BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G26270.1 Length=2086 Score E Sequences producing significant alignments: (Bits) Value Ahg492186 jgi|Araly1|492186|fgenesh2_kg.7__1619__AT4G26270.1 1642 0.0 Ahg495754 jgi|Araly1|495754|fgenesh2_kg.8__1570__AT5G56630.1 1423 0.0 > Ahg492186 jgi|Araly1|492186|fgenesh2_kg.7__1619__AT4G26270.1 Length=1799 Score = 1642 bits (889), Expect = 0.0 Identities = 1021/1082 (94%), Gaps = 19/1082 (2%) Strand=Plus/Plus Query 92 TTTACCGACTACAATGGTCAAAATTTCTCTACTCCTATAAAAATGGGTCGCCTTGTTTTT 151 |||||||||| |||||||||||| ||||||| ||||||||||| |||||||||||||||| Sbjct 1 TTTACCGACTCCAATGGTCAAAA-TTCTCTAATCCTATAAAAAAGGGTCGCCTTGTTTTT 59 Query 152 GATCAACGGATTTGATTCATCTTTCTTTTTACCTTTCTTCCTGCTTTCGTATTCAATTTG 211 |||| |||||||||||||| | ||||||||||| |||||||||||||||| Sbjct 60 GATCTACGGATTTGATTCA----------T--CTTTCTTCCTGATTTCGTATTCAATTTG 107 Query 212 TAGTTGACCAGTTCAAAAGTCTCTATACCAG-aaaaaaaaa-TCG-TTTTTTATTATATT 268 | |||||| ||||| ||||||||||||| || ||||||||| ||| ||||| |||| ||| Sbjct 108 TCGTTGACGAGTTC-AAAGTCTCTATACGAGAAAAAAAAAATTCGATTTTTAATTAAATT 166 Query 269 ATAAGACTTTTCCCCTGAA-ATTGTTGTTCCTCTGTTTCGAGCGTTCGTTATGAGTACTG 327 |||||| |||||||||||| ||||||||||||||||||| | | ||||||||||||||| Sbjct 167 ATAAGAGTTTTCCCCTGAAGTTTGTTGTTCCTCTGTTTCGTGAG-TCGTTATGAGTACTG 225 Query 328 TGGAGAGTAGCAAACCGAAGATCATCAATGGCTCTTGTGGTTATGTTCTAGAAGATGTAC 387 |||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || | Sbjct 226 TGGAAAGTAGCAAACCGAAGATCATCAATGGTTCTTGTGGTTATGTTCTAGAAGACGTTC 285 Query 388 CGCATCTCTCCGATTACCTTCCTGGTCTTCCTACTTATCCTAATCCATTGCAAGACAATC 447 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 286 CTCATCTCTCCGATTACCTTCCTGGTCTTCCTACTTATCCTAATCCATTGCAAGACAATC 345 Query 448 CAGCTTACTCAGTGGTTAAGCAATACTTTGTTGATGCTGATGACAGTGTTCCTCAAAAGA 507 |||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 346 CAGCATACTCAGTGGTGAAGCAATACTTTGTTGATGCTGATGATAGTGTTCCTCAAAAGA 405 Query 508 TCGTTGTTCACAAGGATGGTCCAAGGGGGATTCATTTTAGACGAGCCGGGCCACGTCAGA 567 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 406 TCGTTGTTCACAAGGATGGTCCAAGGGGGATTCATTTTAGACGAGCAGGGCCACGTCAAA 465 Query 568 AGGTATACTTCGAATCTGATGAAGTGCATGCTTGCATAGTTACCTGTGGAGGTCTTTGTC 627 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 466 AGGTATACTTCGAATCTGATGAAGGGCATGCTTGCATAGTTACCTGTGGAGGTCTTTGTC 525 Query 628 CTGGCCTTAATACCGTGATTAGAGAAATAGTGAGCAGTCTATCTTATATGTATGGAGTGA 687 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 526 CTGGCCTTAATACCGTGATTAGAGAAATAGTGAGCAGTCTATCTTATATGTATGGAGTGA 585 Query 688 AGAGAATACTGGGAATAGATGGTGGATATAGAGGCTTTTATGCTAAGAATACTGTCTCCT 747 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 586 AGAGAATACTGGGAATAGATGGTGGATATAGAGGCTTTTATGCTAAGAATACTGTCTCCT 645 Query 748 TGGACTCTAAAGTTGTAAATGATATCCATAAGCGTGGAGGGACTATCCTTGGGACCTCAC 807 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 646 TGGACTCTAAAGTCGTAAATGATATCCATAAGCGTGGAGGGACTATCCTCGGGACCTCGC 705 Query 808 GAGGTGGTCACGATACCACAAAGATAGTTGACAGCATTCAAGATCGAGGAATCAATCAGG 867 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 706 GAGGTGGTCACGATACCACAAAGATAGTTGACAGCATTCAAGATCGAGGAATCAATCAGG 765 Query 868 TTTACATTATAGGAGGAGATGGAACACAGCGAGGAGCATCTGTCATATTTGAGGAAATTA 927 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 766 TTTACATTATAGGAGGAGATGGAACTCAGCGAGGAGCATCTGTTATATTTGAGGAAATTA 825 Query 928 GAAGACGTGGCCTGAAAGTTGCAGTTATTGGAATCCCGAAAACAATCGATAATGACATAC 987 || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 826 GACGACGTGGCCTGAAAGTTGCAGTTGTTGGAATCCCGAAAACAATCGATAATGACATAC 885 Query 988 CTGTGATAGACAAATCTTTTGGGTTTGACACTGCTGTAGAAGAGGCTCAACGAGCTATTA 1047 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 886 CTGTGATAGACAAATCTTTTGGGTTTGACACAGCTGTAGAAGAGGCTCAACGAGCTATTA 945 Query 1048 ATGCAGCACATGTGGAAGCCGAGAGTATAGAGAATGGTATCGGAGTTGTCAAGCTTATGG 1107 | ||||||||||||||||| |||||||||||||| ||||| || |||||||||||||||| Sbjct 946 ACGCAGCACATGTGGAAGCGGAGAGTATAGAGAACGGTATTGGCGTTGTCAAGCTTATGG 1005 Query 1108 GTCGCTACAGCGGGTTCATAGCGATGTATGCCACTCTAGCAAGCAGAGATGTGGACTGCT 1167 | ||||||||||| |||||||||||||| || |||||||||||||||||||||||||||| Sbjct 1006 GCCGCTACAGCGGTTTCATAGCGATGTACGCGACTCTAGCAAGCAGAGATGTGGACTGCT 1065 Query 1168 GT 1169 || Sbjct 1066 GT 1067 Score = 1090 bits (590), Expect = 0.0 Identities = 699/749 (93%), Gaps = 18/749 (2%) Strand=Plus/Plus Query 1203 GAAGGCGGACTGTTTGAGTACATAGAGAAACGACTCAAGGAGAGCGGTCACATGGTTCTT 1262 ||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||| Sbjct 1068 GAAGGTGGACTGTTTGAGTACATAGAGAAACGGCTCAAGGAGAGTGGTCATATGGTGCTT 1127 Query 1263 GTGATTGCAGAAGGTGCAGGACAAGATCTAATGTCGAAGAGCATGGAATCTATGACACTC 1322 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1128 GTGATTGCAGAAGGTGCAGGACAAGATCTAATGTCAAAGAGCATGGAATCTATGACACTC 1187 Query 1323 AAAGATGCATCTGGTAACAAACTTCTTAAAGATGTTGGCCTTTGGCTGTCACAAAGCATC 1382 || ||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||| Sbjct 1188 AAGGATGCATCTGGTAACAAACTTCTCAAAGATGTTGGTCTTTGGTTGTCACAAAGCATC 1247 Query 1383 AAGGATCATTTTAATCAGAAGAAGATGGTGATGAACCTCAAGTACATAGATCCAACATAC 1442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1248 AAGGATCATTTTAATCAGAAGAAGATGGTGATGAACCTCAAGTACATAGATCCAACGTAC 1307 Query 1443 ATGATTCGAGCTGTTCCTAGCAATGCGTCAGACAATGTTTATTGTACACTTCTGGCTCAG 1502 |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1308 ATGATTCGGGCTATTCCTAGCAATGCGTCAGACAATGTTTATTGTACACTTCTGGCTCAG 1367 Query 1503 AGTGCAGTGCACGGTGCAATGGCTGGATACACTGGCTATATCAGTGGTCTAGTGAACGGA 1562 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1368 AGTGCAGTGCACGGTGCAATGGCTGGATACACTGGCTATATCAGTGGTTTAGTGAACGGA 1427 Query 1563 AGACAAACCTACATACCCTTTTACAGGATAACGGAGAAACAGAACCATGTGGTGATCACA 1622 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1428 AGACAAACCTACATACCCTTCTACAGGATAACGGAGAAACAGAACCATGTGGTGATCACA 1487 Query 1623 GACAGGATGTGGGCAAGGCTACTCTCTTCGACAAACCAGCCGAGTTTCTTGGGCCCCAAA 1682 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1488 GACAGGATGTGGGCAAGGCTACTATCTTCGACAAACCAGCCGAGTTTCTTGGGCCCCAAA 1547 Query 1683 GATGTCTTTGATAATAAAGAGAAACCGATGTCGGCTCTCCTTGACGATGGTAACTGCAAT 1742 ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| Sbjct 1548 GATGTCTTTGATAATAAAGAGAAGCCGATGTCGGCTCTCCTGGACGATGGCAACTGCAAT 1607 Query 1743 GGCGTGGTGGATGTTCCTCCAGTCACCAAAGAGATCACCAAGTGACCTGAACATAAGAAC 1802 ||| |||| |||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 1608 GGCATGGTCGATGTTCCTCCAGTCACCAAAGAGATCAACAAGTGACCTGAACATAGGAAC 1667 Query 1803 AACGACAGAAAAGCTTTG-CGTTTTCAAAAGATGTTACATGTTTTAGGTAGTTGAGTAAA 1861 ||||||| || |||||| |||||||||| | ||||||| ||||||||||| ||||||| Sbjct 1668 AACGACATAA--GCTTTGGCGTTTTCAAATGGTGTTACAAGTTTTAGGTAG--GAGTAAA 1723 Query 1862 ATAATAGGGTGTTGACGGTTTTACCCTTTTTGGCATAACAAAGCAATCTTTGTTAGATGC 1921 |||| ||||| ||||| |||||||||||||||||| ||| || | |||||| Sbjct 1724 ATAAAAGGGTTTTGACTGTTTTACCCTTTTTGGCA---CAA--CA-T-------AGATGC 1770 Query 1922 CTCACGTTGTAATTTTCCACGTCATGATG 1950 |||| |||||||||||||||||| ||||| Sbjct 1771 CTCATGTTGTAATTTTCCACGTCCTGATG 1799 > Ahg495754 jgi|Araly1|495754|fgenesh2_kg.8__1570__AT5G56630.1 Length=2015 Score = 1423 bits (770), Expect = 0.0 Identities = 1171/1366 (86%), Gaps = 22/1366 (2%) Strand=Plus/Plus Query 330 GAG-AGTAGCAAACCGAAGATCATCAATGGCT-CTTGTGGTTATGTTCTAGAAGATGTAC 387 ||| |||| ||| ||||||||| |||| || | || |||||||| |||| |||| || | Sbjct 368 GAGAAGTAACAAGCCGAAGATCGTCAACGG-TCCTGGTGGTTATATTCTTCAAGACGTTC 426 Query 388 CGCATCTC-TCCGATTACCTTCCTGGTCTTCCTACTTATCCTAATCCATTGCAAGACAAT 446 | |||||| | ||||| ||||||| ||||||||||||||| |||||||||||||||||| Sbjct 427 CTCATCTCAT-TGATTATCTTCCTGATCTTCCTACTTATCCGAATCCATTGCAAGACAAT 485 Query 447 CCAGCTTACTCAGTGGTTAAGCAATACTTTGTTGATGCTGATGACAGTGTTCCTCAAAAG 506 |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| | ||| Sbjct 486 CCAGCTTACTCAGTGGTTAAGCAATACTTTGTTGATGCAGATGATAGTGTCCCTGAGAAG 545 Query 507 ATCGTTGTTCACAAGGATGGTCCAAGGGGGATTCATTTTAGACGAGCCGGGCCACGTCAG 566 | ||||||||||||||||||||||| || || ||||| || || || || |||||||| Sbjct 546 GTTGTTGTTCACAAGGATGGTCCAAGAGGAATCCATTTCAGGCGCGCTGGTCCACGTCAA 605 Query 567 AAGGTATACTTCGAATCTGATGAAGTGCATGCTTGCATAGTTACCTGTGGAGGTCTTTGT 626 ||||| ||||| || ||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 606 AAGGTTTACTTTGAGTCTGATGAAGTGCATGCTTGCATAGTTACATGTGGAGGTCTCTGT 665 Query 627 CCTGGCCTTAATACCGTGATTAGAGAAATAGTGAGCAGTCT-ATCTTATATGTATGGAGT 685 || || || |||||||| ||||||||||| |||||||| || ||| || ||||||||||| Sbjct 666 CCCGGTCTCAATACCGTCATTAGAGAAATTGTGAGCAG-CTTATCATACATGTATGGAGT 724 Query 686 GAAGAGAATACTGGGAATAGATGGTGGATATAGAGGCTTTTATGCTAAGAATACTGTCTC 745 ||||||||| || ||||| ||||||||||| ||||| || || || ||||||||| || | Sbjct 725 GAAGAGAATCCTTGGAATCGATGGTGGATACAGAGGATTCTACGCCAAGAATACTATCCC 784 Query 746 CTTGGACTCTAAAGTTGTAAATGATATCCATAAGCGTGGAGGGACTATCCTTGGGACCTC 805 ||| |||||||||| || ||||||||||||||||| ||||| || || || |||||||| Sbjct 785 CTTAAACTCTAAAGTCGTGAATGATATCCATAAGCGCGGAGGAACCATTCTCGGGACCTC 844 Query 806 ACGAGGTGGTCACGATACCACAAAGATAGTTGACAGCATTCAAGATCGAGGAATCAATCA 865 | ||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||| Sbjct 845 AAGAGGTGGACACGATACCACGAAGATAGTTGATAGCATTCAAGATCGAGGAATTAATCA 904 Query 866 GGTTTACATTATAGGAGGAGATGGAACACAGCGAGGAGCATCTGTCATATTTGAGGAAAT 925 |||||||||||| |||||||||||||| ||| |||| || || || |||||||||||||| Sbjct 905 GGTTTACATTATTGGAGGAGATGGAACCCAGAGAGGTGCTTCAGTAATATTTGAGGAAAT 964 Query 926 TAGAAGACGTGGCCTGAAAGTTGCAGTTATTGGAATCCCGAAAACAATCGATAATGACAT 985 |||||||||||| || |||||||| || ||||||| |||||||| || |||||||| || Sbjct 965 TAGAAGACGTGGACTTAAAGTTGCTGTGGTTGGAATTCCGAAAACTATTGATAATGATAT 1024 Query 986 ACCTGTGATAGACAAATCTTTTGGGTTTGACACTGCTGTAGAAGAGGCTCAACGAGCTAT 1045 ||||| |||||||||||||||||||||||||||||||| || || ||||||||||| || Sbjct 1025 TCCTGTAATAGACAAATCTTTTGGGTTTGACACTGCTGTGGAGGAAGCTCAACGAGCAAT 1084 Query 1046 TAATGCAGCACATGTGGAAGCCGAGAGTA-TAGAGAATGGTATCGGAGTTGTCAAGCTTA 1104 ||| ||||||||||| ||||| ||||| | | |||||||||||||| |||||||||||| Sbjct 1085 TAACGCAGCACATGTCGAAGCTGAGAGCAAT-GAGAATGGTATCGGTTTTGTCAAGCTTA 1143 Query 1105 TGGGTCGCTACAGCGGGTTCATAGCGATGTATGCCAC-TCTAGCAAGCAGAGATGTGGAC 1163 ||||||| |||||||||||||||||||||||||| || | |||| ||||||||||| ||| Sbjct 1144 TGGGTCGTTACAGCGGGTTCATAGCGATGTATGCTACAT-TAGCCAGCAGAGATGTTGAC 1202 Query 1164 TGCTGTTTGATTCCGGAGTCACCATTTTACCTGGAAGGAGAAGGCGGACTGTTTGAGTAC 1223 || || |||||||| ||||||||||||||||| ||||||||||| ||||| ||||||| | Sbjct 1203 TGTTGCTTGATTCCTGAGTCACCATTTTACCTCGAAGGAGAAGGTGGACTCTTTGAGTTC 1262 Query 1224 ATAGAGAAACGACTCAAGGAG-AGCGGTCACATGGTTCTTGTGATTGCAGAAGGTGCAGG 1282 |||||| ||| ||||||||| | ||||||||||| |||| |||| ||||||||||| Sbjct 1263 GTAGAGAGACGGCTCAAGGAGCAT-GGTCACATGGTGATTGTTCTTGCTGAAGGTGCAGG 1321 Query 1283 ACAAGATCTAATGT-CGAAGAGCATGGAATCTATGACACTCAAAGATGCATCTGGTAACA 1341 ||| ||| | |||| | || ||||||||||||| | || || ||||| ||||| |||| Sbjct 1322 ACAGGATTTGATGTGCAAA-AGCATGGAATCTA---CTCTTAAGGATGCTTCTGGGAACA 1377 Query 1342 AACTTCTTAAAGATGTTGGCCTT-TGGCTGTCACAAAGCATCAAGGATCATTTTAATCAG 1400 |||||||||||||||| ||| || ||||| |||||||||||||||| | |||||||| || Sbjct 1378 AACTTCTTAAAGATGTCGGC-TTGTGGCTATCACAAAGCATCAAGGTTTATTTTAATAAG 1436 Query 1401 AAGAAGATGGTGATGAACCTCAAGTACATAGATCCAACATACATGATTCGAGCTGTTCCT 1460 || |||||||||||||| ||||| ||||| ||||| ||||||||||| || |||||||| Sbjct 1437 AATAAGATGGTGATGAATCTCAAATACATTGATCCTACATACATGATCCGGGCTGTTCCA 1496 Query 1461 AGCAATGCGTCAGACAATGTTTATTGTACACTTCTGGCTCAGAGTGCAGTGCACGGTGCA 1520 || ||||| |||||||||||||| ||||||||||| |||||||| || || || |||||| Sbjct 1497 AGTAATGCATCAGACAATGTTTACTGTACACTTCTTGCTCAGAGCGCGGTTCATGGTGCA 1556 Query 1521 ATGGCTGGATACACTGGCTATATCAGTGGTCTAGTGAACGGAAGACAAACCTACATACCC 1580 |||||||| ||||||||||| | ||||||||| || || ||||||||||| ||||| ||| Sbjct 1557 ATGGCTGGTTACACTGGCTACACCAGTGGTCTTGTCAATGGAAGACAAACATACAT-CCC 1615 Query 1581 TTT-TACAGGATAACGGAGAAACAGAACCATGTGGTGATCACAGACAGGATGTGGGCAAG 1639 || ||||||||||| |||| |||||| |||| || || || || || |||||||| || Sbjct 1616 TTACTACAGGATAACAGAGACGCAGAACAATGTAGTAATTACGGATAGAATGTGGGCGAG 1675 Query 1640 GCTACTCTCTTCGACAAACCAGCCGAGTTTCTTGGGCCCCAAAGAT 1685 | || | ||||| || |||||||| ||||||||||| || || ||| Sbjct 1676 GTTATTGTCTTCTACGAACCAGCCAAGTTTCTTGGGGCCTAAGGAT 1721 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78465904700 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5