BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G26860.2
Length=1057
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945375 jgi|Araly1|945375|scaffold_701604.1 928 0.0
> Ahg945375 jgi|Araly1|945375|scaffold_701604.1
Length=775
Score = 928 bits (502), Expect = 0.0
Identities = 547/569 (96%), Gaps = 2/569 (0%)
Strand=Plus/Plus
Query 78 GCGATTGGCGATGGCAGCTCCTGCGGTGGAGGCAACCGTCGCAAGTGCTCTCCGCTCTGT 137
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 11 GCGAGTGGCGATGGCAGCTCCTGCGGTGGAGGCAACCGTCGCAACTGCTCTCCGCTCTGT 70
Query 138 GATTCTTA-GAGCTCGTAAGGCGGCGGAGCAAGTAGGAAGAGATCCCGAGCGGGTCAGGG 196
||||| | || ||||||| ||||||||| |||||||||||||||||||||||||||| |
Sbjct 71 CATTCTGAGGA-CTCGTAATGCGGCGGAGAAAGTAGGAAGAGATCCCGAGCGGGTCAGAG 129
Query 197 TCCTTCCAGTCTCCAAGACTAAACCCGTCTCACTTATCCGCCAAATCTACGACGCAGGTC 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 TCCTTCCAGTCTCCAAGACTAAACCCGTCTCACTTATCCGCCAAATCTACGACGCAGGTC 189
Query 257 ACCGTTGCTTCGGCGAGAATTACGTTCAAGAAATCATCGATAAAGCTCCACAGCTTCCGG 316
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 190 ACCGTTGCTTCGGCGAGAATTACGTTCAAGAAATCATCGATAAAGCTCCGCAGCTTCCGG 249
Query 317 AAGATATAGAGTGGCATTTCGTGGGGCATTTACAGAGCAACAAAGCCAAAACGCTATTGA 376
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 ACGATATAGAGTGGCATTTCGTGGGGCATTTACAGAGCAACAAAGCCAAAACGCTATTGA 309
Query 377 CTGGAGTCCCAAATTTGGCAATGGTTCATGGTGTGGATGGAGAAAAGGTAGCAAATCATC 436
||||||||||||| ||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 310 CTGGAGTCCCAAACTTGGCAATGGTTCATGGTGTGGATGGAGAAAAGGTGGCTAACCATC 369
Query 437 TAGATCGAGCTGTTTCAAATCTTGGGAGACATCCACTAAAGGTTTTGGTCCAAGTGAACA 496
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 370 TAGATCGAGCTGTTTCAACCCTTGGGAGACATCCACTAAAGGTTTTGGTCCAAGTGAACA 429
Query 497 CAAGCGGAGAAGTTTCTAAATCTGGAATCGAACCTTCTAGCGTTGTAGAGCTAGCAAGAC 556
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 430 CAAGCGGAGAAGTTTCTAAATCTGGAATCGAACCTTCCAGCGTTGTAGAGCTAGCAAGAC 489
Query 557 ATGTGAAACATCACTGTCCAAATCTGGTATTCTCCGGATTAATGACTATTGGGATGCCTG 616
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 ATGTGAAGCAGCACTGTCCAAATCTGGTATTCTCCGGATTAATGACTATTGGGATGCCTG 549
Query 617 ATTATACGTCTACCCCAGAGAACTTCAGG 645
||||||| ||||| |||||||||||||||
Sbjct 550 ATTATACTTCTACTCCAGAGAACTTCAGG 578
Score = 311 bits (168), Expect = 7e-84
Identities = 188/197 (95%), Gaps = 4/197 (2%)
Strand=Plus/Plus
Query 675 GACACTTTCAAACTGTAGAGCTGATGTATGCAAGGCACTTGGAATGGCTGAGGATCAATT 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 GACACTTTCAAACTGTAGAGCTGATGTATGCAAGGCACTTGGAATGGCTGAGGATCAATT 637
Query 735 TGAACTGTCCATGGGCATGTCTGGTGACTTCGAGCTAGCGATTGAGATGGGAAGCACCAA 794
||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 638 TGAACTGTCCATGGGGATGTCTGGAGACTTTGAGCTAGCGATTGAGATGGGAAGCACCAA 697
Query 795 TGTGAGGGTTGGTTCCACCATTTTCGGACCAAGAGAGTACCCCAAGAAAA-CAACTTAGC 853
||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||
Sbjct 698 TGTGAGGGTTGGTTCCACCATTTTCGGTCCAAGAGAGTACCCCAA-AAAAGCAACTTAGC 756
Query 854 TACTATG-C-TCAAACA 868
|||||| | |||||||
Sbjct 757 TACTATTTCCTCAAACA 773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39342850344
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5