BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G26150.1 Length=1304 Score E Sequences producing significant alignments: (Bits) Value Ahg492197 jgi|Araly1|492197|fgenesh2_kg.7__1630__AT4G26150.1 1687 0.0 > Ahg492197 jgi|Araly1|492197|fgenesh2_kg.7__1630__AT4G26150.1 Length=1302 Score = 1687 bits (913), Expect = 0.0 Identities = 1201/1331 (90%), Gaps = 56/1331 (4%) Strand=Plus/Plus Query 1 ATGGGTTCCAATTTTCATTACACAATAGATCTCAATGAAGATCAAAACCATCAGCCTTTT 60 |||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1 ATGGGTTCGAATTTTCATTACACTATAGATCTCAATGAAGATCAAAACCATCAACCTTTT 60 Query 61 TTCGCTTCTCTTGGATCCTCTCTTCATCATCATCTacaacaacaacaacaacaacaacaa 120 |||||||||||||||||||||||||||||||| | || ||||||||| Sbjct 61 TTCGCTTCTCTTGGATCCTCTCTTCATCATCA--T-------------CATCAACAACAA 105 Query 121 caTTTTCATCACCAAGCTTCTTCTAATCCCTCTTCTTTGATGTCACCGTCTCTTTCCTAC 180 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 106 CATTTTCATCACCAAGCTTCTTCTAATCCCTCTTCTTCGATGTCACCGTCTCTTTCCTAC 165 Query 181 TTTCCTTTCTTGATAAACTCTCGCCAAGATCAAGTATATGTTGGGTACAACAATAACACT 240 |||||||||||||| ||||||| |||||||| | | ||||||||||||||||||||| Sbjct 166 TTTCCTTTCTTGATCAACTCTCCCCAAGATC----A-A-GTTGGGTACAACAATAACACT 219 Query 241 TTTCATGATGTTCTTGATACCCATATCTCCCAACCTCTCGAGACCAAGAACTTTGTATCT 300 |||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||| Sbjct 220 TTTCATGATGTTCTTGATACCCATCTCTCTCAACCTCTCGAGACCAAG---TTTGTATCT 276 Query 301 GATGGTGGTTCATCATCAAGTGATCAAATGGTGCCCAAGAAGGAGACACGACTAAAATTG 360 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 277 GATGGTGGTTCATCATCAAGTGATCAAATGGTGCCAAAGAAGGAGACACGACTAAAATTG 336 Query 361 ACGATAAAGAAGAAAGATAATCATCAAGACCAAACCGATCTTCCTCAATCCCCAATAAAA 420 ||||||||||||||| |||||||||||||||||||| |||||||||||||||| | |||| Sbjct 337 ACGATAAAGAAGAAATATAATCATCAAGACCAAACCAATCTTCCTCAATCCCCGACAAAA 396 Query 421 GACATGACAGGAACTAACTCGCTCAAGTGGATATCTTCGAAGGTGAGATTAATGAAGAAG 480 || | | |||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 397 GATAAGGCAGGAACTAATTCGCTCAAGTGGATATCTTCGAAGGTGAGATTGATGAAGAAG 456 Query 481 AAAAAGGCGATTATTACCACCAGCGACAGCAGCAAACAACACACTAATAACGACCAATCC 540 |||||||| ||||||||||||| |||||||| |||||||||| ||||||||||||||||| Sbjct 457 AAAAAGGCCATTATTACCACCACCGACAGCAACAAACAACACGCTAATAACGACCAATCC 516 Query 541 TCAAACCTAAGCAATTC-GGAAAGACAGAATGGTTATAACAACGATTGCGTGATTAGGAT 599 |||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||| Sbjct 517 TCAAACCTAAGCAA-TCTGGAAAGACAGAATGGTTATAACAACAATTGCGTGATTAGGAT 575 Query 600 TTGCTCCGATTGTAACACAACCAAGACTCCTCTTTGGAGAAGTGGTCCGAGAGGTCCCAA 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 576 TTGCTCCGATTGTAACACAACCAAGACTCCTCTTTGGAGAAGTGGTCCGAGAGGTCCCAA 635 Query 660 GTCTCTTTGTAACGCTTGTGGAATAAGGCAAAGGAAGGCCAGGCGGGCCGCTATGGCCAC 719 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 636 GTCTCTTTGTAACGCTTGTGGAATAAGGCAAAGAAAGGCGAGGCGGGCCGCTATGGCCAC 695 Query 720 GGCAACCGCAACCGCAGTCTCTGGCGTATCCCCACCGGTCATGAAGAAGAAGATGCAAAA 779 |||||| ||||||||| |||||| |||||| ||||| |||||||||||||||||||||| Sbjct 696 GGCAACTGCAACCGCAATCTCTGACGTATCACCACCTCTCATGAAGAAGAAGATGCAAAA 755 Query 780 CAAGAACAAGATATCAAATGGAGTTTATAAAATCTTATCTCCTTTGCCCCTAAAGGTAAA 839 ||||||||||||||||||||||||||||||| || ||||||| | | ||||||||||| Sbjct 756 CAAGAACAAGATATCAAATGGAGTTTATAAACCCTCCTCTCCTTCGGCTCTAAAGGTAAA 815 Query 840 CACGTGTAAGAGAATGATCACACTAGAGGAGACCGCATTAGCCGAGGATTTGGAGACCCA 899 || |||||||||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct 816 CATGTGTAAGAGAATGATCACACTAGAGGAGACCGCAGCAGCCGAGGATTTGGAGACTCA 875 Query 900 GAGCAACTCCACGATGTTATCA--T-CTTCA------GACAATA-TCTATTTCGATGATC 949 |||||||||||||||||||||| | ||||| ||||| | | ||||||||||||| Sbjct 876 GAGCAACTCCACGATGTTATCACCTTCTTCATCTTCAGACAAGAAT-TATTTCGATGATC 934 Query 950 TAGCATTACTGTTGAGCAAAAGTTCAGCTTATCAGCAAGTTTTCCCTCAAGATGAGAAGG 1009 ||||| || | ||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 935 TAGCAATAATCTTGAGCAAAAGTTTAGCTTATCAGCAAGTTTTCCCTCAGGATGAGAAGG 994 Query 1010 AGGCTGCCATTTTACTAATGGCTCTATCGCACGGAATGGTTCACGGGTGATTATTTTAAG 1069 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 995 AGGCTGCCATTTTACTAATGGCTCTATCGCACGGAATGGTTCACGGGTGATTATTTTAAT 1054 Query 1070 TATTTTAATTATAACTCGCATGCTTAAGAAAT-A---A---AATATAAACCATACCATAA 1122 |||||| ||||||||| | |||||||||||| | | ||||||||||||||||||| Sbjct 1055 TATTTTTATTATAACTTACCTGCTTAAGAAATTAGGGAGTTAATATAAACCATACCATAA 1114 Query 1123 GCCCTCATAGCTAGTAATATCTAGATTATT--TGA-TACA-TGAAA-TTTTGTTGC--G- 1174 |||| ||| | | ||||||||||| |||| | | | ||||| ||||||| | | Sbjct 1115 TCCCTGATACCAAATAATATCTAGAATATTAATTAGTTTGGTGAAAATTTTGTTTCTTGC 1174 Query 1175 -GTGATATATTAATTTCAGTCAGTCCAACTTTATTATAAGAGAGTGTTGGGGTTTAGTAG 1233 ||||||||| | | ||||||||||||||||||| |||||||| |||||||||||| ||| Sbjct 1175 CGTGATATAT-A-TATCAGTCAGTCCAACTTTATAATAAGAGAATGTTGGGGTTTACTAG 1232 Query 1234 ATTTTGTATGAAAGGCTTGTATTTTATTTTTTATGGAACTTGATATCCCAACAATGTGGT 1293 |||||||||| ||||||||| ||| ||||||||||||||||||||||| | |||||||| Sbjct 1233 ATTTTGTATGGAAGGCTTGTGGTTT-TTTTTTATGGAACTTGATATCCCGAGAATGTGGT 1291 Query 1294 TGTTCTTGTTC 1304 ||||||||||| Sbjct 1292 TGTTCTTGTTC 1302 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48759210843 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5