BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G26850.1 Length=2084 Score E Sequences producing significant alignments: (Bits) Value Ahg492115 jgi|Araly1|492115|fgenesh2_kg.7__1548__AT4G26850.1 3001 0.0 Ahg950164 jgi|Araly1|950164|scaffold_802051.1 785 0.0 > Ahg492115 jgi|Araly1|492115|fgenesh2_kg.7__1548__AT4G26850.1 Length=1994 Score = 3001 bits (1625), Expect = 0.0 Identities = 1882/1999 (94%), Gaps = 46/1999 (2%) Strand=Plus/Plus Query 68 aaaCCCACATCAAAAGATCTCTCATTTATTCGTTTCGTTTCTGCTGTTTTGAGTGTCGGG 127 ||||||||||||||||||||||| || |||||||||| |||||||||||||||||| || Sbjct 24 AAACCCACATCAAAAGATCTCTC-CTT-TTCGTTTCGTGTCTGCTGTTTTGAGTGTC-GG 80 Query 128 TTCGTTTTAGCTGTAATCtttttttCCGGCGTTCGATTTGAAAAAATCCGGGGAACAGGT 187 | || | | ||||||||||||||||||||||||||||||| ||||||| Sbjct 81 ---G--TT--C-G--------TTTTCCGGCGTTCGATTTGAAAAAATCCGGGAAACAGGT 124 Query 188 GATCGGAATCACGGCTATACACGGGATATCACGGGGTGTTAGCTCACATGTCCATATTGT 247 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 125 GATCGGAATCACGGCTATACACGGGATATCACGGGGTGTTAGCTCTCATGTCCATATTGT 184 Query 248 CCGACAGAAGGGTTGTTTAATCGAAACTAATCCTTTGCCGCACGGAGGACGTGGAGCTCT 307 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 185 TCGACAGAAGGGTTGTTTAATCGAAACTAATCCTTTGCCGCACGGAGGACGTGGAGCTCT 244 Query 308 GCCGTCTGAAGGCGGCAGCCCTTCCGATCTCCTCTTTCTCGCCGGTGGCGGTTCCAGctt 367 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 245 GCCGTCTGAAGGCGGCAGCCCTTCCGATCTCCTCTTTCTCGCCGGAGGCGGTTCCACCTT 304 Query 368 taacttcttttcctttaggttttaggagttaggg-t-ttgttagtgttttttccttcttc 425 ||| |||| |||||||||||||||||||||||| | || |||| ||||||||||| || Sbjct 305 CAACCTCTTGTCCTTTAGGTTTTAGGAGTTAGGGTTGTTATTAGAGTTTTTTCCTT-TT- 362 Query 426 tttttttggtgctcttgaatcgcttttttcttggggg-aagttttttc-ttttgctcttc 483 ||||||| |||| ||||||||| | ||||||||||| || ||||||| ||||||||| | Sbjct 363 TTTTTTTTCTGCTGTTGAATCGC-TCTTTCTTGGGGGAAACTTTTTTCTTTTTGCTCTAC 421 Query 484 gaaa-tttgtcttttttgAGAATGTTGAAAATCAAAAGAGTTCCGACCGTTGTTTCGAAC 542 |||| ||| | ||||| |||||||||||||||||| |||||||||||||| || |||||| Sbjct 422 GAAAGTTTTTGTTTTTGGAGAATGTTGAAAATCAAGAGAGTTCCGACCGTCGTATCGAAC 481 Query 543 TACCAGAAGGACGATGGAGCGGAGGATCCCGTCGGCTGTGGACGGAATTGCCTCGGCGCT 602 ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||| Sbjct 482 TACCAGAAGGACGATGGAGCGGATGATTCCGTCGGCTGTGGACGGAATTGCCTTGGCGCT 541 Query 603 TGTTGCCTTAACGGGGCTAGGCTTCCATTGTATGCATGTAAGAATCTGGTA-AAAT-C-- 658 |||||| |||||||||||||||||||||||||||||||||||||| ||| | |||| | Sbjct 542 TGTTGCATTAACGGGGCTAGGCTTCCATTGTATGCATGTAAGAATATGG-AGAAATCCGG 600 Query 659 CG--G-AGAGAAGCTTGTAATCAGTCATGAGGCTATAGAGCCTCCTGTAGCTTTTCTCGA 715 || | |||||||||||||||||| |||| |||| |||||||||||| ||||||||||| Sbjct 601 CGCCGTGGAGAAGCTTGTAATCAGTAATGAAGCTAAAGAGCCTCCTGTGGCTTTTCTCGA 660 Query 716 GTCCCTTGTTCTCGGAGAGTGGGAGGATAGGTTCCAAAGAGGACTTTTTCGCTATGATGT 775 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 GTCCCTCGTTCTCGGAGAGTGGGAGGATAGGTTCCAAAGAGGACTTTTTCGCTATGATGT 720 Query 776 CACTGCCTGCGAAACCAAAGTTATCCCGGGGAAGTATGGTTTCGTTGCTCAGCTTAACGA 835 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 CACTGCCTGCGAAACCAAAGTTATCCCGGGGAAGTATGGTTTCGTTGCTCAGCTTAACGA 780 Query 836 GGGTCGTCACTTGAAGAAGAGGCCAACTGAGTTCCGTGTAGATAAGGTGTTGCAGTCTTT 895 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 GGGTCGTCACCTGAAGAAGAGGCCAACTGAGTTCCGTGTAGATAAGGTGTTGCAGTCTTT 840 Query 896 TGATGGCAGCAAATTCAACTTCACTAAAGTTGGCCAAGAAGAGTTGCTCTTCCAGTTTGA 955 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 TGATGGCACCAAATTCAACTTCACTAAAGTTGGCCAAGAAGAGTTGCTCTTCCAGTTTGA 900 Query 956 AGCTGGTGAAGATGCCCAAGTTCAGTTCTTCCCTTGCATGCCTATTGACCCTGAGAATTC 1015 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 901 AGCTGGTGAAGATGCCCAAGTTCAGTTCTTCCCTTGCATGCCTCTTGACCCTGAGAATTC 960 Query 1016 TCCCAGTGTTGTTGCCATCAATGTTAGTCCGATAGAGTATGGCCATGTGCTGCTGATTCC 1075 ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 961 TCCCAATGTTGTTGCCATCAATGTTAGTCCGATAGAGTATGGGCATGTGCTGCTGATTCC 1020 Query 1076 TCGTGTTCTTGACTGCTTGCCTCAAAGGATCGATCACAAAAGCCTTTTGCTTGCAGTTCA 1135 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1021 TCGTGTTCTTGACTGCTTGCCTCAGAGGATCGATCACAAAAGCCTTTTGCTTGCAGTTCA 1080 Query 1136 CATGGCTGCTGAGGC-TGCTAATCCATACTTCAGACTCGGTTACAACAGCTTGGGTGCTT 1194 ||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||| Sbjct 1081 CATGGCTGCTGAGGCCT-CTAATCCATACTTCAGACTCGGTTACAACAGCTTAGGTGCTT 1139 Query 1195 TTGCCACTATCAATCATCTCCACTTTCAGGCTTATTACTTGGCCATGCCTTTCCCACTGG 1254 ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 1140 TTGCCACGATCAATCATCTTCACTTTCAGGCTTATTACTTGGCCATGCCTTTCCCTCTGG 1199 Query 1255 AGAAAGCTCCTACCAAGAAGATAACTACCACTGTTAGTGGTGTCAAAATCTCAGAGCTTC 1314 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 AGAAAGCTCCTTCCAAGAAGATAACTACCACTGTTAGTGGTGTCAAAATCTCAGAGCTTC 1259 Query 1315 TAAGTTACCCTGTGAGAAGTCTTCTCTTTGAAGGTGGAAGCTCTATGCAAGAACTATCTG 1374 ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| | Sbjct 1260 TAAGTTACCCTGTGAGAAGTCTTCTTTTTGAAGGTGGAAGCTCTATGCAAGAGCTATCCG 1319 Query 1375 ATACTGTTTCAGACTGC-TGTGTTTGCCTTCAAAACAACAACATTCCTTTCAACATTCTC 1433 ||||||| |||||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 1320 ATACTGTATCAGAC-GCCTGTGTTTGCCTTCAGAACAACAACATTCCTTTCAACATTCTC 1378 Query 1434 ATCTCTGATTGTGGAAGGCAGATCTTCTTAATGCCACAGTGTTACGCAGAGAAACAGGCT 1493 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1379 ATCTCTGATTGTGGAAGGCAGATCTTCTTGATGCCACAGTGTTACGCAGAGAAACAGGCT 1438 Query 1494 CTAGGTGAAGTGAGCCCGGAGGTATTGGAAACACAAGTGAACCCAGCCGTGTGGGAGATA 1553 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1439 CTAGGTGAAGTAAGCCCGGAGGTGTTGGAAACACAAGTGAACCCAGCCGTGTGGGAGATA 1498 Query 1554 AGTGGTCACATGGTACTGAAGAGGAAAGAGGATTACGAAGGTGCTTCAGAGGATAACGCG 1613 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1499 AGTGGTCACATGGTACTGAAGAGGAAAGAGGATTACGAAGGAGCTTCAGAGGATAACGCG 1558 Query 1614 TGGAGGCTCCTTGCGGAAGCTTCTCTGTCGGAGGAAAGGTTTAAGGAGGTTACTGCTCTC 1673 |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1559 TGGAGGCTCCTTGCAGAAGCTTCTCTGTCGGAGGAAAGGTTTAAGGAGGTTATTGCTCTC 1618 Query 1674 GCCTTTGAAGCCATAGGTTGTAGTAACCAAGAGGAGGATCTTGAAGGAACCATAGTTCAT 1733 |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| Sbjct 1619 GCCTTTGAAGCCATAGGTAGTAGTAACCACGAGGAGGATCTTGAAGGAACCATAGTTCAT 1678 Query 1734 CAGCAAAACTCTAGTGGCAATGTTAACCAGAAAAGCAACAGAACCCATGGAGGTCCGATC 1793 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1679 CAGCAAAACCCTAGTGGCAATGTTAACCAGAAAAGCAACCGAACCCATGGAGGTCCGATC 1738 Query 1794 ACAAATGGGACGGCCGCCGAGTGCCTTGTCCTTCAGTGAACAATATGGTGACTTGGTGGT 1853 ||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||| Sbjct 1739 ACAAACGGGACGGCCGCGGAGTGCCTTGTCCTTCAGTGAACAATATTGTGACTTGGTGGT 1798 Query 1854 TTGTATGTATAATTAAAAGCCTAAATAAGCAAACTCTCTTTGTAGTTGCATTTGAAGCTT 1913 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1799 TTGTATGTATAATTAAAAGCCTAAATAAGCAAACTCTCTTTGTAGTTGCATTCGAAGCTT 1858 Query 1914 CTTGGTTTAT-GTATGATGGTTGTGGGCATTTTGTGCCT--AGACTT-CTGGTTCTTTGT 1969 ||||||| || |||||||||||||||||||||||||||| |||||| |||||||||||| Sbjct 1859 CTTGGTT-ATTGTATGATGGTTGTGGGCATTTTGTGCCTCTAGACTTACTGGTTCTTTGT 1917 Query 1970 TTTTTGTTATGAGTTGGTGTTTATGAATTATATATGTTCTTCACTAATATGATTATTATT 2029 |||| ||||| ||||||||||||||||| |||||| |||||||| | |||||||||||| Sbjct 1918 TTTT-GTTATAAGTTGGTGTTTATGAAT-ATATATTTTCTTCACGAGGATGATTATTATT 1975 Query 2030 TGTATAGATTTGATTATTC 2048 ||||||||||||||| ||| Sbjct 1976 TGTATAGATTTGATTGTTC 1994 > Ahg950164 jgi|Araly1|950164|scaffold_802051.1 Length=1330 Score = 785 bits (425), Expect = 0.0 Identities = 795/973 (82%), Gaps = 27/973 (3%) Strand=Plus/Plus Query 711 CTCGAGTCCCTTGTTCTCGGAGAGTGGGAGGATAGGTTCCAAAGAGGACTTTTTCGCTAT 770 ||||| || || ||||| ||||||||||| ||| | |||||||||||||||||||||||| Sbjct 210 CTCGAATCTCTAGTTCTTGGAGAGTGGGAAGATCGTTTCCAAAGAGGACTTTTTCGCTAT 269 Query 771 GATGTCACTGCCTGCGAAACCAAAGTTATCCCGGGGAAGTATGGTTTCGTTGCTCAGCTT 830 |||||||| |||||||||||||| ||||| ||||||||||| |||||| |||| ||||| Sbjct 270 GATGTCACCGCCTGCGAAACCAAGGTTATACCGGGGAAGTACGGTTTCATTGCGCAGCTG 329 Query 831 AACGAGGGTCGTCACT-TGAAGAAGAGGCCAACTGAGTTCCGTGTAGA-TAAGGTGTTGC 888 || || |||||||| | | |||||||| ||||| |||||| |||| || ||| | || | Sbjct 330 AATGAAGGTCGTCA-TCTCAAGAAGAGACCAACCGAGTTCTGTGTTGACAAAGTTCTT-C 387 Query 889 AGTCTTTTGATGGCAGCAAATTCAACTTCACTAAAGTTGGCCAAGAAGAGTTGCTCTTCC 948 | | |||||||| | ||| ||||| |||||||||||||| |||||||||||||| |||| Sbjct 388 AACCATTTGATGGAAACAAGTTCAATTTCACTAAAGTTGGTCAAGAAGAGTTGCTTTTCC 447 Query 949 AGTTTGAAGCT-G--GTGAA-GATGCCCA-AGT----T-CAGTTCTTCCCTTGCATGCCT 998 ||||||||||| | | || || | | ||| | |||||||| || | || ||| Sbjct 448 AGTTTGAAGCTAGCAAT-AACGACGATGATAGTAAAATCCAGTTCTTGCCGAGTATCCCT 506 Query 999 ATTGACCCTGAGAATTCTCCCAGTGTTGTTGCCATCAATGTTAGTCCGATAGAGTATGGC 1058 | ||| | || |||||||| || || ||||| |||||||| |||||||| |||||||| Sbjct 507 CTAGACGCGGATAATTCTCCAAGCGTCGTTGCAATCAATGTGAGTCCGATTGAGTATGGA 566 Query 1059 CATGTGCTGCTGATTCCTCGTGTTCTTGACTGCTTGCCTCAAAGGATCGATCACAAAAGC 1118 |||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 567 CATGTGTTGCTGATTCCTCGTGTTCTTGATTGCTTGCCTCAAAGGATTGATCACAAAAGC 626 Query 1119 CTTTTGCTTGCAGTTCACATGGCTGCTGAGGCTGCTAATCCATACTTCAGACTCGGTTAC 1178 ||||||||||| |||| ||||| ||||| || |||||||| || ||| |||| || ||| Sbjct 627 CTTTTGCTTGCTCTTCAAATGGCGGCTGAAGCCGCTAATCCGTATTTCCGACTTGGATAC 686 Query 1179 AACAGCTTGGGTGCTTTTGCCACTATCAATCATCTCCACTTTCAGGCTTATTACTTGGCC 1238 ||||| || || |||||||| || ||||| ||||| |||||||||||||| || ||||| Sbjct 687 AACAGTTTAGGAGCTTTTGCTACCATCAACCATCTTCACTTTCAGGCTTACTATTTGGCA 746 Query 1239 ATGCCTTTCCC-ACTGGAGAAAGCTCCTACCAAGAAGATAACTACCACTGTTAGTGGTGT 1297 |||| ||||| | | ||||||||| || || |||||| ||||||||| || || || Sbjct 747 ATGCAATTCCCGA-TTGAGAAAGCTTCTTCCTTGAAGATCACTACCACTAATAACGGCGT 805 Query 1298 CAAAATCTCAGAGCTTC-T-AAGTTACCCTGTGAGAAGTCTTCTCTTTGAAGGTGGAAGC 1355 |||||||||| | | || | || |||||||||||| ||||||| ||||||||||||| | Sbjct 806 CAAAATCTCAAAAC-TCTTGAA-TTACCCTGTGAGGGGTCTTCTATTTGAAGGTGGAAAC 863 Query 1356 TCTATGCAAGAACTATCTGATACTGTTTCAGACTGC-TGTGTTTGCCTTCAAAACAACAA 1414 || || |||| || ||||||||||| ||||| ||| | ||||| ||||| |||||||| Sbjct 864 TCCATTAAAGATCTCTCTGATACTGTATCAGA-TGCATCCGTTTGTCTTCAGAACAACAA 922 Query 1415 CATTCCTTTCAACATTCTCATCTCTGATTGTGGAAGGCAGATCTTC-TTAATGCCACAGT 1473 ||||||||||||||||||||||||||||| ||||| || |||||| || | || |||| Sbjct 923 CATTCCTTTCAACATTCTCATCTCTGATTCTGGAAAACAAATCTTCCTTC-TCCCTCAGT 981 Query 1474 GTTACGCAGAGAAACAGGCTCTAGGTGAAGTGAGCCCGGAGGTATTGGAAACACAAGTGA 1533 |||||||||||||||| ||| |||| ||||| ||| | || ||||||| || ||||||| Sbjct 982 GTTACGCAGAGAAACAAGCTTTAGGAGAAGTTAGCTCAAAGCTATTGGATACGCAAGTGA 1041 Query 1534 ACCCAGCCGTGTGGGAGATAAGTGGTCACATGGTACTGAAGAGGAAAGAGGATTACGAAG 1593 | ||||| || |||||||| ||||| |||||||| ||||||||||||| || ||||||| Sbjct 1042 ATCCAGCGGTTTGGGAGATGAGTGGACACATGGTGTTGAAGAGGAAAGAAGACTACGAAG 1101 Query 1594 GTGCTTCAGAGGATAACGCGTGGAGGCTCCTTGCGGAAGCTTC-TCTGTCGGAGGAAAGG 1652 | |||||||| || || || |||||| | || || |||| ||| | | || ||||| || Sbjct 1102 GAGCTTCAGAAGAGAAGGCATGGAGGTTACTAGCTGAAGTTTCGT-TATCAGAGGAGAGA 1160 Query 1653 TTTAAGGAGGTTA 1665 || || || |||| Sbjct 1161 TTCAAAGAAGTTA 1173 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78389724210 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5