BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G26310.2

Length=1231
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg945443 jgi|Araly1|945443|scaffold_701672.1                       1088    0.0  


> Ahg945443 jgi|Araly1|945443|scaffold_701672.1
Length=815

 Score = 1088 bits (589),  Expect = 0.0
 Identities = 677/719 (94%), Gaps = 7/719 (1%)
 Strand=Plus/Plus

Query  152  GATTGCAAGGGTTAAACGGAGATGAGAGGGCTGCACCATTTCAAGAGAAtctcaat-ctc  210
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  | 
Sbjct  1    GATTGCAAGGGTTAAACGGAGATGAGAGGGCTGCACCATTTGAAGAGAATCTCAATAGT-  59

Query  211  tcgatctctcttctccttctctAATGCCACTTCTCCTGGGGCAGTAACGACTAGGAGGTC  270
            ||||||||||||| ||||||||||| |||||||||| || ||| ||||||||||||| ||
Sbjct  60   TCGATCTCTCTTCACCTTCTCTAATACCACTTCTCCCGGAGCACTAACGACTAGGAGATC  119

Query  271  TCTTTATTCTTTGAGCAGGTCGTTGTTGTCATCAACCCCGT-ACGCCGCCGGTGGATGCT  329
             || ||||||||||||  |  |||||||||||||||||| | ||||||||||||||||||
Sbjct  120  ACTGTATTCTTTGAGC-CG--GTTGTTGTCATCAACCCC-TAACGCCGCCGGTGGATGCT  175

Query  330  GCCGAGAAACGCCTCCGCTTCATTCTCCGTGGTCTGCTCTGCAACGCCGCGGTGTTAAGG  389
             ||||||||| ||||||||||| || |||||||||||| ||||||||||||||||||| |
Sbjct  176  ACCGAGAAACACCTCCGCTTCAGTCCCCGTGGTCTGCTGTGCAACGCCGCGGTGTTAAAG  235

Query  390  TTAACGCGATTCAGCTAAGGGCAGGAAATGTAATTGAGCGAACAGGGCGTACTTTTCGGG  449
            ||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct  236  TTAACGCGATTCAGCTAAGGGCAGGGAATGTAATTGAACGAACAGGACGTACTTTTCGGG  295

Query  450  TTGTAGAAGCAGAGCATAAGCAACAAGGTAGAGGAGGAGCTTCCATACAGGTTGAGCTTC  509
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  296  TTGTAGAAGCAGAGCATAAACAACAAGGTAGAGGAGGAGCTTCCATACAGGTTGAGCTTC  355

Query  510  GTGATGTTGACACTGGGAATAAGCTTAACTTGCGTTTTGGATCTGAGGAGTCGGTTGAGA  569
            ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct  356  GTGATGTTGACACTGGGAATAAGCTTAACTTACGGTTTGGATCTGAGGAGTCGGTTGAGA  415

Query  570  AAGTTTTTGTTGAAGAGAAATCTTTCACGTGTTTGTATGCAGAGGGAGATACTGCATATC  629
            ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct  416  AAGTTTTTGTTGAGGAGAAATCTTTCACGTGTTTGTATACAGAGGGAGATACTGCATTTC  475

Query  630  TGATTGAGCCTAATACGTTTGAGCAAGTTGAAGTGCCATTGGACATATTTGGAAAAGCTG  689
            |||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||
Sbjct  476  TGATTGAGCCTAATACGTTTGAACAAGTTGAAGTGCCACTGGACATATTTGGCAAAGCTG  535

Query  690  CTGTATATTTAAAAGAGGAAATGAAAGTTCAGTTGCAGCTGTATGATGGAAGAGCTTTAT  749
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  536  CAGTATATTTAAAAGAGGAAATGAAAGTTCAGTTGCAGCTGTATGATGGAAGAGCTTTAT  595

Query  750  CTGCATCTATCCCTAAGCATATCACATGCACAGTTGTAGAAACACAACTTCCAATGAAAG  809
            |||||||||||||||||||||| ||||||||||||||||||||||||  ||| |||||||
Sbjct  596  CTGCATCTATCCCTAAGCATATTACATGCACAGTTGTAGAAACACAAGATCCCATGAAAG  655

Query  810  GCCTAACATCAGCTCCTCGGTACAAGAGAGCTCTCCTGGATAATGGTTCCACTATTCAG  868
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  656  GCCTAACATCAGCTCCTCGGTACAAGAGAGCGCTCCTGGATAATGGTTCCACTATTCAG  714


 Score =  171 bits (92),  Expect = 2e-41
 Identities = 101/105 (96%), Gaps = 2/105 (2%)
 Strand=Plus/Plus

Query  918   TCAGGTACCATCTTATCTCGAGGCAGGTGAAAAGATTGTGATAAACACTGAGGATGACTC  977
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  711   TCAGGTACCATCTTATCTCGAGGCAGGTGAAAAGATTGTGATAAACACTGAGGATGACTC  770

Query  978   TTTTGTTAAGAGGGACAACAAATGAAACTATT--GCGTAGTCGTT  1020
             ||||||||||||||||||||||||||||| ||  | |||||||||
Sbjct  771   TTTTGTTAAGAGGGACAACAAATGAAACTCTTTTGAGTAGTCGTT  815



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45976237902


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5