BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26550.1
Length=1055
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492154 jgi|Araly1|492154|fgenesh2_kg.7__1587__AT4G26550.1 1330 0.0
Ahg495689 jgi|Araly1|495689|fgenesh2_kg.8__1505__AT5G56020.1 640 0.0
> Ahg492154 jgi|Araly1|492154|fgenesh2_kg.7__1587__AT4G26550.1
Length=1029
Score = 1330 bits (720), Expect = 0.0
Identities = 909/995 (91%), Gaps = 34/995 (3%)
Strand=Plus/Plus
Query 1 TCTTCTTCTTCCCGAGTAAGTAATTCTTTAGCTGCGGCGTTTACCAAAAAACCTTAAAAC 60
||||||||||||||||||| || || |||||||||||||||| | | ||||
Sbjct 1 TCTTCTTCTTCCCGAGTAAATATTTTTTTAGCTGCGGCGTTT--------A-C---AAAC 48
Query 61 GTCAACGAAAAATATCCGATCGCCGGCGTTCTGGTCTATCATTGTTTGCTTTCCTTGAAG 120
||| ||||||||| ||||||||||||| ||||||||| ||| || |||||| || |||||
Sbjct 49 GTCCACGAAAAATCTCCGATCGCCGGCTTTCTGGTCTTTCACTGCTTGCTTCCCCTGAAG 108
Query 121 ATCCCGAAACC---------CAAAAA-ATGTCACAAGGATGGTTTTCGATGGGCGGGAGT 170
|| ||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 109 ATTTCGAAACCAAGTTAAAAAAAAAATATGTCACAAGGATGGTTTTCGATGGGCGGGAGT 168
Query 171 AGCACCGTAGAT---CAGCAGCAGCAATCGGGTTCGTCTCTGCTTGCGGATTGGAATTCT 227
|||| || |||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 169 AGCAGCGGAGATCAGCAGCAGCAGCAATCGGGTTCATCTCTGCTCGCGGATTGGAATTCT 228
Query 228 TACGCAGCCTCTAGAGATTTCGAGGAAAGCGGCGGAAGCTTCGGCTTTGATATCGAATCC 287
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 229 TACGCAGCCTCTAGAGATTTCGAGGAAAGTAGCGGAAGCTTCGGTTTTGATATCGAATCC 288
Query 288 GCCGTTAGATCTGCCAATGACACTGTTTCGGGCACCTTCAGTGTGGTTTCAAAAGGAGTT 347
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 289 GCCGTTAGATCTGCCAATGACACTGTTTCTGGCACCTTCAGTGTGGTTTCAAAGGGAGTT 348
Query 348 AGAGATATTCCAGGGAGCTTGCAGTCAGCAACAAGTAGTATGCCTTCAGGAAAAGCGCTC 407
|||||||| || |||||| ||||||||||||| || ||||||||||||||||||||||||
Sbjct 349 AGAGATATCCCGGGGAGCCTGCAGTCAGCAACCAGCAGTATGCCTTCAGGAAAAGCGCTC 408
Query 408 ATGTATTTCGGTTTACTTCTCGCAAGTGGTGTTTTCTTCATCTTCATTGCCTTCACAATG 467
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 409 ATGTATTTCGGTTTACTTCTCGCAAGTGGTGTATTCTTCATCTTCATTGCCTTCACAATG 468
Query 468 TTTCTTCCAGTCATGGTGCTTATGCCACAGAAATTTGCCATTTGTTTCACCCTTGGATGT 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 TTTCTTCCAGTCATGGTGCTTATGCCACAGAAATTTGCCATTTGTTTCACCCTTGGATGT 528
Query 528 GGATTCATCATTGGATCCTTCTTCGCACTTCGTGGCCCTAAAAATCAGCTCGCACACATG 587
||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 529 GGATTTATCATTGGATCCTTCTTCGCACTTCGTGGCCCAAAAAACCAGCTCGCACACATG 588
Query 588 TCTTCGATGGAGAGGCTTCCTTCAACCCTAGGTTTCATTGCTACCATGGTTGGTACCATA 647
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 589 TCATCGATGGAGAGGCTTCCTTCAACCCTAGGTTTCATTGCCACCATGGTTGGTACCATA 648
Query 648 TACGTATCAATGGTTCTCCACAGCTACATTCTCTCGGTGCTCTTCTCAGTGTTACAGGTT 707
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 649 TATGTATCGATGGTTCTCCACAGCTACATTCTCTCGGTGCTCTTCTCTGTGTTACAGGTT 708
Query 708 CTTGCGCTGGTTTACTACTGTATATCCTACTTCCCTGGTGGATCATCAGGCATGAGGTTC 767
||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 709 CTTGCACTGGTTTATTACTGTATATCCTACTTCCCTGGTGGATCATCCGGCATGAGGTTC 768
Query 768 CTCAGTTCTGCTCTCACCTCATCTGCGCTAAGAGTTTTCGGGAGATAAGCTTTCGTAGCC 827
||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| ||||
Sbjct 769 CTCAGTTCTGCTCTCACCTCATCGGCGTTAAGAGTTTTCGGGAGATGAGCTTTCACAGCC 828
Query 828 AATCTGGGAGAGAGAACAATACTT-----GTCGGTGTACAAAGAAAGATGTC-GAAGCGT 881
|||||||||||| ||||||||||| || |||||||||||||||||||| || ||||
Sbjct 829 AATCTGGGAGAGGGAACAATACTTTACTTGTTGGTGTACAAAGAAAGATGTCAGA-GCGT 887
Query 882 TTTTTGGTATACTCTTTAACATAGATTTGA-TGAAATCCCTCGAAAAGATAAATGATCGT 940
|||| ||||||||||||||||||||||||| ||||| ||| |||||||| ||||||||||
Sbjct 888 TTTT-GGTATACTCTTTAACATAGATTTGAATGAAAACCCCCGAAAAGACAAATGATCGT 946
Query 941 GAAGGAAATGTTTAGTGAAGAACCCAATTGATGTT 975
|||||||||||||| |||||||||||| |||||||
Sbjct 947 GAAGGAAATGTTTAATGAAGAACCCAAGTGATGTT 981
> Ahg495689 jgi|Araly1|495689|fgenesh2_kg.8__1505__AT5G56020.1
Length=803
Score = 640 bits (346), Expect = 0.0
Identities = 536/626 (86%), Gaps = 19/626 (3%)
Strand=Plus/Plus
Query 202 CGTCTCTGCTTGCGGATTGGAATTCTTACGCAGCCTCTAGAGATTTCGAGGAAAG-CGGC 260
|||||||||| || ||||||||||| |||||||| || |||||||| || | ||| | |
Sbjct 172 CGTCTCTGCTAGCTGATTGGAATTCCTACGCAGCTTCGAGAGATTTTGAAG-AAGACCCC 230
Query 261 GGAAGC-TTCGGCTTTGATATCGAATCCGCCGTTAGATCTGCCAATGACACTGTTTCGGG 319
|| ||| || ||||| ||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 231 GG-AGCTTTAGGCTTCGATATCGAATCCGCCGTTAGATCTGCCAACGACACTGTCTCCGG 289
Query 320 CACCTTCAGTGTGGTTTCAAAAGGAGTTAGAGATATTCCAGGGAGCTTGCAGTCAGCAAC 379
||||| | ||| ||||| ||||||||||||| | | | | | ||||||| |||||
Sbjct 290 AACCTTTAATGTTGTTTCGAAAGGAGTTAGAG--A-T--A---A-CCTGCAGTCTGCAAC 340
Query 380 AAGTAGTATGCCTTCAGGAAAAGCGCTCATGTATTTCGGTTTACTTCTCGCAAGTGGTGT 439
||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||
Sbjct 341 AAGTAGTATGCCTTCAGGAAAAGCGTTGATGTATTTCGGTTTACTTCTAGCAAGTGGTGT 400
Query 440 TTTCTTCATCTTCATTGCCTTCACAATGTTTCTTCCAGTCATGGTGCTTATGCCACAGAA 499
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 401 TTTCTTCATCTTCATTGCCTTCACCATGTTTCTTCCAGTCATGGTGCTTATGCCACAGAA 460
Query 500 ATTTGCCATTTGTTTCACCCTTGGATGTGGATTCATCATTGGATCCTTCTTCGCACTTCG 559
||||| |||||||| ||||||||||||||||| ||||| ||||| |||||||| |||||
Sbjct 461 GTTTGCAATTTGTTTTACCCTTGGATGTGGATTTATCATCGGATCTTTCTTCGCTCTTCG 520
Query 560 TGGCCCTAAAAATCAGCTCGCACACATGTCTTCGATGGAGAGGCTTCCT-TCAACCCTAG 618
|||||| ||||||| ||||| |||||||| ||| |||||||||||| | ||| |||
Sbjct 521 TGGCCCGCAAAATCAACTCGCTCACATGTCATCGGCAGAGAGGCTTCCTCT-AACTTTAG 579
Query 619 GTTTCATTGCTACCATGGTTGGTACCATATACGTATCAATGGTTCTCCACAGCTACATTC 678
||||||| || ||||||||||| |||||||| || || ||||| ||||| || |||||||
Sbjct 580 GTTTCATAGCCACCATGGTTGGCACCATATATGTCTCGATGGTGCTCCATAGTTACATTC 639
Query 679 TCTCGGTGCTCTTCTCAGTGTTACAGGTTCTTGCGCTGGTTTACTACTGTATATCCTACT 738
|||| ||| | ||||| | ||||||||| |||| |||| |||||||||| |||||||||
Sbjct 640 TCTCTGTGATTTTCTCTGCATTACAGGTTGTTGCACTGGCTTACTACTGTGTATCCTACT 699
Query 739 TCCCTGGTGGATCATCAGGCATGAGGTTCCTCAGTTCTGCTCTCACCTCATCTGCGCTA- 797
|||||||||||||||| || |||| ||||||||||||| |||| ||||| |||| ||
Sbjct 700 TCCCTGGTGGATCATCGGGAATGAAGTTCCTCAGTTCTACTCTTACCTCCTCTGT-CTTC 758
Query 798 AGAGT-TTTCGGGAGATAAGCTTTCG 822
||| | ||| ||||||| ||||||||
Sbjct 759 AGAATGTTT-GGGAGATGAGCTTTCG 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39266604510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5