BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26310.2
Length=1231
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945443 jgi|Araly1|945443|scaffold_701672.1 1088 0.0
> Ahg945443 jgi|Araly1|945443|scaffold_701672.1
Length=815
Score = 1088 bits (589), Expect = 0.0
Identities = 677/719 (94%), Gaps = 7/719 (1%)
Strand=Plus/Plus
Query 152 GATTGCAAGGGTTAAACGGAGATGAGAGGGCTGCACCATTTCAAGAGAAtctcaat-ctc 210
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1 GATTGCAAGGGTTAAACGGAGATGAGAGGGCTGCACCATTTGAAGAGAATCTCAATAGT- 59
Query 211 tcgatctctcttctccttctctAATGCCACTTCTCCTGGGGCAGTAACGACTAGGAGGTC 270
||||||||||||| ||||||||||| |||||||||| || ||| ||||||||||||| ||
Sbjct 60 TCGATCTCTCTTCACCTTCTCTAATACCACTTCTCCCGGAGCACTAACGACTAGGAGATC 119
Query 271 TCTTTATTCTTTGAGCAGGTCGTTGTTGTCATCAACCCCGT-ACGCCGCCGGTGGATGCT 329
|| |||||||||||| | |||||||||||||||||| | ||||||||||||||||||
Sbjct 120 ACTGTATTCTTTGAGC-CG--GTTGTTGTCATCAACCCC-TAACGCCGCCGGTGGATGCT 175
Query 330 GCCGAGAAACGCCTCCGCTTCATTCTCCGTGGTCTGCTCTGCAACGCCGCGGTGTTAAGG 389
||||||||| ||||||||||| || |||||||||||| ||||||||||||||||||| |
Sbjct 176 ACCGAGAAACACCTCCGCTTCAGTCCCCGTGGTCTGCTGTGCAACGCCGCGGTGTTAAAG 235
Query 390 TTAACGCGATTCAGCTAAGGGCAGGAAATGTAATTGAGCGAACAGGGCGTACTTTTCGGG 449
||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 236 TTAACGCGATTCAGCTAAGGGCAGGGAATGTAATTGAACGAACAGGACGTACTTTTCGGG 295
Query 450 TTGTAGAAGCAGAGCATAAGCAACAAGGTAGAGGAGGAGCTTCCATACAGGTTGAGCTTC 509
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TTGTAGAAGCAGAGCATAAACAACAAGGTAGAGGAGGAGCTTCCATACAGGTTGAGCTTC 355
Query 510 GTGATGTTGACACTGGGAATAAGCTTAACTTGCGTTTTGGATCTGAGGAGTCGGTTGAGA 569
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 356 GTGATGTTGACACTGGGAATAAGCTTAACTTACGGTTTGGATCTGAGGAGTCGGTTGAGA 415
Query 570 AAGTTTTTGTTGAAGAGAAATCTTTCACGTGTTTGTATGCAGAGGGAGATACTGCATATC 629
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 416 AAGTTTTTGTTGAGGAGAAATCTTTCACGTGTTTGTATACAGAGGGAGATACTGCATTTC 475
Query 630 TGATTGAGCCTAATACGTTTGAGCAAGTTGAAGTGCCATTGGACATATTTGGAAAAGCTG 689
|||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||
Sbjct 476 TGATTGAGCCTAATACGTTTGAACAAGTTGAAGTGCCACTGGACATATTTGGCAAAGCTG 535
Query 690 CTGTATATTTAAAAGAGGAAATGAAAGTTCAGTTGCAGCTGTATGATGGAAGAGCTTTAT 749
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CAGTATATTTAAAAGAGGAAATGAAAGTTCAGTTGCAGCTGTATGATGGAAGAGCTTTAT 595
Query 750 CTGCATCTATCCCTAAGCATATCACATGCACAGTTGTAGAAACACAACTTCCAATGAAAG 809
|||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||
Sbjct 596 CTGCATCTATCCCTAAGCATATTACATGCACAGTTGTAGAAACACAAGATCCCATGAAAG 655
Query 810 GCCTAACATCAGCTCCTCGGTACAAGAGAGCTCTCCTGGATAATGGTTCCACTATTCAG 868
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 656 GCCTAACATCAGCTCCTCGGTACAAGAGAGCGCTCCTGGATAATGGTTCCACTATTCAG 714
Score = 171 bits (92), Expect = 2e-41
Identities = 101/105 (96%), Gaps = 2/105 (2%)
Strand=Plus/Plus
Query 918 TCAGGTACCATCTTATCTCGAGGCAGGTGAAAAGATTGTGATAAACACTGAGGATGACTC 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TCAGGTACCATCTTATCTCGAGGCAGGTGAAAAGATTGTGATAAACACTGAGGATGACTC 770
Query 978 TTTTGTTAAGAGGGACAACAAATGAAACTATT--GCGTAGTCGTT 1020
||||||||||||||||||||||||||||| || | |||||||||
Sbjct 771 TTTTGTTAAGAGGGACAACAAATGAAACTCTTTTGAGTAGTCGTT 815
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45976237902
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5