BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G26890.1 Length=1568 Score E Sequences producing significant alignments: (Bits) Value Ahg492112 jgi|Araly1|492112|fgenesh2_kg.7__1545__AT4G26890.1 1832 0.0 Ahg495591 jgi|Araly1|495591|fgenesh2_kg.8__1407__AT5G55090.1 568 6e-161 > Ahg492112 jgi|Araly1|492112|fgenesh2_kg.7__1545__AT4G26890.1 Length=1532 Score = 1832 bits (992), Expect = 0.0 Identities = 1223/1335 (92%), Gaps = 14/1335 (1%) Strand=Plus/Plus Query 234 ATGGAGATTAATTGGACAAGAGGACCAATCATCGGTCGAGGCTCTACCGCCACTGTCTCT 293 |||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||| Sbjct 210 ATGGAGATTAATTGGAAAAGAGGACAAATCATCGGTCGAGGCTCCACCGCCACTGTCTCA 269 Query 294 ATAGCAATCTCAAGCTCCGGTGAGCTCTTCGCCGTCAAATCTGCCGACTTATCTTCTTCG 353 |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 270 ATAGCAATCTCAAGCTCCGGTGAGATCTTCGCCGTTAAATCTGCCGACTTATCTTCTTCA 329 Query 354 TCCTTGTTGCAGAAAGAGCAATCAATCTTGTCTACATTGAGCTCTCCTCACATGGTCAAA 413 || || |||||||||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 330 TCGTTCTTGCAGAAAGAGCAATCATTCTTGTCTACATTGAGCTCTCCTCACATAGTCAAG 389 Query 414 TACATAGGCACTGGTTTAACGCGCGAGAGCAACGGATTGGTGTACAATATACTGATGGAA 473 ||||| ||| ||||||||||| ||||| ||| |||||||||||||||||||||||||| Sbjct 390 TACATCGGCTCTGGTTTAACGTACGAGAACAATGGATTGGTGTACAATATACTGATGGAG 449 Query 474 TACGTTTCTGGTGGAAATCTTCACGATTTAATCAAAAATTCCGGCGGTAAGTTGCCGGAG 533 |||||||| || || | |||||||||||||||||||||||||||||| |||||||||||| Sbjct 450 TACGTTTCCGGCGGGAGTCTTCACGATTTAATCAAAAATTCCGGCGGGAAGTTGCCGGAG 509 Query 534 CCGGAGATAAGATCATACACTCGTCAGATTCTTAACGGTTTGGTGTATCTTCACGAGAGA 593 |||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| Sbjct 510 CCGGAGATAAGATCATACACGCATCAAATTCTTAACGGTTTGGTGTATCTTCACGAGAGA 569 Query 594 GGGATTGTTCACTGCGACTTGAAGAGCCATAACGTTCTGGTTGAGGAAAATGGCGTTTTG 653 ||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||||| Sbjct 570 GGGATTGTTCACTGCGATTTGAAGAGCCAGAACGTTCTGGTGGAGGAAAACGGCGTTTTG 629 Query 654 AAAATCGCCGACATGGGTTGTGCTAAATCGGTTGACAAGTCGGAATTTTCCGGTACACCG 713 ||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||| Sbjct 630 AAAATCGCCGACATGGGTTGTGCTAAATCAGTTGGCAAGTCGGAATTATCCGGTACACCG 689 Query 714 GCGTTTATGGCCCCAGAAGTTGCTCGTGGTGAAGAACAGAGGTTTCCGGCTGATGTGTGG 773 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 690 GCGTTTATGGCCCCGGAAGTTGCTCGTGGTGAAGAACAGAGGTTTCCAGCTGATGTGTGG 749 Query 774 GCTTTGGGATGTAC-GATGATCGAGATGATGACTGGATCAAGCCCTTGGCCGGAGTTAAA 832 ||||||||||| || | ||||||||||||||||||||||||| |||||||| ||| |||| Sbjct 750 GCTTTGGGATGCACAG-TGATCGAGATGATGACTGGATCAAGTCCTTGGCCCGAGCTAAA 808 Query 833 CGACGTCGTTGCTGCAATGTATAAGATTGGATTTTCAGGCGAGTCGCCGGCGATTCCCGC 892 |||||||||||||||||||||||||||||| || || || |||||||||| |||||| | Sbjct 809 CGACGTCGTTGCTGCAATGTATAAGATTGGCTTCTCTGGTGAGTCGCCGGAGATTCCTGG 868 Query 893 GTGGATATCGGATAAAGCTAAAGACTTTCTGAAGAATTGTTTAAAGGAAGATCAAAAACA 952 |||||||||||| |||||||||||||||||||| |||||||| |||||||||| |||||| Sbjct 869 GTGGATATCGGAGAAAGCTAAAGACTTTCTGAATAATTGTTTGAAGGAAGATCCAAAACA 928 Query 953 GAGATGGACTGTGGAAGAATTACTTAAACATCCATTTCTTGATGACGACGAAGAATCTCA 1012 ||||||||||||||||||||| ||||||||| ||||||| || ||||| ||||||||||| Sbjct 929 GAGATGGACTGTGGAAGAATTGCTTAAACATTCATTTCTCGACGACGAAGAAGAATCTCA 988 Query 1013 GACAAGTGATTGTTTGAAGAACAAGACTTCTTCTCCAAGCACTGTGTTGGATCAACGATT 1072 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 989 GACAAGCGATTGTTTGAAGAACAAGACTTCTTCTCCAAGCACAGTGTTGGATCAACGATT 1048 Query 1073 TTGGGATTCATGCGAAAGCTCCAAAAGTCACTTAGTTTCGATTGATCATGAAGACCCTTT 1132 |||||||||||||||| ||| |||| ||||||| ||||||| ||||| ||||||||||| Sbjct 1049 CTGGGATTCATGCGAAACCTCGAAAACTCACTTAATTTCGATGGATCACGAAGACCCTTT 1108 Query 1133 TGCTGAATACTCGGAATCTTTGGATTCACCGGCTGATCGGATCGAGAAACTCGCCGGAGA 1192 |||||| ||||||||||||| || |||||||||| | ||||||||||||||||||||||| Sbjct 1109 TGCTGATTACTCGGAATCTTGGGGTTCACCGGCTAAACGGATCGAGAAACTCGCCGGAGA 1168 Query 1193 TGAGTTTTCAAGCTTACTTGATTGGGATACGGAAGACGATGGCGGATGGATTCAAGTGAG 1252 ||| |||| |||||||| ||||||| ||| ||||| || ||||| |||||||||||||| Sbjct 1169 TGAATTTTTAAGCTTACCCGATTGGGTTACTGAAGAAGACGGCGGGTGGATTCAAGTGAG 1228 Query 1253 AGGCGA-GAAACATAAAGAAACCGAGAAACGCGACGGCGACGAAGACGTGATTTGCGTTG 1311 |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1229 AGGCGACGAAT-ATGAAGAAACCGAGAAACGCGACGGCGACGAAGACGTGATTTGCGTTG 1287 Query 1312 AAGCAACGTCATCGTCGCAAACGATTGAAGAAGTTGAAGATTGGATTTCGAATCAAGACA 1371 || ||||||| |||| | | ||||||| |||||||||||||||||||||||||| Sbjct 1288 AAACAACGTC---GTCG-AT--G---GAAGAAGATGAAGATTGGATTTCGAATCAAGACA 1338 Query 1372 GCTTGTTCTCGGAATATTCCTCTGACGACATCATTAATAATTTCTACTCTAATGTTGCTA 1431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1339 GCTTGTTCTCGGAATATTCCTCTGACGACATCATTAATAATTTCTACTCTAATGTTGCTA 1398 Query 1432 TTCAAGGAAATTTAATTGCATTTCATTATTGTACTGATGAAGATGAAAATGTATCCATAA 1491 ||||||||||||||||||||||| |||||| || |||||||| | ||||||||||||||| Sbjct 1399 TTCAAGGAAATTTAATTGCATTTTATTATTTTAGTGATGAAGGTAAAAATGTATCCATAA 1458 Query 1492 AGAATATGTTTCGTACTAATAACAAACATTTGTTTTTCAAATTGCAAGCTCATGTTAAAT 1551 ||||| |||||| |||||| || ||| | ||||||| |||||||||||||||| || ||| Sbjct 1459 AGAATTTGTTTCATACTAAAAA-AAATAATTGTTTTCCAAATTGCAAGCTCATTTTTAAT 1517 Query 1552 TCACTAACCAAGTCT 1566 |||||||||||||| Sbjct 1518 CCACTAACCAAGTCT 1532 Score = 248 bits (134), Expect = 9e-65 Identities = 186/209 (89%), Gaps = 12/209 (6%) Strand=Plus/Plus Query 1 GGAGGAGAAGAAATCAACAACTTAAGAATAAAGAATGTCGTATCCGACTTCGAACCAAAG 60 ||||||||||||||||| ||||| |||||||||||| || | |||||||| ||||||||| Sbjct 1 GGAGGAGAAGAAATCAAGAACTT-AGAATAAAGAATATCTTCTCCGACTTTGAACCAAAG 59 Query 61 CCCCATGCCAAAGTCACATACACACACTTCTACATACCCTAAACACACACACTC-GAA-T 118 |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| | Sbjct 60 CCCCATGCCAAAGTCACATACACACACTTCTACATACCCTAAACACACACACACAGAAAT 119 Query 119 ACATAAA-CTCTT-T-TCTATATATA-A-A--CTTCTTATAAGCCATTTGCTTAAACAAC 171 |||||| || || | | |||||||| | | |||||| |||||||||||||||||||| Sbjct 120 ACATAATTCTTTTATATATATATATATATAAGCTTCTTCTAAGCCATTTGCTTAAACAAA 179 Query 172 TCTCAAGT-aaaaaaaaaaaaTCAACAAT 199 |||||||| |||||||||||| ||||||| Sbjct 180 TCTCAAGTCAAAAAAAAAAAA-CAACAAT 207 > Ahg495591 jgi|Araly1|495591|fgenesh2_kg.8__1407__AT5G55090.1 Length=1324 Score = 568 bits (307), Expect = 6e-161 Identities = 939/1228 (76%), Gaps = 107/1228 (9%) Strand=Plus/Plus Query 246 TGGACAAGAGGACCAATCATCGGTCGAGGCTCTACCGCCACTGTCTCTA-TAGCAATCTC 304 |||| ||||||||||||||| || |||||||| || || |||||||| | | |||||| | Sbjct 16 TGGATAAGAGGACCAATCATAGGCCGAGGCTCAACAGCTACTGTCTC-ACTTGCAATCAC 74 Query 305 AAGCTCCGGTGAGC-TCTTCGCCGTCAAATCTGCCGACTTATCTTCTTCGTCCTTGTTGC 363 || ||||||||| | |||||||||||||||| |||| || ||||| ||| | || |||| Sbjct 75 AAACTCCGGTGA-CTTCTTCGCCGTCAAATCCACCGAGTTTTCTTCATCGGCGTTTTTGC 133 Query 364 AGAAAGAGCAATCAATCTTGTCTACA-TTGAGCTCTCCTCACATGGTCAAATACATAGGC 422 ||| ||| ||||| || || || | | |||||||||||| | || ||||| ||||| || Sbjct 134 AGAGAGAACAATCGATTTTATCGA-ATTTGAGCTCTCCTTATATAGTCAAGTACATTGGT 192 Query 423 ACTGGTTTAACG-CGCGAGAGCAACGGATTGGTGTACAATATAC-TGATGGAATACGTTT 480 || | ||||| || |||| | || |||| |||| ||| | | || ||||||| |||| Sbjct 193 TCTAATGTAACGACG-GAGAACGACAAATTGATGTATAATCT-CTTGCTGGAATATGTTT 250 Query 481 CTGGTGGAAATCTTCACGATTTAATCAAAAATTCCGGCGGTAAGTTGCCGGAGCCGGAGA 540 | || || | | | |||||||| || || ||||||||||| |||||||||||||||| || Sbjct 251 CCGGCGGGAGTATGCACGATTTGATGAAGAATTCCGGCGGGAAGTTGCCGGAGCCGGTGA 310 Query 541 TAAGATCATACACTCGTCAGATTCTT-AACGGTTTGGTGTATCTTCACGA-GAGAGGGAT 598 | ||||| ||||| ||||||| | || || |||||| |||||||||| || | ||| || Sbjct 311 TTAGATCCTACACGCGTCAGA-TATTAAAAGGTTTGATGTATCTTCATGATCA-AGGTAT 368 Query 599 TGTTCACTGCGACTTGAAGAGCCATAACGTTCTGGTTGAGGAAAATGGCGTTTTG-AAA- 656 |||||| ||||| ||||||||||| || || | | | ||| | | | ||| ||| Sbjct 369 TGTTCATTGCGATTTGAAGAGCCAGAATGTGAT-GAT-CGGAGGA--GAG-ATTGCAAAG 423 Query 657 ATCGCCGACATGGGTTGTGCTAAATCGGT---------TGACAAGTCGGAATTTTCCGGT 707 |||| || |||| ||||||||| |||| ||| || | ||||||||||||| Sbjct 424 ATCGTTGATTTGGGCTGTGCTAAAACGGTGGAAGAGGATGAGAATTTGGAATTTTCCGGT 483 Query 708 ACACCGGCGTTTATGGCCCCAGAAGTTGCTCGTGGTGAAGAACAGAGGTTTCCGGCTGAT 767 ||||||||||||||| | || ||||| || ||||||||||||||||| ||||| |||||| Sbjct 484 ACACCGGCGTTTATGTCGCCGGAAGTAGCACGTGGTGAAGAACAGAGTTTTCCAGCTGAT 543 Query 768 GTGTGGGCTTTGGGATGTACGATGATCGAGAT-GATGACT-GGATCAAGCCCTTGGCCGG 825 || ||||||||||| |||||| |||| ||||| | | ||| ||| |||| |||||||||| Sbjct 544 GTATGGGCTTTGGGGTGTACGGTGATAGAGATGGCT-ACTGGGA-CAAGTCCTTGGCCGG 601 Query 826 AGTTAAACGACGTCGTTGCTGCAATGTATAAGATTGGATTTTCA--GGCGAGTCGCCGGC 883 |||||||||||||||||||||| || ||||||||||| ||| || || |||||||||| Sbjct 602 AGTTAAACGACGTCGTTGCTGCGATTTATAAGATTGG-TTT-CACCGGTGAGTCGCCGGA 659 Query 884 GATTCCCGCGTGGATATCGGATAAAGCTAAAGACTTTCTGAAGAATTGTTTAAAGGAA-G 942 |||||| | ||| |||||||||||| | |||||||| ||| ||| ||||| | | || | Sbjct 660 GATTCCGGTTTGGTTATCGGATAAAGGTCAAGACTTTTTGAGGAAATGTTTGA-GAAAAG 718 Query 943 AT-CAAAAACAGAGATGGACTGTGGAAGAATTACTTAAACATCCATTTCTTGATGACGAC 1001 || ||||| |||||||||| ||| ||||||| ||| ||||||| ||||||||||| || Sbjct 719 ATTCAAAA-CAGAGATGGAGTGTTCAAGAATTGCTTCAACATCCGTTTCTTGATGAAGAA 777 Query 1002 GAAGA--ATCTCAGACAAGTGATTGTTTGAAGAACAAGACTTCTTCTCCAAGCACTGTGT 1059 || || | | || | || ||||| |||| | ||| |||||||| ||||||| Sbjct 778 GACGACGA-CGAAG-CTCGTAATTGTCTGAATT-C-----TTCATCTCCAAGTACTGTGT 829 Query 1060 TGGATCAACGATTTTGGGATTCATGCGAAAGCTCCAA-AAGTC-ACTT-AGTTTCGATTG 1116 |||||||| | |||||||||| ||| |||| || ||| ||||| | || | || | | Sbjct 830 TGGATCAAGGTTTTTGGGATTTATGTGAAA-CTTCAAGAAGTCGA-TTCA-TTAA-AGCG 885 Query 1117 -ATCATGAAGACCCTTTTGCTGAATACT-CGGAAT--CTT-TGG-AT--T-C---ACCGG 1164 |||| |||||||| ||||| ||| || | ||| ||| ||| || | | ||||| Sbjct 886 GATCACGAAGACCCATTTGCA-AATTCTACA-AATTTCTTATGGGATGATTCGTTACCGG 943 Query 1165 CTGATCGGATCGAGAAACTCGCCGGAGATGAGTTTTCAAGCTTA-CTTGATTGGGATACG 1223 |||||||||| |||||||||||||||||||| ||| | | | || || ||||| ||| Sbjct 944 GTGATCGGATCAAGAAACTCGCCGGAGATGAGAATTCCGG-TGAACTAGAGTGGGAAACG 1002 Query 1224 GAAGACGATGGCGGATGGATTCAAGTGAGAGGCGAGAAACATAAAGAAACCGAGAAACGC 1283 || || | |||||| |||| ||||| |||| || |||||| | || || Sbjct 1003 -AA--CGGT------TGGATTGAAGTTAGAGGAGAGA----TAGAGAAAC-GT-AA-CGA 1046 Query 1284 GACGGCGACGAAGACGTGATTTGCGTTGAAGCAACGTCATCGTCGCA--AAC--GAT-TG 1338 | | | ||||| | || |||||||||||||||||||| | | | || || || Sbjct 1047 -A-GA--A-GAAGATGAGAATTGCGTTGAAGCAACGTCATTGGAGGAGGAAGAAGAAGTG 1101 Query 1339 A-AGAAGTTGAAGA-TTGGAT-TTCGA--ATCAAGACAGCTTGTTCTCGGAATATTCCTC 1393 || | |||| || |||||| || || | |||||||||||||||| |||||||||| | Sbjct 1102 GGAGGATTTGA-GAATTGGATCTTGGATCAACAAGACAGCTTGTTCTTGGAATATTCCCC 1160 Query 1394 TGACGACATCATTAATAATTTCTACTCT 1421 ||| |||| ||||||| |||| |||||| Sbjct 1161 TGAGGACAACATTAATTATTTTTACTCT 1188 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58735157790 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5