BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G26530.1 Length=1372 Score E Sequences producing significant alignments: (Bits) Value Ahg492157 jgi|Araly1|492157|fgenesh2_kg.7__1590__AT4G26530.2 2158 0.0 Ahg492160 jgi|Araly1|492160|fgenesh2_kg.7__1593__AT4G26520.1 1524 0.0 > Ahg492157 jgi|Araly1|492157|fgenesh2_kg.7__1590__AT4G26530.2 Length=1422 Score = 2158 bits (1168), Expect = 0.0 Identities = 1306/1373 (95%), Gaps = 8/1373 (1%) Strand=Plus/Plus Query 1 TTGGTTGCCATTTGGTTGTGTAGAAGCAATCACCCATTTGCTTTATC-----CG-AGGTA 54 |||||||||||||||| |||||||||||||||| ||||||||||||| | ||||| Sbjct 52 TTGGTTGCCATTTGGTAGTGTAGAAGCAATCACTCATTTGCTTTATCGGAGTTGCAGGTA 111 Query 55 CTTAAGGCTTTGTCTTGGCATCCTCGTCCTCTTCAGCAAAACTCGTCTCTCTTGCACTCC 114 ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| Sbjct 112 CTTAAGGCTTTGTCTTGGCTTCCTCGTCCTCTTCAGTTAAACTCGTCTCTCTTGCACTCC 171 Query 115 AAAAAGCAACCATGTCTGCTTTTGTCGGCAAATACGCAGATGAGCTGATAAAGACGGCTA 174 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 172 GAAAAGCAACCATGTCTGCTTTTGTCGGCAAATACGCAGATGAGCTGATTAAGACGGCTA 231 Query 175 AGTACATTGCCACACCGGGAAAGGGCATTTTGGCAGCAGACGAGAGCACGGGAACTATTG 234 |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| || | Sbjct 232 AGTACATTGCAACACCGGGAAAGGGCATTTTGGCAGCAGACGAGAGCACAGGAACCATCG 291 Query 235 GGAAACGATTCGCCAGCATCAATGTTGAGAACATTGAGTCCAACCGCCAAGCTCTCCGTG 294 ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| Sbjct 292 GGAAACGATTCGCCAGCATCAATGTCGAGAACGTTGAGTCCAACCGCCAAGCTCTCCGTG 351 Query 295 AGCTCCTCTTCACGTCCCCTGGCACTTTCCCTTGCCTCTCCGGTGTTATCCTCTTCGAGG 354 ||||||||||||| ||||||||| |||||||||||||||| ||||||||||| || |||| Sbjct 352 AGCTCCTCTTCACTTCCCCTGGCGCTTTCCCTTGCCTCTCTGGTGTTATCCTTTTTGAGG 411 Query 355 AAACCCTCTACCAGAAAACCACGGATGGCAAACCCTTCGTTGAGCTCCTCATGGAAAACG 414 |||||||||||||||||||| | |||||||||||||| ||||| ||||||||||| |||| Sbjct 412 AAACCCTCTACCAGAAAACCTCTGATGGCAAACCCTTTGTTGATCTCCTCATGGAGAACG 471 Query 415 GAGTTATCCCTGGAATCAAAGTGGACAAGGGTGTGGTTGATCTAGCAGGAACCAATGGCG 474 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 472 GAGTTATCCCTGGAATCAAAGTGGACAAGGGTGTGGTTGATCTAGCAGGGACCAACGGCG 531 Query 475 AGACCACTACTCAGGGTCTAGATTCACTTGGTGCACGTTGCCAGGAGTATTACAAGGCAG 534 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 532 AGACCACTACTCAGGGTCTAGATTCGCTTGGTGCACGTTGCCAGGAGTATTACAAGGCAG 591 Query 535 GAGCTCGGTTTGCAAAATGGCGTGCAGTCCTCAAGATTGGGGCCACCGAGCCAAGCGAGC 594 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 592 GAGCCCGGTTTGCAAAATGGCGTGCAGTCCTCAAGATTGGGGCCACCGAGCCAAGCGAGC 651 Query 595 TCTCTATCCAAGAGAACGCCAAGGGGCTAGCCCGCTATGCCATCATCTGCCAGGAGAATG 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 652 TCTCTATCCAAGAGAACGCCAAGGGGCTAGCCCGCTATGCCATCATCTGCCAGGAGAACG 711 Query 655 GACTCGTCCCAATCGTCGAGCCAGAGGTACTGACCGACGGGAGCCATGACATCAAGAAAT 714 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 712 GACTGGTCCCGATCGTCGAGCCAGAGGTACTGACCGACGGGAGCCATGACATCAAGAAAT 771 Query 715 GTGCAGCGGTGACCGAGACCGTTCTTGCTGCCGTGTACAAGGCCTTGAACGACCACCATG 774 |||| || ||||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 772 GTGCGGCCGTGACGGAGACAGTTCTTGCTGCCGTGTACAAGGCCTTGAACGACCACCATG 831 Query 775 TCCTCCTCGAAGGCACTCTGCTTAAACCGAACATGGTCACTCCCGGCTCTGACAGCCCAA 834 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 832 TCCTCCTCGAAGGCACTCTGCTTAAACCGAACATGGTCACTCCCGGCTCTGACAGCCCAA 891 Query 835 AGGTTGCACCGGAAGTGATAGCGGAATACACAGTGACTGCTCTGCGCCGCACAGTCCCAC 894 |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 892 AGGTTGCAGCTGAAGTGATAGCGGAATACACAGTGACTGCTCTGCGCCGCACAGTCCCAC 951 Query 895 CTGCAGTTCCAGGAATCGTGTTCCTCTCAGGCGGACAGAGTGAAGAGGAAGCAACACTAA 954 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 952 CAGCGGTTCCAGGAATCGTGTTCCTCTCAGGCGGACAGAGTGAAGAGGAAGCAACACTAA 1011 Query 955 ATCTGAACGCAATGAACAAGCTCGATGTGTTGAAGCCATGGACTCTCACTTTCTCATTTG 1014 |||||||||||||||||||||| ||||| |||||||||||||| || |||||||| |||| Sbjct 1012 ATCTGAACGCAATGAACAAGCTTGATGTATTGAAGCCATGGACGCTGACTTTCTCTTTTG 1071 Query 1015 GCCGAGCCCTCCAACAAAGCACTCTCAAGGCTTGGGCAGGTAAGACAGAGAATGTAGCCA 1074 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 1072 GCCGAGCCCTCCAACAAAGCACTCTCAAGGCTTGGGCAGGTAAGACCGAGAACGTAGCCA 1131 Query 1075 AAGCTCAGGCCACTTTCCTGACCAGGTGCAAGGGTAACTCGGACGCTACCCTCGGGAAAT 1134 ||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 1132 AAGCTCAAGCCACTTTCCTGACAAGGTGCAAGGGTAACTCGGATGCTACCCTCGGGAAAT 1191 Query 1135 ACACCGGCGGGGCTTCTGGTGACTCGGCCGCCTCTGAGAGCTTGTATGAGGAAGGATACA 1194 |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1192 ACACCGGCGGGGCTTCAGGTGACTCGGCCGCCTCTGAGAGCTTGTATGAGAAAGGATACA 1251 Query 1195 AGTATTAGGAGCGTTTAAATACGGGTGTCGCCTTTTATACGATTTGAATATATGTCAAAT 1254 |||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||| Sbjct 1252 AGTATTAGGAGCGTTTAA-TACGGGTGTCGTCTTTTATACGGTTTGAATATATGTCAAAT 1310 Query 1255 GTTTCGTAGGCGTTTAACTGTTTAAATTTTTATCGATTTGGTTTAGCGTCTGTGTAATGT 1314 ||||||| ||||||||||||||||||| |||||||||||||||||| | ||||||||||| Sbjct 1311 GTTTCGTGGGCGTTTAACTGTTTAAATGTTTATCGATTTGGTTTAGTGACTGTGTAATGT 1370 Query 1315 TCTTAAACTGTGTTGTGTTTTTTGTGATGGTTTCTATAATATTTTCGCGCCAT 1367 |||||||||||||||||||||| |||||| |||||||| |||||||||||||| Sbjct 1371 TCTTAAACTGTGTTGTGTTTTT-GTGATGATTTCTATAGTATTTTCGCGCCAT 1422 > Ahg492160 jgi|Araly1|492160|fgenesh2_kg.7__1593__AT4G26520.1 Length=1397 Score = 1524 bits (825), Expect = 0.0 Identities = 1068/1186 (90%), Gaps = 14/1186 (1%) Strand=Plus/Plus Query 104 TCTT-GCACTCCAAAAAGCAACCATGTCTGCTTTTGTCGGCAAATACGCAGATGAGCTGA 162 |||| ||| |||||| |||||| |||||||||||||| |||||||||||||||||||||| Sbjct 136 TCTTGGCA-TCCAAACAGCAACGATGTCTGCTTTTGTTGGCAAATACGCAGATGAGCTGA 194 Query 163 TAAAGACGGCTAAGTACATTGCCACACCGGGAAAGGGCATTTTGGCAGCAGACGAGAGCA 222 | |||||||| ||||||||||| || ||||||| |||||||||||| ||||||||||||| Sbjct 195 TCAAGACGGCCAAGTACATTGCAACGCCGGGAAGGGGCATTTTGGCGGCAGACGAGAGCA 254 Query 223 CGGGAACTATTGGGAAACGATTCGCCAGCATCAATGTTGAGAACATTGAGTCCAACCGCC 282 | | ||| || |||||||||||||| | ||||||||||||||||||| ||||||||||| Sbjct 255 CAGAAACCATCGGGAAACGATTCGCTGGAATCAATGTTGAGAACATTGTGTCCAACCGCC 314 Query 283 AAGCTCT-CCGTGAGCTCCTCTTCACGTCCCCTGGCACTTTCCCTTGCCTCTCCGGTGTT 341 ||||| | ||| |||||||||||||| |||||||||| || |||||||||||| |||||| Sbjct 315 AAGCT-TACCGAGAGCTCCTCTTCACTTCCCCTGGCAGTTACCCTTGCCTCTCTGGTGTT 373 Query 342 ATCCTCTTCGAGGAAACCCTCTACCAGAAAACCACGGATGGCAAACCCTTCGTTGAGCTC 401 || |||||||||||||||||||||||||||||| | ||||| ||||||||||| || ||| Sbjct 374 ATACTCTTCGAGGAAACCCTCTACCAGAAAACCTCTGATGGAAAACCCTTCGTCGATCTC 433 Query 402 CTCATGGAAAACGGAGTTATCCCTGGAATCAAAGTGGACAAGGGTGTGGTTGATCTAGCA 461 |||||||| ||||| |||||||| ||||||||||||||||||||| |||||||||||||| Sbjct 434 CTCATGGAGAACGGCGTTATCCCCGGAATCAAAGTGGACAAGGGTTTGGTTGATCTAGCA 493 Query 462 GGAACCAATGGCGAGACCACTACTCAGGGTCTAGATTCACTTGGTGCACGTTGCCAGGAG 521 |||||||| |||||||||||||||||||||||||| || ||||||||||| ||||||||| Sbjct 494 GGAACCAACGGCGAGACCACTACTCAGGGTCTAGACTCGCTTGGTGCACGGTGCCAGGAG 553 Query 522 TATTACAAGGCAGGAGCTCGGTTTGCAAAATGGCGTGCAGTCCTCAAGATTGGGGCCACC 581 ||||||||||||||||| |||||||| |||||||||||| || |||||||||||||||| Sbjct 554 TATTACAAGGCAGGAGCCCGGTTTGCTAAATGGCGTGCATTCTTCAAGATTGGGGCCACT 613 Query 582 GAGCCAAGCGAGCTCTCTATCCAAGAGAACGCCAAGGGGCTAGCCCGCTATGCCATCATC 641 |||||||||| ||||| ||||||||| ||||||||| |||||||||||||||||||||| Sbjct 614 GAGCCAAGCGCTCTCTCGATCCAAGAGGACGCCAAGGTGCTAGCCCGCTATGCCATCATC 673 Query 642 TGCCAGGAGAATGGACTCGTCCCAATCGTCGAGCCAGAGGTACTGACCGACGGGAGCCAT 701 ||||||||||| ||||| ||||| ||||||||||||||||| ||||||| |||||||| Sbjct 674 TGCCAGGAGAACGGACTTGTCCCGATCGTCGAGCCAGAGGTGCTGACCGGTGGGAGCCAC 733 Query 702 GACATCAAGAAATGTGCAGCGGTGACCGAGACCGTTCTTGCTGCCGTGTACAAGGCCTTG 761 ||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||| Sbjct 734 GACATCAAGAAATGTGCGGCGGTGACCGAGACGGTTCTTGCTGCCGTGTTCAAGGCCTTG 793 Query 762 AACGACCACCATGTCCTCCTCGAAGGCACTCTGCTTAAACCGAACATGGTCACTCCCGGC 821 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 794 AACGACCACCATGTCCTCCTCGAAGGCACTCTGCTTAAACCTAACATGGTCACTCCCGGC 853 Query 822 TCTGACAGCCCAAAGGTTGCACCGGAAGTGATAGCGGAATACACAGTGACTGCTCTGCGC 881 || |||||||||||||||||||||||||| || || |||||||| ||||||||||||||| Sbjct 854 TCCGACAGCCCAAAGGTTGCACCGGAAGTAATCGCAGAATACACGGTGACTGCTCTGCGC 913 Query 882 CGCACAGTCCCACCTGC-AGTTCCAGGAATCGTGTTCCTCTCAGGCGGACAGAGTGAAGA 940 |||||||||||||| || | |||| |||||||||||||||||||||| |||| | ||||| Sbjct 914 CGCACAGTCCCACCAGCTA-TTCCGGGAATCGTGTTCCTCTCAGGCGTACAGCGGGAAGA 972 Query 941 GGAAGCAACACTAAATCTGAACGCAATGAACAAGCTCGATGTGTTGAAGCCATGGACTCT 1000 | |||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| || Sbjct 973 GCAAGCGACACTAAATCTAAACGCAATGAACAAGCTTGATGTGTTGAAGCCATGGACGCT 1032 Query 1001 CACTTTCTCATTTGGCCGAGCCCTCCAACAAAGCACTCTCAAGGCTTGGGCAGGTAAGAC 1060 ||||||||| |||||| |||||||||| |||||| |||||||||||||||| |||||||| Sbjct 1033 CACTTTCTCTTTTGGCGGAGCCCTCCAGCAAAGCGCTCTCAAGGCTTGGGCCGGTAAGAC 1092 Query 1061 AGAGAATGTAGCCAAAGCTCAGGCCACTTTCCTGACCAGGTGCAAGGGTAACTCGGACGC 1120 ||||| |||||||||||||| |||| ||||||||||||||||||| ||||||||| || Sbjct 1093 CGAGAACGTAGCCAAAGCTCAAGCCAAGTTCCTGACCAGGTGCAAGGCTAACTCGGATGC 1152 Query 1121 TACCCTCGGGAAATACACCGGCGGGGCTTCTGGTGACTCGGCCGCCTCTGAGAGCTTG-T 1179 |||||||||||||||||||||| |||||||||||||||| |||||||| |||| |||| | Sbjct 1153 TACCCTCGGGAAATACACCGGCTGGGCTTCTGGTGACTCAGCCGCCTCCGAGAACTTGGT 1212 Query 1180 ATGAGGA-AGGATACAAGTATTAGGAGCGTTTAA-ATACGGGTGT-CGCCTTTTATACGA 1236 || | | |||||||| ||| ||||| |||| | | ||||| || ||||||| || || Sbjct 1213 -TGTG-ATAGGATACAGGTACTAGGATTGTTTGAGA-ACGGGCGTTCGCCTTTGATGCGG 1269 Query 1237 TTTGAATATATGTCAAATGTTTCGTAGGCGTT-TAACTGTTTAAAT 1281 ||||| |||||||| ||| |||||| || ||| ||||||||| ||| Sbjct 1270 TTTGAGTATATGTCTAATATTTCGTTGGTGTTGTAACTGTTTGAAT 1315 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51351569199 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5