BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G27030.1 Length=1150 Score E Sequences producing significant alignments: (Bits) Value Ahg492093 jgi|Araly1|492093|fgenesh2_kg.7__1526__AT4G27030.1 1718 0.0 Ahg481151 jgi|Araly1|481151|fgenesh2_kg.4__211__AT2G22890.1 769 0.0 > Ahg492093 jgi|Araly1|492093|fgenesh2_kg.7__1526__AT4G27030.1 Length=1122 Score = 1718 bits (930), Expect = 0.0 Identities = 1046/1102 (95%), Gaps = 8/1102 (1%) Strand=Plus/Plus Query 9 CTTTCACCTGCAATCACTCTCAATGGCTGTATCACTTCCAACCAAGTACCCTCTACGACC 68 ||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||| Sbjct 1 CTTTCACCTGCAATCTCTCTCAATGGCTGTATCACTTCAAACCAAGTACCCTCTAAGACC 60 Query 69 TATCACCAACATCCCAAAAAGCCACCGTCCCTCGCTTCTCCGTGTACGTGTCACCTGCTC 128 ||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||| Sbjct 61 TATCACCAACATCCCAAGAAGCTACCGTCCGTCGCTTCTCCGTGTACGTGTCACCTGCTC 120 Query 129 TGTTACTACCACCAAGCCTCAGCCTAATCGTGAGAAGCTTCTGGTAGAGCAACGCACTGT 188 ||||||||||| |||||||||||| ||||||||||||||| |||||||||||| || ||| Sbjct 121 TGTTACTACCATCAAGCCTCAGCCAAATCGTGAGAAGCTTGTGGTAGAGCAACACATTGT 180 Query 189 GAATCTTCCTCTGTCCAACGACCA-ATCTCTGCAATCGACCAAGCCTCGCCCTAACCGTG 247 ||| | ||||||||||||| |||| | ||||||||||| |||||||||| |||||||||| Sbjct 181 GAAACCTCCTCTGTCCAACAACCACA-CTCTGCAATCGTCCAAGCCTCGGCCTAACCGTG 239 Query 248 AGAAGCTTGTGGTTGAGCAACGCCTTGCCAGCCCTCCTCTGTCCAATGACCCAACTTTGA 307 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 240 AGAAGCTTGTGGTTGAGCAACGCCTTGCGAGTCCTCCTCTGTCCAATGACCCAACTTTGA 299 Query 308 AATCGACATGGACTCACCGGTTATGGGTTGCAGCGGGCTGCACCACTTTGTTTGTCTCTT 367 ||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 300 AATCGACATGGACCCATCGGTTATGGGTTGCAGCAGGCTGCACCACTTTGTTTGTCTCTT 359 Query 368 TAGCTAAATCTGTCATTGGAGGGTTTGATTCTCATCTCTGCCTCGAACCAGCTTTAGCCG 427 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 360 TAGCTAAATCTGTCATTGGAGGGTTTGATTCTCATCTCTGGCTCGAACCAGCTTTAGCCG 419 Query 428 GTTATGCAGGGTACATCTTAGCTGATCTAGGTTCCGGTGTCTACCACTGGGCCATTGATA 487 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 420 GTTATGCAGGGTACATCTTAGCTGATCTAGGTTCTGGTGTCTACCACTGGGCCATTGATA 479 Query 488 ACTACGGTGATGAGTCAACACCTGTAGTAGGAACCCAAATCGAAGCATTTCAGGGTCACC 547 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 480 ACTACGGTGATGAGTCAACACCAGTAGTAGGAACCCAAATCGAAGCATTTCAGGGTCACC 539 Query 548 ACAAGTGGCCTTGGACAATCACCAGACGGCAATTTGCCAACAATCTACACGCTCTGGCTC 607 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 ACAAGTGGCCTTGGACAATCACCAGACGGCAATTTGCCAACAATCTACACGCTCTGGCTC 599 Query 608 AAGTCATAACCTTCACAGTTCTTCCACTAGACCTTGCATTTAACGACCCTGTGTTTCACG 667 ||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 600 AAGTCATAACCTTTACTGTTCTCCCACTAGACCTTGCATTTAACGACCCTGTCTTTCACG 659 Query 668 GCTTTGTGTGCACATTTGCATTTTGCATATTGTTTAGCCAGCAATTCCATGCTTGGGCAC 727 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 660 GCTTTGTGTGCACATTTGCATTTTGCATAATGTTTAGCCAGCAATTCCATGCTTGGGCAC 719 Query 728 ATGGAACCAAGAGCAAGCTTCCACCTCTCGTGGTCGCGTTGCAGGACATGGGGTTACTTG 787 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 720 ATGGAACCAAGAGCAAGCTTCCACCTCTCGTGGTGGCGTTGCAGGACATGGGGTTGCTTG 779 Query 788 TTTCACGGAGACAGCATGCGGAACATCATCGAGCACCGTATAACAACAATTACTGCATCG 847 |||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||| Sbjct 780 TTTCACGGAGACAGCACGCAGAACATCATCGAGCACCATATAACAACAATTACTGCATCG 839 Query 848 TGAGTGGAGCATGGAACAATGTTCTGGATGAGAGTAAGGTCTTTGAGGCATTGGAGATGG 907 ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 840 TGAGTGGGGCATGGAACAATGTTTTGGATGAGAGTAAGGTCTTTGAGGCATTGGAGATGG 899 Query 908 TGTTTTATTTCCAGCTTGGGGTGAGACCTAGGTCATGGAGTGAGCCAAACTCTGACTGGA 967 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 900 TGTTTTATTTCCAGCTTGGGGTGAGACCTAGGTCATGGAGTGAACCAAACTCTGACTGGA 959 Query 968 TAGAAGAAACCGAAATCTCCAACAACCAAGCATAAATAttttttttACAGAGTGATACAT 1027 |||||||||||| |||||||||||||||||||||| | ||||||||||| |||||||| Sbjct 960 CAGAAGAAACCGAGATCTCCAACAACCAAGCATAAACAAATTTTTTACAGATTGATACAT 1019 Query 1028 GTACAAGAAAATTTCAGTAATATACTGAAAAGATTTCTTCGTAATTTATA---T--GTAA 1082 |||||||||||||| ||||||||| |||| |||||||||||||||||||| | |||| Sbjct 1020 GTACAAGAAAATTTAAGTAATATAATGAAGAGATTTCTTCGTAATTTATACAGTATGTAA 1079 Query 1083 CGA-GTGTGACTGTATTTAATA 1103 | |||||||||||||||||| Sbjct 1080 TAAAGTGTGACTGTATTTAATA 1101 > Ahg481151 jgi|Araly1|481151|fgenesh2_kg.4__211__AT2G22890.1 Length=897 Score = 769 bits (416), Expect = 0.0 Identities = 639/748 (85%), Gaps = 10/748 (1%) Strand=Plus/Plus Query 238 CCTAACCGTGAGAAGCTTGTGGTTGAGCAACGCCTTGCCAGCCCTCCTCTGTCCAATGAC 297 ||||||| |||||||||||| |||||||||| |||| | |||||||| ||||| ||| Sbjct 114 CCTAACCATGAGAAGCTTGTTCTTGAGCAACGACTTGTGAATCCTCCTCTCTCCAACGAC 173 Query 298 CCAACTTTGA-AATCGACATGGACTCACCGGTTATGGGTTGCAGCGGGCTGCACCACTTT 356 ||||| | | |||| ||||||||||||||||||||||||||||| ||||||||||| | Sbjct 174 ACAACTCT-ACAATCTACATGGACTCACCGGTTATGGGTTGCAGCTGGCTGCACCACCGT 232 Query 357 GTTTGTCTCTTTAGCTAAATCTG-TCATTGGAGGGTTTGATTCTCATCTCTGCCTCGAAC 415 ||||||||||| || ||||| | ||||||||| ||||| |||||||||||| ||||||| Sbjct 233 CTTTGTCTCTTTTGCCAAATC-GATCATTGGAGCGTTTGGTTCTCATCTCTGGCTCGAAC 291 Query 416 CAGCTTTAGCCGGTTATGCAGGGTACATCTTAGCTGATCTAGGTTCCGGTGTCTACCACT 475 || |||||||||||| ||| |||||| ||||||| ||||||||||| ||||||||||||| Sbjct 292 CAACTTTAGCCGGTTTTGCCGGGTACTTCTTAGCAGATCTAGGTTCTGGTGTCTACCACT 351 Query 476 GGGCCATTGATAACTACGGTGATGAGTCAACACCTGTAGTAGGAACCCAAATCGAAGCAT 535 |||||| ||||||||||||||||||||||| ||| ||||||| ||||| ||||||| || Sbjct 352 GGGCCACCGATAACTACGGTGATGAGTCAACGCCTCTAGTAGGGACCCATATCGAAG-AT 410 Query 536 T-TCAGGGTCACCACAAGTGGCCTTGGACAATCACCAGACGGCAATTTGCCAACAATCTA 594 | ||| | |||||||||||||||||||||||| ||| ||||||||||||| ||||||||| Sbjct 411 TCTCAAGATCACCACAAGTGGCCTTGGACAATAACCGGACGGCAATTTGCAAACAATCTA 470 Query 595 CACGCTCTGGCTCAAGTCATAACCTTCACAGTTCTTCCACTAGACCTTGCATTTAACGAC 654 || | |||||| || || ||| || | |||||| |||||||||||||||||| | ||| Sbjct 471 CATTTTATGGCTCCAGGCACAACTTTGATAGTTCTCCCACTAGACCTTGCATTTGATGAC 530 Query 655 CCTGTGTTTCACGGCTTTGTGTGCACATTTGCATTTTGCATATTGTTTAGCCAGCAATTC 714 | ||||||||| |||||||| ||| ||||||||| || |||||||| | |||| ||| Sbjct 531 CATGTGTTTCATGGCTTTGTAAGCATGTTTGCATTTAGCGTATTGTTTTGTCAGCTGTTC 590 Query 715 CATGCTTGGGCACATGGAACCAAGAGCAAGCTTCCACCTCTCGTGGTCGCGTTGCAGGAC 774 ||| ||||||| ||||||||||||||||||||||||||||| ||||| | |||||| ||| Sbjct 591 CATACTTGGGCTCATGGAACCAAGAGCAAGCTTCCACCTCTTGTGGTGGGGTTGCAAGAC 650 Query 775 ATGGGGTTACTTGTTTCACGGAGACAGCATGCGGAA-CATCATCGAGCACCGTATAACAA 833 || ||| | ||||||||||||| ||| |||| | || ||||| |||||||||||||| || Sbjct 651 ATTGGGCTGCTTGTTTCACGGATACATCATGTG-AATCATCACCGAGCACCGTATAATAA 709 Query 834 CAATTACTGCATCGTGAGTGGAGCATGGAACAATGTTCTGGATGAGAGTAAGGTCTTTGA 893 |||||||||| | |||||||| | |||||||| ||| ||||||| || ||||||||||| Sbjct 710 CAATTACTGCGTAGTGAGTGGGGTTTGGAACAAGGTTTTGGATGAAAGCAAGGTCTTTGA 769 Query 894 GGCATTGGAGATGGTGTTTTATTTCCAGCTTGGGGTGAGACCTAGGTCATGGAGTGAGCC 953 |||| ||||||||||||| |||||| || | ||||||||||| |||||||||| || | Sbjct 770 GGCAATGGAGATGGTGTTGTATTTCAAGATGGGGGTGAGACCGAGGTCATGGACCGATTC 829 Query 954 AAACTC-TGACTGGATAGAAGAAACCGA 980 |||||| | | ||||| ||||||||||| Sbjct 830 AAACTCCTAA-TGGATGGAAGAAACCGA 856 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42888281625 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5