BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G27070.1 Length=1854 Score E Sequences producing significant alignments: (Bits) Value Ahg492090 jgi|Araly1|492090|fgenesh2_kg.7__1523__AT4G27070.1 2712 0.0 Ahg495562 jgi|Araly1|495562|fgenesh2_kg.8__1378__AT5G54810.1 1327 0.0 > Ahg492090 jgi|Araly1|492090|fgenesh2_kg.7__1523__AT4G27070.1 Length=1822 Score = 2712 bits (1468), Expect = 0.0 Identities = 1715/1829 (94%), Gaps = 38/1829 (2%) Strand=Plus/Plus Query 38 TTTTCTGTTGTTCACAAATAAGTTAACGTGGTACCGAACTACCGATTTCCTCCA--CTAT 95 |||| |||||||| |||||||||||||||||||| | | | || ||||| | | | Sbjct 20 TTTTTTGTTGTTCGCAAATAAGTTAACGTGGTACTG-ATTTCC----TCCTCTATTTTTT 74 Query 96 TTTATTGAATTTCTGGTC-AAAAAACTTAAGTGTTACATAACGAATCTATAAAA-AGAAC 153 |||||||||||||||||| |||||| ||||||| ||||||||||||||||||| | || Sbjct 75 TTTATTGAATTTCTGGTCAAAAAAAGGTAAGTGTCACATAACGAATCTATAAAACA-AAA 133 Query 154 CCTCACTTTCAAGGTTTTTGTCAGCAAAACATTTGTCTTCGTGTTTGAAAGCTAGATAAA 213 || |||||||||||||||||||||||||||||||||||| | |||||| || ||||| || Sbjct 134 CCACACTTTCAAGGTTTTTGTCAGCAAAACATTTGTCTTTGAGTTTGAGAGATAGAT-AA 192 Query 214 AGATTCACTAAATGGCCACCGCAAGCACCGCTGCTACTTTCAGACCCTCCTCCGTTTCAG 273 ||||||||| ||||||||||||| |||||||||||||||||||| | |||||||||||| Sbjct 193 AGATTCACT-AATGGCCACCGCAGGCACCGCTGCTACTTTCAGA--C-CCTCCGTTTCAG 248 Query 274 CTTCTTCCGAATTAACCCATCTGAGATCACCCTCCAAACTCCCCAAATTTACGCCTCTGC 333 ||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 249 CTTCTTCCGAAGCAACCCGTCTGAGATCGCCCTCCAAACTCCCCAAATTTACGCCTCTGC 308 Query 334 CATCGGCTCGCTCACGGTCCTCTTCTTCGTTCTCCGTCTCCTGCACCATCGCTAAGGACC 393 ||||| ||||||||||||||||||||||||| |||||||| || |||||||||||||||| Sbjct 309 CATCGTCTCGCTCACGGTCCTCTTCTTCGTTTTCCGTCTCTTGTACCATCGCTAAGGACC 368 Query 394 CAG-CTGTTGTCATGGCGGACTCGGAGAAGATTAAGGCCGCTGGATCTGATCCGACTATG 452 | | ||||| |||||||||| | | | |||||||||||||||||||||| ||| Sbjct 369 C-GACTGTTTTCATGGCGGA-T-----ACG---GAGGCCGCTGGATCTGATCCGACCATG 418 Query 453 TGGCAACGACCTGATTCATTCGGTCGTTTCGGGAAGTTTGGCGGCAAGTACGTCCCCGAA 512 |||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||| Sbjct 419 TGGCAACGGCCTGATTCATTCGGTCGGTTCGGGAAGTTTGGCGGGAAGTATGTCCCCGAA 478 Query 513 ACTCTAATGCACGCCCTCTCTGAACTCGAAACGGCTTTCTATTCGCTCGCCACCGACGAA 572 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 ACTCTAATGCACGCCCTCTCTGAACTCGAAACGGCTTTCTATTCGCTCGCCACCGACGAA 538 Query 573 GATTTCCAGAGAGAATTAGCAGAGATCTTGAAAGACTACGTTGGTCGGGAAAGTCCTCTT 632 ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||| Sbjct 539 GATTTCCAGAGAGAATTGGCAGAGATCTTGAAAGACTATGTGGGTCGGGAAAGTCCTCTT 598 Query 633 TACTTTGCAGAGAGGCTCACGGAGCATTACCGCCGTGAAAACGGTGAAGGGCCGCTCATA 692 |||||||||||||||||||| |||||||||||||| |||||||| ||||| || |||||| Sbjct 599 TACTTTGCAGAGAGGCTCACAGAGCATTACCGCCGAGAAAACGGGGAAGGACCCCTCATA 658 Query 693 TACCTCAAAAGGGAAGACTTGAACCACACCGGTGCTCACAAGATCAACAACGCTGTGGCT 752 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 TACCTCAAAAGGGAAGACTTGAACCACACCGGTGCTCACAAGATCAACAACGCTGTGGCT 718 Query 753 CAGGCTCTTCTCGCCAAGCGTCTAGGAAAGAAACGAATTATTGCTGAGACAGGGGCTGGT 812 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 719 CAGGCTCTTCTCGCCAAGCGTCTAGGAAAGAAACGGATTATTGCTGAGACAGGGGCTGGT 778 Query 813 CAACATGGTGTAGCCACAGCTACTGTGTGTGCACGTTTCGGTTTGCAGTGCATTATCTAC 872 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 779 CAACATGGTGTAGCCACAGCTACCGTGTGTGCACGTTTCGGTTTGCAGTGCATTATCTAC 838 Query 873 ATGGGTGCTCAAGACATGGAGAGACAAGCTCTTAATGTGTTCAGAATGCGTCTTCTCGGT 932 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 ATGGGTGCTCAAGACATGGAGAGACAAGCTCTTAATGTGTTCAGAATGCGTCTTCTCGGT 898 Query 933 GCTGAGGTAAGGGGAGTCCACTCTGGAACAGCCACTTTAAAGGACGCAACTTCTGAAGCT 992 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 GCTGAGGTAAGGGGAGTCCACTCTGGAACAGCCACTTTAAAGGACGCAACTTCTGAAGCT 958 Query 993 ATAAGGGATTGGGTGACCAATGTGGAGACTACACATTACATATTGGGATCCGTTGCGGGT 1052 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 959 ATAAGGGATTGGGTGACAAATGTGGAGACTACACATTACATATTGGGATCCGTTGCGGGT 1018 Query 1053 CCTCATCCTTATCCTATGATGGTCAGAGACTTTCACGCGGTGATTGGTAAAGAAACAAGG 1112 ||||||||||| |||||||||||||| |||||||| || ||||||||||||||||||||| Sbjct 1019 CCTCATCCTTACCCTATGATGGTCAGGGACTTTCATGCCGTGATTGGTAAAGAAACAAGG 1078 Query 1113 AAACAAGCGATGGAGAAATGGGGCGGGAAGCCTGATGTTCTGGTTGCTTGTGTCGGTGGT 1172 | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 AGACAAGCTATGGAGAAATGGGGCGGGAAGCCTGATGTTCTGGTTGCTTGTGTCGGTGGT 1138 Query 1173 GGTTCAAATGCTATGGGACTCTTCCATGAATTTGTCGATGACACAGAGGTTCGAATGATT 1232 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1139 GGTTCAAATGCCATGGGACTCTTCCATGAATTTGTCGATGACACAGAGGTTCGGATGATT 1198 Query 1233 GGTGTGGAAGCCGCTGGATTTGGATTGGACAGCGGCAAACATGCTGCCACATTGACAAAA 1292 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1199 GGTGTGGAAGCCGCTGGATTTGGATTGGACAGCGGCAAACACGCTGCCACATTGACAAAA 1258 Query 1293 GGAGATGTCGGTGTACTCCACGGAGCTATGAGTTACTTGCTGCAAGATGATGATGGCCAA 1352 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1259 GGAGATGTCGGTGTACTCCATGGAGCTATGAGTTACTTGCTGCAAGATGATGATGGCCAA 1318 Query 1353 ATCATTGAACCACACTCCATCAGTGCCGGATTGGACTACCCTGGAGTCGGACCTGAGCAT 1412 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1319 ATCATTGAACCACACTCCATCAGTGCCGGATTGGATTACCCTGGAGTCGGACCTGAGCAT 1378 Query 1413 AGTTTCCTTAAAGACGTGGGAAGGGCTGAATACTTTAGCGTTACTGATGAAGAAGCATTA 1472 ||||||||||||||| ||||| ||||||| |||| ||||||||| ||||||||||| ||| Sbjct 1379 AGTTTCCTTAAAGACATGGGACGGGCTGAGTACTATAGCGTTACCGATGAAGAAGCCTTA 1438 Query 1473 GAAGCTTTCAAGAGAGTGTCTCGGTTGGAGGGAATAATCCCGGCATTGGAGACATCGCAC 1532 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1439 GAAGCTTTCAAGAGAGTGTCTCGGTTGGAGGGAATAATCCCGGCACTGGAGACATCGCAC 1498 Query 1533 GCATTGGCCCATCTGGAGAAGCTTTGTCCGACGTTACCTGATGGAGCCAGAGTGGTATTA 1592 || ||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||| Sbjct 1499 GCGTTGGCCCATCTAGAGAAGCTTTGTCCGACGTTACCTGATGGAACCAGAGTGGTCTTA 1558 Query 1593 AACTTCAGTGGGAGAGGCGACAAGGATGTTCAGACTGCAATCAAGTATCTCGAAGTTTAA 1652 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1559 AACTTCAGTGGGAGAGGCGACAAGGATGTTCAGACTGCAATCAAATATCTCGAAGTTTAA 1618 Query 1653 AGAGTGTAGATTACTTTCATTTTCACACAGTGCTATTTCTTTTA--TGTAGTTTGTTAGT 1710 ||||| |||||||||||||||||||| |||| |||||||| || |||||||||||||| Sbjct 1619 AGAGT--AGATTACTTTCATTTTCACATAGTGATATTTCTTCTACATGTAGTTTGTTAGT 1676 Query 1711 TCTCCTTGCTTATGGTCGGGAATCCAAAAGTTTGGATCAAAGGGTTAA--GAAGAGAATA 1768 ||| | ||||||||||| |||||||||||||||||||| |||||||| |||||||||| Sbjct 1677 TCT--T-GCTTATGGTCGAGAATCCAAAAGTTTGGATCAGAGGGTTAAAAGAAGAGAATA 1733 Query 1769 AGTGTTATGAATGTATCATATAAATAA-AA-A-TGTTCTATGGAACGTTTGATGTTCTTA 1825 | ||||||||||||||| ||||||||| || | ||||||||||||||| ||||||||||| Sbjct 1734 AATGTTATGAATGTATCCTATAAATAATAAGAATGTTCTATGGAACGTATGATGTTCTTA 1793 Query 1826 TAAGCAATTCGAACTGTTTTGTTCTTGAC 1854 ||||||||||||||||||||||||||||| Sbjct 1794 TAAGCAATTCGAACTGTTTTGTTCTTGAC 1822 > Ahg495562 jgi|Araly1|495562|fgenesh2_kg.8__1378__AT5G54810.1 Length=1610 Score = 1327 bits (718), Expect = 0.0 Identities = 1206/1435 (84%), Gaps = 59/1435 (4%) Strand=Plus/Plus Query 216 ATTCACTAAATGGCCA-CCGCAAGCACCGCTGCTACTTTCAGA----CC----C-TC--C 263 ||||| | ||||| || || || |||||||||||||||||||| || | || | Sbjct 11 ATTCAGT-AATGG-CAGCCTCAGGCACCGCTGCTACTTTCAGAGCCTCCGTTTCTTCAGC 68 Query 264 TCCGT-TTCAGCTTCTTCCGAATTAACCCATCTGAG---ATCACCCTCCAAA-CTCCCCA 318 ||| | ||| |||||||| |||| |||||| |||| |||||||| |||| || | || Sbjct 69 TCCTTCTTCTTCTTCTTCCCAATTGACCCATTTGAGATCATCACCCTTCAAAGCT-CTCA 127 Query 319 AATTTACGCCTCTGCCATCGGCTCGCT-CACGGTCCTCTTCTTCGTTCTCCGTCTCCTGC 377 |||||||||||||||||||| |||||| || | || || | ||||||||||||||| Sbjct 128 AATTTACGCCTCTGCCATCGTCTCGCTCCA-AG---TCATC--C-TTCTCCGTCTCCTGC 180 Query 378 ACCATCGCTAAGGACCCAG-CTGTTGTCATGGCGGACTCGGAGAAGATTAAGGCCGCTGG 436 || ||||| || ||||| | ||| | || | | | | | | |||| || Sbjct 181 ACTATCGCCAAAGACCC-GCCTG-T-TC-T--C--A-T-------G----A--CCGCCGG 218 Query 437 ATCTGATCCGACTATGTGGCAACGACCTGATTCATTCGGTC-GTTTCGGGAAGTTTGGCG 495 |||||| ||||| ||||||||||||| ||||| ||||||| |||| ||||||||||| | Sbjct 219 ATCTGACCCGACCCTGTGGCAACGACCCGATTCGTTCGGTCGGTTT-GGGAAGTTTGGTG 277 Query 496 GCAAGTACGTCCCCGAAACTCTAATGCACGCCCTCTCTGAACTCGAAACGGCTTTCTATT 555 | ||||| || || || || || |||||||| |||||||| |||||| | ||||||||| Sbjct 278 GGAAGTATGTACCTGAGACCCTTATGCACGCGCTCTCTGAGCTCGAATCCGCTTTCTATG 337 Query 556 CGCTCGCCACCGACGAAGATTTCCAGAGAGAATTAGCAGAGATCTTGAAAGACTACGTTG 615 | |||||||||||||| ||||||||||| || || |||| ||||||||||||||| || | Sbjct 338 CTCTCGCCACCGACGATGATTTCCAGAGGGAGTTGGCAGGGATCTTGAAAGACTATGTGG 397 Query 616 GTCGGGAAAGTCCTCTTTACTTTGCAGAGAGGCTCACGGAGCATTACCGCCGTGAAAACG 675 || ||||||||||||| || |||||||||||||| || ||||||||||| || || || | Sbjct 398 GTAGGGAAAGTCCTCTGTATTTTGCAGAGAGGCTAACAGAGCATTACCGGCGCGAGAATG 457 Query 676 GTGAAGGGCCGCTCATATACCTCAAAAGGGAAGACTTGAACCACACCGGTGCTCACAAGA 735 | ||||||||||| ||||| | || ||||||||| |||||||||| ||||||||||||| Sbjct 458 GCGAAGGGCCGCTTATATATTTGAAGAGGGAAGACCTGAACCACACAGGTGCTCACAAGA 517 Query 736 TCAACAACGCTGTGGCTCAGGCTCTTCTCGCCAAGCGTCTAGGAAAGAA-ACGAATTATT 794 | ||||| |||||||||||||| ||||| ||||||||| | || ||||| | | |||||| Sbjct 518 TTAACAATGCTGTGGCTCAGGCACTTCTTGCCAAGCGTTTGGGGAAGAAGA-GGATTATT 576 Query 795 GCTGAGACAGGGGCTGGTCAACATGGTGTAGCCACAGCTACTGTGTGTGCACGTTTCGGT 854 ||||||||||| || |||||||||||||| || ||||| ||||||||||| ||||| ||| Sbjct 577 GCTGAGACAGGAGCGGGTCAACATGGTGTGGCTACAGCCACTGTGTGTGCCCGTTTTGGT 636 Query 855 -TTGCAGTGCATTATCTACATGGGTGCTCAAGACATGGAGAGACAAGCTCTTAATGTGTT 913 | | |||| |||||||| |||||||||||||| |||||||||||||| || |||||||| Sbjct 637 CTAG-AGTGTATTATCTATATGGGTGCTCAAGATATGGAGAGACAAGCACTCAATGTGTT 695 Query 914 CAGAATGCGTCTTCTCGGTGCTGAGGTAAGGGGAGTCCACTCTGGAACAGCCACTTTAAA 973 ||||||||| ||||| ||||| ||||| || ||||| |||||||||||||| || || || Sbjct 696 CAGAATGCGACTTCTTGGTGCCGAGGTGAGAGGAGTTCACTCTGGAACAGCGACATTGAA 755 Query 974 GGACGCAACTTCTGAAGCTATAAGGGATTGGGTGACCAATGTGGAGACTACACATTACAT 1033 ||| || || |||||||| ||||| ||||||||||| ||||| |||||||| |||||||| Sbjct 756 GGATGCGACATCTGAAGCGATAAGAGATTGGGTGACAAATGTTGAGACTACCCATTACAT 815 Query 1034 ATTGGGATCCGTTGCGGGTCCTCATCCTTATCCTATGATGGTCAGAGACTTTCACGCGGT 1093 ||||||||| || ||||||||||||||||| || ||||||||||||||||||||||| || Sbjct 816 ATTGGGATCTGTGGCGGGTCCTCATCCTTACCCCATGATGGTCAGAGACTTTCACGCTGT 875 Query 1094 GATTGGTAAAGAAACAAGGAAACAAGCGATGGAGAAATGGGGCGGGAAGCCTGATGTTC- 1152 |||||||||||||||||||| ||||||| ||||||||||||| |||||||| |||| || Sbjct 876 GATTGGTAAAGAAACAAGGAGACAAGCGTTGGAGAAATGGGGTGGGAAGCCGGATG-TCT 934 Query 1153 TGGTTGCTTGTGTCGGTGGTGGTTCAAATGCTATGGGACTCTTCCATGAATTTGTCGATG 1212 |||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 935 TGGTGGCTTGTGTCGGTGGTGGTTCAAACGCTATGGGACTCTTCCATGAATTTGTAAATG 994 Query 1213 ACACAGAGGTTCGAATGATTGGTGTGGAAGCCGCTGGATTTGGATTGGACAGCGGCAAAC 1272 |||||||||| || ||||| ||||||||||| || ||||| ||||||||||| ||||||| Sbjct 995 ACACAGAGGTCCGGATGATCGGTGTGGAAGCAGCGGGATTCGGATTGGACAGTGGCAAAC 1054 Query 1273 ATGCTGCCACATTGACAAAAGGAGATGTCGGTGTACTCCACGGAGCTATGAGTTACTTGC 1332 | ||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||| Sbjct 1055 ACGCTGCTACATTGACAAAGGGAGATGTCGGTGTCCTCCATGGAGCTATGAGTTACTTGC 1114 Query 1333 TGCAAGATGATGATGGCCAAATCATTGAACCACACTCCATCAGTGCCGGATTGGACTACC 1392 |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1115 TGCAAGATGATGATGGACAAATCATTGAACCACACTCCATCAGTGCAGGATTGGACTACC 1174 Query 1393 CTGGAGTCGGACCTGAGCATAGTTTCCTTAAAGACGTGGGAAGGGCTGAATACTTTAGCG 1452 ||||||||||||| ||||| ||||| |||||||| ||||| |||||||||||| |||| Sbjct 1175 CTGGAGTCGGACCCGAGCACAGTTTTTTTAAAGACATGGGACGGGCTGAATACTATAGCA 1234 Query 1453 TTACTGATGAAGAAGCATTAGAAGCTTTCAAGAGAGTGTCTCGGTTGGAGGGAATAATCC 1512 | || ||||| ||||| || ||||| |||||||||||||| ||||| |||||||| || | Sbjct 1235 TAACCGATGAGGAAGCGTTGGAAGCGTTCAAGAGAGTGTCGCGGTTAGAGGGAATCATTC 1294 Query 1513 CGGCATTGGAGACATCGCACGCATTGGCCCATCTGGAGAAGCTTTGTCCGACGTTACCTG 1572 | ||| | ||||| || |||||| | || | || |||||||| ||||| || ||| | | Sbjct 1295 CAGCACTCGAGACCTCACACGCACTAGCTTACCTCGAGAAGCTGTGTCCCACATTATCGG 1354 Query 1573 ATGGAGCCAGAGTGGTATTAAACTTCAGTGGGAGAGGCGACAAGGATGTTCAGAC 1627 | ||| | ||||| ||||| |||||||| || ||||| || || ||||||||||| Sbjct 1355 ACGGAACGAGAGTAGTATTGAACTTCAGCGGAAGAGGAGATAAAGATGTTCAGAC 1409 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69628967860 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5