAGGAATACTCCAAGTATCTGTGGTTCCTTCAAATTGGAAA 1078 Query 1093 GCTTGACCCTATAAAAGTCTTGCATTCATCATCCTCATCCTTTaaaaaaaaaaaCTTAAA 1152 |||||| |||| ||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 1079 GCTTGAACCTA-AAAAGTCTTGCATTCATCATCCTCATC-TT-AAAAAAAAAAACTTAAA 1135 Query 1153 A-CTGTCTTTATTAAAGTATA--CTTAATGTTCCCGAGAGACATCACATGGTGAACACAA 1209 | |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 1136 AACTGTCTTTATTAAAATATATACTTAATGTTCCCGAGAGACATCACATGGTGAACACAA 1195 Query 1210 AGTTAGTTGGGTTCCAAACTGGACTCTTGACCAGTTTTATTGTTTTGTAACTTTAGCATT 1269 ||||||||||||||||||||||||||| ||||||||| |||||||||||| | || ||| Sbjct 1196 AGTTAGTTGGGTTCCAAACTGGACTCT-GACCAGTTTCATTGTTTTGTAA-T--AGTATT 1251 Query 1270 CATGAAT 1276 ||||||| Sbjct 1252 CATGAAT 1258 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50017267104 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5