BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G25910.1 Length=1021 Score E Sequences producing significant alignments: (Bits) Value Ahg492226 jgi|Araly1|492226|fgenesh2_kg.7__1659__AT4G25910.1 1345 0.0 > Ahg492226 jgi|Araly1|492226|fgenesh2_kg.7__1659__AT4G25910.1 Length=1007 Score = 1345 bits (728), Expect = 0.0 Identities = 935/1028 (91%), Gaps = 41/1028 (4%) Strand=Plus/Plus Query 1 AAATCATCTCCAAGACGTATCAATATCATCATCAATCCACCAATGAAAAGTTCTCTCttt 60 ||||||||||||||||||||| || ||||||| |||||||||||||||||||| || | Sbjct 1 AAATCATCTCCAAGACGTATC-AT-CCATCATC-ATCCACCAATGAAAAGTTCTGTC--T 55 Query 61 ttttttCCCACTCTTACTCTGTTCTC-GCTACAGAATCTCCTGGGaaaaaaaaaaaaGAA 119 |||||| | | |||||||||||| || |||| | ||||||| |||||| || Sbjct 56 TTTTTT----C-C-TACTCTGTTCTCGGC-CCAGATTTTCCTGGG------AAAAAA-AA 101 Query 120 ACTTGATCCACCCGAATTCCCCAAATCTTCACAATTTCTGGAAACTCTCTCGATCGTGAA 179 ||| |||||||||||||||||||||||||| |||| ||||| | ||||||||||||| Sbjct 102 ACTCAATCCACCCGAATTCCCCAAATCTTCATTGTTTCAGGAAATTTTCTCGATCGTGAA 161 Query 180 GCAGAAAAGTGAGGTTCCAAATGGGTTCTGTTTCGGGTCAAACCCGAATTACAACGATGA 239 |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 162 GCAGAAAAGTGAGGATCCAAATGGGTTCGGTTTCGGGTCAAACCCGAATTACAACGATGA 221 Query 240 ACCTCTCGCTCTCAACAGCAGAGAAGAACCCTAATTTCCGCTCGTCGCTTCTCAATTCTA 299 |||||||||||||| ||||||| ||||| ||||||||||||| |||||||| ||||| | Sbjct 222 ACCTCTCGCTCTCATCAGCAGATAAGAATCCTAATTTCCGCTTATCGCTTCTAAATTCGA 281 Query 300 AGAACGCAATTTCAGATACTTTAGGGGTCTCTTCCAAATGCAGTACATTCCTCAGGGGTC 359 |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 282 AGAACGCAATTTCAGATAGTTTAGGAGTCTCTTCCAAATGCAGTACATTCCTCAGGGGTC 341 Query 360 AATTTCAAAGAATACATTTTTC-TTGGCTACAACACACTCGACCTTTGAG-A-A--A--A 412 |||||||||||||||||||||| || | | |||||||||||||||||||| | | | | Sbjct 342 AATTTCAAAGAATACATTTTTCTTTAG-TTCAACACACTCGACCTTTGAGAACACGATCA 400 Query 413 CGAACAGTATTTGGTCACGTGAGCTGCGTCATGCCGTTAACGGAAGAGAATGTGGAGAGA 472 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 401 CGAACAGTATTTGGTCACGTGAGCTGCGTCATGCCGTTAACGGAAGAGAATGTGGAGAGA 460 Query 473 GTGTTAGACGAAGTACGACCATCTCTAATGGCCGACGGAGGAAACGTGGCGTTGCACGAA 532 ||| |||| ||||||||||||||| ||||||| |||||||||||||||||| |||||||| Sbjct 461 GTGCTAGATGAAGTACGACCATCTTTAATGGCTGACGGAGGAAACGTGGCGCTGCACGAA 520 Query 533 ATCGACGGACTTGTGGTGGTTTTAAAGCTACAAGGAGCTTGTGGTTCGTGTCCTAGCTCA 592 ||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| Sbjct 521 ATCGACGGACTTGTGGTTGTTCTAAAGCTACAAGGAGCTTGTGGCTCGTGTCCTAGCTCG 580 Query 593 TCAATGACGTTGAAGATGGGAATCGAGAGTCGTCTTCGAGACAAGATTCCAGAGATCATG 652 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 581 TCAATGACATTGAAGATGGGAATCGAGAGTCGTCTTCGAGACAAGATTCCAGAGATCATG 640 Query 653 TCCGTTGAGCAGTTTCTTGAATCCGAGACAGGAGGTTTAGAGCTGAACGATGAGAACATT 712 ||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| Sbjct 641 TCCGTTGAGCAGTTTCTTGAATCCGAGACTGGCGGGTTAGAGCTGAACGATGAGAACATT 700 Query 713 GAGAAGGTTCTCTCTGAGTTAAGGCCGTACCTATCCGGTACTGGAGGTGGGGGGCTTGAG 772 || ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| Sbjct 701 GAAAAGGTTCTCTCTGAGCTAAGGCCGTACCTATCCGGTACGGGAGGTGGGGGGCTTGAG 760 Query 773 TTAGTTGAGATTGATGGTTACGTGGTCAAGGTTCGACTCACTGGACCAGCTGCTGGAGTC 832 | ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 761 CTGGTTGAGATTGATGGTTACGTGGTTAAGGTTCGGCTCACTGGACCAGCTGCTGGAGTC 820 Query 833 ATGACTGTTCGTGTCGCGTTGACTCAAAAACTGAGGGAAA-CAATTCCTTCTATAGGTGC 891 |||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||| Sbjct 821 ATGACTGTTCGTGTCGCGTTGACTCAAAAACTGAGGGAAAACA-TTCCTTCTATTGGTGC 879 Query 892 AGTCCAGCTTCTAGAGTGACATTAACCTTTTT-ATTTTGTAACTT-----AT--AT--AC 941 |||||||||||||||||||||||||||||||| |||||||||||| || || || Sbjct 880 AGTCCAGCTTCTAGAGTGACATTAACCTTTTTTATTTTGTAACTTCTTCTATTCATCTAC 939 Query 942 AAGGCCTATTTTTGATTCAATATATTTTATTTCCAA-TTATATAATTAGTACAACTAATA 1000 |||||||||||||||||| ||||||||||||||||| || || ||||||||||| ||||| Sbjct 940 AAGGCCTATTTTTGATTCTATATATTTTATTTCCAAATTCTAGAATTAGTACAATTAATA 999 Query 1001 CAATAACC 1008 |||| ||| Sbjct 1000 CAATGACC 1007 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37970425332 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5