BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G27120.1 Length=1249 Score E Sequences producing significant alignments: (Bits) Value Ahg492083 jgi|Araly1|492083|fgenesh2_kg.7__1516__AT4G27120.2 1661 0.0 Ahg951898 jgi|Araly1|951898|scaffold_24000001.1 159 3e-38 Ahg951504 jgi|Araly1|951504|scaffold_803391.1 159 3e-38 > Ahg492083 jgi|Araly1|492083|fgenesh2_kg.7__1516__AT4G27120.2 Length=1171 Score = 1661 bits (899), Expect = 0.0 Identities = 1041/1105 (94%), Gaps = 28/1105 (3%) Strand=Plus/Plus Query 104 AGGTAAACGATGGAGGAGATATTT-GCTCTGATAGTCTCAATGATTCTCATAGTTGCGGT 162 ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||| Sbjct 83 AGGTAAAAGATGGAGGAGAT-TTTCGCTCTGATAGTCTCAATGATTCTCATAGTTGCGGT 141 Query 163 GATTCCTTTGTTCTTTTGGAAACGTCGGAGAGATGCTAGATCACGGGAGGAAGTTGCTGA 222 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 142 GATTCCTTTGTTCTTTTGGAAACGTCGGAGAGATGCTAGATCACGGGAGCAAGTTGCAGA 201 Query 223 ACCACCACAGGTTCAACCTCGTGAAAACGTGGCACGTGCTGGTGGTGGACGGAGGATGCG 282 ||| |||||||||||| |||||||||| |||||||||||| ||||||||| |||||||| Sbjct 202 ACCGCCACAGGTTCAAGCTCGTGAAAATGTGGCACGTGCTACTGGTGGACGTAGGATGCG 261 Query 283 TAGGAGA-C--CTGCAGCTTCTGGTGCTAG---CTCCTCTACATCCAATGTTCAAGAAAA 336 | ||||| | ||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 262 TCGGAGACCTGCTGCAGCTTCTGGTGCTAGCTCCTCCTCTACATCCAATGTTCAAGTCAG 321 Query 337 CGGCAGTGGGAG-TGAAGATGAAGATGAAGATGAAGCTGGTGGAACTcaagccagagcat 395 || || | || |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 322 TGGGGGT-GAAGATGAAGATGAAGATGAAGATGAAGCTGGTGGGTCTCAAGCCAGAGCAT 380 Query 396 caaagaagaaagagaagaagcgacaagagcgggaagcacaaagacaagcTGAGGAAGCTA 455 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 381 CAAAGAAGAAAGAGAAGAAGCGACAAGAGCGGGAAGCACAAAGACAGGCTGAGGAAGCTA 440 Query 456 CACGCGAGTCAAGGAATACAAAACAAGATTGGTATGCagaaatgcggaggaagaaggatg 515 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 441 CACGCGAGTCAAGGAATACAAAACAAGATTGGTATGCAGAAATGCGGAGGAAGAAGGATG 500 Query 516 aagaacgcgaggcagaagagctgaagttggaagaagaagaaaaagcgcgacaagccaaag 575 |||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||| | Sbjct 501 AAGAGCGCGAGGCAGAGGAGCTGAAGCTGGAAGAAGAAGAAAAAGCGCGACAAGCCAAGG 560 Query 576 aagaagaGGCAGCTGCGTTAGAGTTTGACAAATGGAAAGGGGAATTTTCAGTTGATGCTG 635 |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 561 AAGAGGAGGCAGCTGCGCTAGAGTTTGACAAATGGAAAGGGGAATTTTCAGTTGATGCTG 620 Query 636 AAGGTACTACAGAGGAAGTGCAAGGTGGGAATCAAGATTTGCTTTCAGAATTTGTTGAAT 695 |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 621 AAGGTACTACAGAGGAAGTGCAAGGTGGAAATCAAGATTTGCTCTCAGAATTTGTTGAAT 680 Query 696 ACATAAAGAAACAGAAATGTGTTCCACTTGAAGATCTCGCTGCAGAATTTCATCTACGTA 755 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 681 ACATAAAGAAACAGAAATGTGTTCCACTTGAAGATCTCGCCGCAGAATTTCATCTACGAA 740 Query 756 CTCAGGAATGCATCAACAGGATCGCCTCTTTGGAGAGCATTGGGCGGCTCTCGGGGGTCA 815 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 741 CTCAGGAATGCATCAACAGGATCGCCTCTTTGGAGAGCATTGGGCGGCTCTCGGGGGTCA 800 Query 816 TGGATGATAGAGGGAAATACATTTACATATCAATGGAAGAGATGAATGCGGTTGCAGATT 875 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 801 TGGATGATAGAGGGAAATACATTTACATATCAATGGAAGAGATGAATGCGGTTGCAGATT 860 Query 876 ACATCAAACGTCAAGGAAGAGTTAGTATCTCACATCTAGCAAGCAAGTCAAACCAGTTCA 935 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 861 ACATCAAACGTCAAGGAAGAGTTAGTATCTCACATCTAGCAAGCAAGTCAAACCAGTTCA 920 Query 936 TCGACTTGGAGCCCAAAGTACAGCATCAGCTGACTGAAGAAATTAGCGGCATGGAAGAGA 995 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 921 TCGACTTGGAGCCCAAAGTACAGCATCAGCTGACCGAAGAAATTAGCGGCATGGAAGAGA 980 Query 996 TCTCAGTTTCTTAGTTGTGTTTCTCGGGTAAAATCGTTTGTCAAAAACAAGAGTTAAAAG 1055 |||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||| | Sbjct 981 TCTCAGTTTCATAGTTGTGTTCCTCGAGTAAAATCGTTTGTCAAAAACAAGAGTTAAA-G 1039 Query 1056 CCTTAGGT-GCTCACTGCAACATGATGGTGTTTGGGTCATATACCTTCTTGTTCTTATTT 1114 ||||||| | ||||||||||||||||||||||||||||||||||||||| | | Sbjct 1040 CCTTAGGGAG-TCACTGCAACATGATGGTGTTTGGGTCATATACCTTCTT-T----A--- 1090 Query 1115 TACTAGTTTGAGATCCTTAGGCTTGCATCCATATACAGTACATGAAA-TACCATATGTTT 1173 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1091 -----GTTTGAGATCCTTAGGCTTGCATCCATATACAGTACATGAAAATACCATATGTT- 1144 Query 1174 AAAATTGTTGTTTGTCTTACCATTA 1198 ||| ||||||||||||||||||||| Sbjct 1145 AAATTTGTTGTTTGTCTTACCATTA 1169 > Ahg951898 jgi|Araly1|951898|scaffold_24000001.1 Length=265 Score = 159 bits (86), Expect = 3e-38 Identities = 102/110 (93%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 331 AGAAAACGGCAGTGGGAGTGAAGATGAAGATGAAGATGAAGCTGGTGGAACTcaagccag 390 ||||||| |||||| ||||||||||||||||||||||||||||||||| | ||| || | Sbjct 140 AGAAAACATCAGTGGAAGTGAAGATGAAGATGAAGATGAAGCTGGTGGATCCCAATCCTG 81 Query 391 agcatcaaagaagaaagagaagaagcgacaagagcgggaagcacaaagac 440 ||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 80 AGCATCAAAGAAGAAAGAGAATAAGCGACAAGAGCGGGAAGCACAAAGAC 31 > Ahg951504 jgi|Araly1|951504|scaffold_803391.1 Length=200 Score = 159 bits (86), Expect = 3e-38 Identities = 102/110 (93%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 331 AGAAAACGGCAGTGGGAGTGAAGATGAAGATGAAGATGAAGCTGGTGGAACTcaagccag 390 ||||||| |||||| ||||||||||||||||||||||||||||||||| | ||| || | Sbjct 140 AGAAAACATCAGTGGAAGTGAAGATGAAGATGAAGATGAAGCTGGTGGATCCCAATCCTG 81 Query 391 agcatcaaagaagaaagagaagaagcgacaagagcgggaagcacaaagac 440 ||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 80 AGCATCAAAGAAGAAAGAGAATAAGCGACAAGAGCGGGAAGCACAAAGAC 31 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46662450408 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5