BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G26310.2 Length=1231 Score E Sequences producing significant alignments: (Bits) Value Ahg945443 jgi|Araly1|945443|scaffold_701672.1 1088 0.0 > Ahg945443 jgi|Araly1|945443|scaffold_701672.1 Length=815 Score = 1088 bits (589), Expect = 0.0 Identities = 677/719 (94%), Gaps = 7/719 (1%) Strand=Plus/Plus Query 152 GATTGCAAGGGTTAAACGGAGATGAGAGGGCTGCACCATTTCAAGAGAAtctcaat-ctc 210 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 1 GATTGCAAGGGTTAAACGGAGATGAGAGGGCTGCACCATTTGAAGAGAATCTCAATAGT- 59 Query 211 tcgatctctcttctccttctctAATGCCACTTCTCCTGGGGCAGTAACGACTAGGAGGTC 270 ||||||||||||| ||||||||||| |||||||||| || ||| ||||||||||||| || Sbjct 60 TCGATCTCTCTTCACCTTCTCTAATACCACTTCTCCCGGAGCACTAACGACTAGGAGATC 119 Query 271 TCTTTATTCTTTGAGCAGGTCGTTGTTGTCATCAACCCCGT-ACGCCGCCGGTGGATGCT 329 || |||||||||||| | |||||||||||||||||| | |||||||||||||||||| Sbjct 120 ACTGTATTCTTTGAGC-CG--GTTGTTGTCATCAACCCC-TAACGCCGCCGGTGGATGCT 175 Query 330 GCCGAGAAACGCCTCCGCTTCATTCTCCGTGGTCTGCTCTGCAACGCCGCGGTGTTAAGG 389 ||||||||| ||||||||||| || |||||||||||| ||||||||||||||||||| | Sbjct 176 ACCGAGAAACACCTCCGCTTCAGTCCCCGTGGTCTGCTGTGCAACGCCGCGGTGTTAAAG 235 Query 390 TTAACGCGATTCAGCTAAGGGCAGGAAATGTAATTGAGCGAACAGGGCGTACTTTTCGGG 449 ||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| Sbjct 236 TTAACGCGATTCAGCTAAGGGCAGGGAATGTAATTGAACGAACAGGACGTACTTTTCGGG 295 Query 450 TTGTAGAAGCAGAGCATAAGCAACAAGGTAGAGGAGGAGCTTCCATACAGGTTGAGCTTC 509 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 296 TTGTAGAAGCAGAGCATAAACAACAAGGTAGAGGAGGAGCTTCCATACAGGTTGAGCTTC 355 Query 510 GTGATGTTGACACTGGGAATAAGCTTAACTTGCGTTTTGGATCTGAGGAGTCGGTTGAGA 569 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 356 GTGATGTTGACACTGGGAATAAGCTTAACTTACGGTTTGGATCTGAGGAGTCGGTTGAGA 415 Query 570 AAGTTTTTGTTGAAGAGAAATCTTTCACGTGTTTGTATGCAGAGGGAGATACTGCATATC 629 ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| || Sbjct 416 AAGTTTTTGTTGAGGAGAAATCTTTCACGTGTTTGTATACAGAGGGAGATACTGCATTTC 475 Query 630 TGATTGAGCCTAATACGTTTGAGCAAGTTGAAGTGCCATTGGACATATTTGGAAAAGCTG 689 |||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||| Sbjct 476 TGATTGAGCCTAATACGTTTGAACAAGTTGAAGTGCCACTGGACATATTTGGCAAAGCTG 535 Query 690 CTGTATATTTAAAAGAGGAAATGAAAGTTCAGTTGCAGCTGTATGATGGAAGAGCTTTAT 749 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 536 CAGTATATTTAAAAGAGGAAATGAAAGTTCAGTTGCAGCTGTATGATGGAAGAGCTTTAT 595 Query 750 CTGCATCTATCCCTAAGCATATCACATGCACAGTTGTAGAAACACAACTTCCAATGAAAG 809 |||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| Sbjct 596 CTGCATCTATCCCTAAGCATATTACATGCACAGTTGTAGAAACACAAGATCCCATGAAAG 655 Query 810 GCCTAACATCAGCTCCTCGGTACAAGAGAGCTCTCCTGGATAATGGTTCCACTATTCAG 868 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 656 GCCTAACATCAGCTCCTCGGTACAAGAGAGCGCTCCTGGATAATGGTTCCACTATTCAG 714 Score = 171 bits (92), Expect = 2e-41 Identities = 101/105 (96%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 918 TCAGGTACCATCTTATCTCGAGGCAGGTGAAAAGATTGTGATAAACACTGAGGATGACTC 977 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 711 TCAGGTACCATCTTATCTCGAGGCAGGTGAAAAGATTGTGATAAACACTGAGGATGACTC 770 Query 978 TTTTGTTAAGAGGGACAACAAATGAAACTATT--GCGTAGTCGTT 1020 ||||||||||||||||||||||||||||| || | ||||||||| Sbjct 771 TTTTGTTAAGAGGGACAACAAATGAAACTCTTTTGAGTAGTCGTT 815 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45976237902 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5