BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26410.1
Length=1123
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945436 jgi|Araly1|945436|scaffold_701665.1 1334 0.0
> Ahg945436 jgi|Araly1|945436|scaffold_701665.1
Length=833
Score = 1334 bits (722), Expect = 0.0
Identities = 796/833 (96%), Gaps = 0/833 (0%)
Strand=Plus/Plus
Query 86 GAGAAAGGCAAATCGGAGACGATGAGCGAAACCGAAGCAACCGGCGTTACCGATGATTCG 145
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 GAGAAAGGCAAATCGGAGACGATGAGCGAAACCGAAGCAGCCGGCGTTACCGATGATTCG 60
Query 146 GCTCCAGCGATTGAGACTGAAACTGTTTCTGATGCGATGGAGCATACAGCGATCGGAGTG 205
||||||||||||| ||||||||||| | ||||||||| ||||||||||||||| ||||||
Sbjct 61 GCTCCAGCGATTGCGACTGAAACTGCTGCTGATGCGACGGAGCATACAGCGATTGGAGTG 120
Query 206 GTTGAATCGGTGGAAGGAGCCATAGAAGGAGCAGAGAAATGGGTGGGTGATTTGCAACGG 265
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 121 GTTGAATCGGTGGAAGGAGCCATAGAAGGAGCAGAGAAATGGGTGGATGATTTCCAACGG 180
Query 266 ACGGTGAAGGAATCGAAGGATACCGCAATGCGTTCTGCTCGTTCCCTCCGTGAAAATTCT 325
|||||||||||||||| |||| |||| ||||| ||||||||||||||||||||||| |||
Sbjct 181 ACGGTGAAGGAATCGACGGATTCCGCCATGCGCTCTGCTCGTTCCCTCCGTGAAAACTCT 240
Query 326 ACCTCTCAGTTCCGCTCTATACAGGATTTCATTCCACATGCTTTGACTCAGTATAAGACC 385
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 ACCTCTCAGTTCCGCTCTATACAGGATTTCATTCCACATGCTTTGACTCAATATAAGACC 300
Query 386 TATGAGAATGCTTTCTTCAGTAAAGTTACAGACGAATTGATATACGCAAAAGAGCATCCG 445
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 301 TATGAGAATGCTTTCTTCAGTAAAGTAACAGAAGAATTGATATACGCAAAAGAGCATCCG 360
Query 446 GCTGCTGCTATTGGGATTGGTGTCGCTGCTAGTCTCGTTCTGATGCGAGGCCCAAGAAGA 505
|||||| || |||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 361 GCTGCTACTGTTGGGATTGGTGTCGCTGCTGGTCTCGTTCTGATGCGAGGCCCAAAAAGA 420
Query 506 TTCTTGTTTCGTAATACACTAGGCCGATTTCAGAGCGAAGAGGCACAATTCTTGAAAGCT 565
|||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 421 TTCTTGTTTCGTCATACACTAGGCCGATTTCAGAGTGAAGAGGCACAGTTCTTGAAAGCT 480
Query 566 GAGAAGCATGTTCAGGAGTTAAACATGTCTGTAGACTTGATGAAAAAGGAGAGCAGGAAA 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAGAAGCATGTTCAGGAGTTAAACATGTCTGTAGACTTGATGAAAAAGGAGAGCAGGAAA 540
Query 626 TTGCTTGAGAGGACGGCTTTAGCAGAGAAGGATATGAAACGTGGTCTCTCTGAGCTCATG 685
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 541 TTGCTTGAGAGGACGGCTTTAGCAGAGAAGGATATGAAACGCGGTCTCTCTGAACTCATG 600
Query 686 AACTCTGGAAACGATATACATCGTCTTGCTAAGTCCGTCCACAAAGCTGAATGTGAAGCT 745
||||||||||||||||||||||| ||||||||||| |||||||| | |||||||||||||
Sbjct 601 AACTCTGGAAACGATATACATCGCCTTGCTAAGTCTGTCCACAAGGTTGAATGTGAAGCT 660
Query 746 GCTGATTTGATGGACGGACTTCGGCAAATTCCTGGAAGGGATGCTATCAAGCTTAGAGCT 805
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 GCAGATTTGATGGACGGACTTCGGCAAATTCCTGGAAGGGAAGCTATCAAGCTTAGAGCT 720
Query 806 GAAGTGGCTTCCATGACTTCGCTTTTGAGACAGAAGAGGATTGCATTGAACAAAAGGATC 865
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 721 GAAGTGGCTTCCATGACTTCGCTCTTGAGACAGAAGAGGATTGCATTGAACAAAAGGATC 780
Query 866 ATGGGTATGTCGGACCTAGGAGTTTCCGTCTGATATATCCAACACAAATCCAC 918
||| ||||||| || ||||||||| ||||||||||||||||||||||| ||||
Sbjct 781 ATGAGTATGTCTGAGCTAGGAGTTCCCGTCTGATATATCCAACACAAACCCAC 833
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41858962866
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5