BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26750.1
Length=1561
Score E
Sequences producing significant alignments: (Bits) Value
Ahg492127 jgi|Araly1|492127|fgenesh2_kg.7__1560__AT4G26750.1 2224 0.0
> Ahg492127 jgi|Araly1|492127|fgenesh2_kg.7__1560__AT4G26750.1
Length=1515
Score = 2224 bits (1204), Expect = 0.0
Identities = 1382/1464 (94%), Gaps = 28/1464 (2%)
Strand=Plus/Plus
Query 1 GGGATTTTAGAGGTCCTTTCTGCGACGTCGTTTCTAGTTTGCAATCAGAAGCGCGTTAAA 60
||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1 GGGATTTTAGAGGCCCTCTCTGCGACGTCGTTTATAGTTTGCAATCAGAAGCGCGTCAAA 60
Query 61 TACAGGAAAATTTCTTGAGCTGTTTTGTCTTAACAAATCAATCGGAGAAAAAGCTACGGA 120
|| ||||||||||||||||| | ||||| | || | | | ||| | | |
Sbjct 61 TAAAGGAAAATTTCTTGAGC--TCTTGTC-T-----GTC--T--TA-ACAAA--T-C--A 102
Query 121 GCTCGAGAGAAGAGAGAATCTATGTCGAACCCAAACGAACCAGCCAGGGCTCTTCTGCCT 180
||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 103 -ATCG-GAGAAGAGAGAATCTATGTCGAACGCAAACGAACCAGCCAGGGCTCTTCTACCT 160
Query 181 TACCTGCAACGTGCCGATGAGCTGCAGAAGCATGAACCACTTGTTGCTTATTACTGTCGG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 TACCTGCAACGTGCCGATGAGCTGCAGAAGCATGAACCACTTGTTGCTTATTACTGTCGG 220
Query 241 CTATATGCAATGGAACGAGGATTGAAGATTCCGCAGAGCGAGAGAACTAAGACCACCAAT 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 CTATATGCCATGGAACGAGGATTGAAGATTCCGCAGAGCGAGAGAACTAAGACCACCAAT 280
Query 301 TCGATTCTCATGTCTCTCATTAATCAACTCGAAAAGGATAAAAAATCATTGACTCTGTCC 360
|| |||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||
Sbjct 281 TCAATTCTCATGTCTCTCATTAATCAACTTGAAAAGGATAAGAAATCATTGAATCTGTCC 340
Query 361 CCAGATGACAATATGCATGTGGAGGGGTTTGCACTT-AGTGTCTTTGCTAAGGCAGACAA 419
||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 341 CCAGATGACAATATGCATGTGGAGGGGTTTGCA-TTAAGTGTCTTTGCAAAGGCAGACAA 399
Query 420 GCAGGATCGTGCAGGAAGAGCAGACTTGGGCACTGCCAAAACTTTTTATGCTGCGAGC-A 478
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
Sbjct 400 GCAGGATCGTGCAGGAAGAGCTGACTTGGGCACTGCCAAAACTTTTTATGCTGCGA-CAA 458
Query 479 TCTTCTTTGAAATTCTGAGCCAGTTTGGTCCC-GTACCTCCTGATATAGAGCAGAAACAC 537
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 459 TCTTCTTTGAAATTCTGAGCCAGTTTGG-CCCTGTACCTCCTGATATAGAGCAGAAACAG 517
Query 538 AAGTATGCTGCTTGGAAGGCTGCTGACATAAGGAAAGCCATTAAAGAAGGAAGGAAGCCC 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 518 AAGTATGCTGCTTGGAAGGCTGCTGACATAAGGAAAGCCATTAAAGAAGGAAGGAAGCCC 577
Query 598 ACTCCAGGTGATCCTGTGGATGATGATACTGATTTATCCATCCCATCAAGCGGTCCTAGT 657
||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||
Sbjct 578 ACTCCAGGTGATCCTGTTGATGATGAAAATGATTTATCCATCCCATCAAGCGGTCCTAGT 637
Query 658 GGCTCCTATGATCACAGTGCAAGTGATACCAACACAACAAGTCATCATAGAACAGAGCTT 717
||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||| |
Sbjct 638 GGCTCCTATGATCACGGTGCAAGTGATTCCAACACAACAAATCATCATAGAACAGAGCCT 697
Query 718 GATCCACCCCATGACTCGAATGATGACTCCAGCCACCATCAATTCCCTGAAGTGCCACAA 777
|||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 698 GATCCATCCCATGACTCGAATGATGACTCCAGCCAACATCACTTCCCTGAAGTGCCACAA 757
Query 778 CACCCTCTACCTCCCAGGTTTTATGACAATCCGACCAACGATTATCCCGCAGATGTCCCA 837
||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||
Sbjct 758 CACCCTCTACCTCCCAGGTTTCATGACAATCCTACCAACGATTATCCCACAGATGTCCCG 817
Query 838 CCTCCACCACCGTCTTCTTACCCTTCCAACGATCAT-CTTCCCCCTCCCACAGGACCATC 896
|||||||||||||||||||||||||||||||||| | | |||||||||||| ||||||||
Sbjct 818 CCTCCACCACCGTCTTCTTACCCTTCCAACGATC-TCCATCCCCCTCCCACGGGACCATC 876
Query 897 AGACTCCCCTTACCCGCATCCTTACAGTCATCAACCATACCACCAAGACCCGCCAAAACA 956
|||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 877 AGACTCCCCTTACCAGCATCCTTACAGTCATCAACCATACCACCAAGACCCGTCACAACA 936
Query 957 CATGCCGCCACCGCAAAACTACTCATCTCATGAGCCTTCTCCAAATTCTCTCCCTAATTT 1016
|||||||||||| |||||||||||| | |||||||||||||||||||||||||| |||||
Sbjct 937 CATGCCGCCACCACAAAACTACTCAGCCCATGAGCCTTCTCCAAATTCTCTCCCCAATTT 996
Query 1017 CCAATCTTATCCTAGCTTTAGTGAGAGCAGCCTCCCATCCACTTCTCCCCACTACCCTTC 1076
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 997 CCAATCTTATCCTAGCTTTAGTGAGAGCAGCCTCCCATCCACTCCTCCCCACTACCCTTC 1056
Query 1077 TCACTACCAAAACCCAGAACCTTACTAttcttctccgcactctgcacctgctccttcttc 1136
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1057 TCACTACCAAAACCCAGAACCTTACTATTCTTCTCCGCATTCCGCACCTGCTCCTTCTTC 1116
Query 1137 cacaagcttctcctctgctcctcctcctccACCTTACTCATCAAACGGGCGTATCAATAT 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 CACAAGCTTCTCCTCTGCTCCTCCTCCTCCACCTTACTCATCAAACGGGCGTATCAATAT 1176
Query 1197 TGCTCCCGTGCTAGATCCTGCACCGAGTTCAGCTCAGAAGTACCATTACGATAGCAGCTA 1256
|||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1177 TGCTCCTGTGCTAGATCCTGCACCGAGTCCAGCTCAGAAGTACCATTACGACAGCAGCTA 1236
Query 1257 CCAGCCAGGGCCTGAGAAGGTTGCAGAGGCACTCAAGGCTGCTAGATTCGCTGTGGGAGC 1316
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1237 CCAGCCAGGGCCTGAGAAGGTTGCAGAGGCACACAAGGCTGCTAGATTCGCTGTGGGAGC 1296
Query 1317 TTTGGCTTTTGATGAAGTCTCGACTGCTGTAGAACATCTCAAGAAGTCACTTGAGTTGCT 1376
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1297 TTTGGCTTTTGATGAAGTCTCGACTGCTGTAGAACATCTGAAGAAGTCACTTGAGTTGCT 1356
Query 1377 AACAAATCCATCGGCCGGTGCCGGTCACTGAATTTTATATCTAATCTATGACACTTGGGG 1436
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1357 AACAAATCCATCGGCCGGTGCCGGTCACTGAATTTTATATTTAATCTATGAAACTTGGGG 1416
Query 1437 TTGATGTTAGTGCGTGTGTGTGTT 1460
|||||||||||| |||||||||||
Sbjct 1417 TTGATGTTAGTGTGTGTGTGTGTT 1440
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58468526075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5