BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G25900.1

Length=1337
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg492227 jgi|Araly1|492227|fgenesh2_kg.7__1660__AT4G25900.1        1888    0.0  


> Ahg492227 jgi|Araly1|492227|fgenesh2_kg.7__1660__AT4G25900.1
Length=1301

 Score = 1888 bits (1022),  Expect = 0.0
 Identities = 1189/1267 (94%), Gaps = 22/1267 (2%)
 Strand=Plus/Plus

Query  22    TAAGTTTCATTTCCTGTTTTTAGGCTCACTCGTGGACtttttttAATTTCTTTCCTTTGC  81
             ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| 
Sbjct  2     TAAGTTTCATTTCCTGTTTTTAGGCTCACTCGTTGACTTTTTTCAATTTCTTTCCTTTGG  61

Query  82    CATATTTATAAAATAAAAGAGAGAGAAAGAATTTTCAATAATTTTCAACAAGC-----A-  135
             |||||||||||||||| | |||||| || ||| ||||||||||||||||||||     | 
Sbjct  62    CATATTTATAAAATAAGA-AGAGAG-AA-AATCTTCAATAATTTTCAACAAGCAAAGGAG  118

Query  136   A-A-G-TTCATGATGGGGAATAAGCGAAATCTCGGATTTGTGATCTTCTTCTGGGCTCTG  192
             | | |  ||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct  119   AGACGACTCATGATGGGGAATAAGGGAAATCTCGGATTTGTGATCTTCTTATGGGCTCTG  178

Query  193   GTGGTTGCAGTAGTAGCCACGGCCATCGAGCATCGTCGCAATGAGAGGACTAAAGGCGTC  252
             ||||||||||||||||||||||||||||||||||||| || |||||||||||||||| | 
Sbjct  179   GTGGTTGCAGTAGTAGCCACGGCCATCGAGCATCGTCCCATTGAGAGGACTAAAGGCATT  238

Query  253   AATGGTCTTGACAAGATCATCATCCGCGACCGTCGTGGCCGATCTGCTGAGGTTTACTTG  312
             |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  239   AATGGTCTTGACAAGATCATCATCCGCGACCGCCGTGGCCGATCTGCTGAGGTTTACTTG  298

Query  313   TATGGAGGTCAAGTCAGTTCTTGGAAAAATGAGAATGGAGAGGAGTTACTTGTTATGAGT  372
             |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct  299   TATGGAGGTCAAGTGAGTTCTTGGAAGAATGAGAAGGGAGAGGAGTTACTTGTTATGAGT  358

Query  373   AGCAAGGCTATATTCCAGCCTCCAACACCGATTCGTGGAGGAATTCCAGTATTGTTTCCG  432
             |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  359   AGCAAGGCTATATTTCAGCCTCCAACACCGATTCGTGGGGGAATTCCAGTATTGTTTCCG  418

Query  433   CAATACAGTAACACCGGTCCACTTCCCTCACATGGATTTGTAAGACAGAGGTTCTGGGAG  492
             ||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||| 
Sbjct  419   CAATATAGTAACACCGGTCCACTTCCCTCACATGGATTTGCAAGGCAGAGGTTCTGGGAA  478

Query  493   GTTGAGACTAAACCACCTCCTTTGCCATCACTTTCTACTGCTCATGTTGACCTGATCGTA  552
             |||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct  479   GTTGAGGCTAAACCACCTCCTTTGCCATCAATTTCTTCTGCTCATGTTGACCTGATCCTA  538

Query  553   AGATCATCCAATGAGGATTTGAAGATCTGGCCGCATAAGTTTGAGTATAGACTGAGAGTA  612
             | |||||||||||| ||||||||||||||||| ||||||||||||||  |||||||||||
Sbjct  539   AAATCATCCAATGATGATTTGAAGATCTGGCCTCATAAGTTTGAGTACCGACTGAGAGTA  598

Query  613   GCATTGGGACATGATGGAGATTTGACGTTAACATCTCGTGTTAAGAATACTGATACAAAA  672
             ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||
Sbjct  599   GCATTGGGACATGATGGAGATTTGACGTTGACATCTCGTGTTAAGAATTCTGATACTAAA  658

Query  673   CCATTTAACTTCACATTTGCTCTTCACCCCTACTTCGCTGTTTCCAATATCAGTGAAATC  732
             |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct  659   CCATTTAACTTCACATTTGCTCTTCACCCCTATTTCGCTGTTTCCAATATCAGTGAAGTC  718

Query  733   CATGTCGAAGGATTACACAACTTGGATTACCTTGACCAACAAAAGAACAGAACACGTTTC  792
             || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  719   CACGTCGAAGGATTACACAACTTGGATTATCTTGACCAACAAAAGAACAGAACACGTTTC  778

Query  793   ACTGATCATGAGAAGGTTATAACTTTCAATGCTCAACTTGACAGGTTGTACCTAAGCACT  852
             ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  779   ACTGATCATGACAAAGTTATAACTTTCAATGCTCAACTTGACAGGTTGTACCTAAGCACT  838

Query  853   CCAGATCAACTAAGAATCGTGGACCATAAGAAAAAGAAGACTATTGTTGTACACAAGGAG  912
             ||| || ||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct  839   CCAAATAAACTAAGAATCGTAGACCACAAGAAAAAGAAGACTATTGTTGTACACAAGGAG  898

Query  913   GGACAAGTTGATGCCGTGGTGTGGAATCCATGGGATAAGAAAGTATCCGATTTGGGAGTT  972
             ||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct  899   GGACAAGTTGATGCCGTGGTGTGGAATCCATGGGACAAGAAAGTGTCAGATTTGGGAGTT  958

Query  973   GAAGACTATAAGCGTTTTGTAACGGTGGAAAGCGCGGCTGTCGCGAAACCGATCACAGTG  1032
             ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  959   GAAGACTATAAGCGTTTTGTAACGGTGGAAAGCGCGGCTGTCGAGAAACCGATCACAGTG  1018

Query  1033  AACCCCGGCAAAGAATGGAAAGGAATACTCCATGTTTCTGTGGTTCCATCAAATCGGAAA  1092
             |||||||||||||||||||||||||||||||| || ||||||||||| |||||| |||||
Sbjct  1019  AACCCCGGCAAAGAATGGAAAGGAATACTCCAAGTATCTGTGGTTCCTTCAAATTGGAAA  1078

Query  1093  GCTTGACCCTATAAAAGTCTTGCATTCATCATCCTCATCCTTTaaaaaaaaaaaCTTAAA  1152
             |||||| |||| ||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct  1079  GCTTGAACCTA-AAAAGTCTTGCATTCATCATCCTCATC-TT-AAAAAAAAAAACTTAAA  1135

Query  1153  A-CTGTCTTTATTAAAGTATA--CTTAATGTTCCCGAGAGACATCACATGGTGAACACAA  1209
             | |||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||
Sbjct  1136  AACTGTCTTTATTAAAATATATACTTAATGTTCCCGAGAGACATCACATGGTGAACACAA  1195

Query  1210  AGTTAGTTGGGTTCCAAACTGGACTCTTGACCAGTTTTATTGTTTTGTAACTTTAGCATT  1269
             ||||||||||||||||||||||||||| ||||||||| |||||||||||| |  || |||
Sbjct  1196  AGTTAGTTGGGTTCCAAACTGGACTCT-GACCAGTTTCATTGTTTTGTAA-T--AGTATT  1251

Query  1270  CATGAAT  1276
             |||||||
Sbjct  1252  CATGAAT  1258



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 50017267104


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5