BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G27310.1 Length=1181 Score E Sequences producing significant alignments: (Bits) Value Ahg945327 jgi|Araly1|945327|scaffold_701556.1 523 1e-147 > Ahg945327 jgi|Araly1|945327|scaffold_701556.1 Length=617 Score = 523 bits (283), Expect = 1e-147 Identities = 343/370 (93%), Gaps = 11/370 (3%) Strand=Plus/Plus Query 195 AAGAGTTTGATTTTGATTAAAATGGGGAAGAAGTGTGATTTATGTAACGGTGTTGCAAGA 254 ||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1 AAGAGTTCGA-TTTGATTAAAATGGGGAAGAAGTGTGATTTATGTAGCGGTGTTGCAAGA 59 Query 255 ATGTATTGCGAGTCAGATCAAGCTAGTTTATGTTGGGATTGCGACGGTAAAGTTCACGGC 314 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 60 ATGTATTGCGAGTCAGATCAAGCTAGTTTATGTTGGGACTGCGACGGTAAAGTTCACGGC 119 Query 315 GCTAATTTCTTGGTAGCTAAACACACGCGTTGTCTTCTCTGTAGCGCTTGTCAGTCTCTT 374 |||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 120 GCTAATTTCTTGGTCGCTAAGCACACGCGGTGTCTTCTCTGTAGCGCTTGTCAGTCTCTT 179 Query 375 ACGCCGTGGAAAGC-TACTGGG-CTTCGTCTTGGCCCAACTTTCTCCGTCTGCGAGTCAT 432 |||||||||||||| | | ||| ||||| |||||||||||||||||||||||||| |||| Sbjct 180 ACGCCGTGGAAAGCCT-C-GGGACTTCGCCTTGGCCCAACTTTCTCCGTCTGCGATTCAT 237 Query 433 GCGTCGCTCTTAAAAACGCCGGCGGTGGCCGTGGAAACAGAGTTTTATCGGAGAATCGTG 492 |||||||||||||||||||||||||||| ||||||| | |||| |||||||| ||| | Sbjct 238 GCGTCGCTCTTAAAAACGCCGGCGGTGG---TGGAAACCGTGTTTCATCGGAGAGTCGAG 294 Query 493 GTCAGGAGGAGGTTAATAGTTTCGAGTCCGAAGAAGATCGGATTAGAGAAGATCA---CG 549 |||||||||||||||| |||||||||||||||||||||||||| ||||||||| | || Sbjct 295 GTCAGGAGGAGGTTAACAGTTTCGAGTCCGAAGAAGATCGGATCAGAGAAGATGATGGCG 354 Query 550 GTGACGGTGA 559 |||||||||| Sbjct 355 GTGACGGTGA 364 Score = 370 bits (200), Expect = 1e-101 Identities = 239/257 (93%), Gaps = 5/257 (2%) Strand=Plus/Plus Query 657 gaAGCGGAGAATCAAGTTGTGCCGTGGTCTGCGGCGGCGCAAGTTCCTCCGGTGATGAGT 716 ||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 363 GAAGCTGAGAATCAAGTTGTTCCGTGGTCTGCGGCGGCGCAACCACCTCCGGTGATGAGT 422 Query 717 TCTTCATCTTCTGACGGAGGAAGCGGAGGTTCAGTGACGAAGAGGACGAGGGCTAGAGAG 776 ||||||||||||||| | |||||||||||||| |||||||||||||||||| |||| ||| Sbjct 423 TCTTCATCTTCTGACTGTGGAAGCGGAGGTTCGGTGACGAAGAGGACGAGGACTAGGGAG 482 Query 777 AATTCAGATCTTCTCTGCTCCGATGATGAGATCGGAAG--C-TCTTCAGCTCAAGGGTCA 833 |||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||| Sbjct 483 AATTCAGATCTTCTCTGCTCCGATGATGAGATCGGAAGCTCTTCTTCAGCTCAAGAGTCA 542 Query 834 AACTATTCTCGGCCGTTGAAGCGATCGGCGTTTAAATCAACGGTTGTTGTTTAACTCACA 893 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | | Sbjct 543 AACTATTCTCGGCCGTTGAAGCGATCGGCGTTTAAATCAACGGTTGTGGTTTAACT-A-A 600 Query 894 CTCTACCGTATCGTCAG 910 ||||| ||||||||||| Sbjct 601 CTCTATCGTATCGTCAG 617 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44070092052 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5