BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G27360.1

Length=528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg889417 jgi|Araly1|889417|Al_scaffold_0007_1403                    536    5e-152


> Ahg889417 jgi|Araly1|889417|Al_scaffold_0007_1403
Length=333

 Score =  536 bits (290),  Expect = 5e-152
 Identities = 319/333 (96%), Gaps = 1/333 (0%)
 Strand=Plus/Plus

Query  76   ATGTTAGAAGGGAAAGCAGTAATGGGTGATACAGATATGAAGCAAACAATGAAGGAAGAT  135
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  1    ATGTTAGAAGGGAAAGCAGTAATGGGTGAGACAGATATGAAGCAAACAATGAAGGAAGAT  60

Query  136  GCTCTTAGTTTGGCCTCCAAAGCCCTTGATTGCTTTGATGTCACCGAACCTACTCAAATT  195
            |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| 
Sbjct  61   GCTCTTAGTTTGGCCTCCAAAGCCCTTGATTGCTTTGATGTCACCGAACCCACCCAAATC  120

Query  196  GCCCGTTTCATCAAGAAGGAATTTGATAGAAGTTACGGATCGGGGTGGCAGTGCATCGTG  255
            || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct  121  GCACGTTTCATCAAGAAGGAATTTGATAGTAGTTACGGATCGGGGTGGCAGTGCATCGTC  180

Query  256  GGGACGCATTTCGGATCTTTCGTGACTCATTGCAGTGGCTGCTTCATCCATTTCTCAGTT  315
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  GGGACGCATTTTGGATCTTTCGTGACTCATTGCAGTGGCTGCTTCATCCATTTCTCAGTT  240

Query  316  GGCAGCCTTACCATTTTGCTTTTTAAGGGATCAGTCGGTGAACCGGcccccccGGACCGA  375
            |||| |||||||||||||||||||||||||||||| ||||||||||| |||| |||||||
Sbjct  241  GGCACCCTTACCATTTTGCTTTTTAAGGGATCAGTAGGTGAACCGGCGCCCC-GGACCGA  299

Query  376  TGCTCTAGCTAATTTAGACAGTATTGTAAAATA  408
             | ||||||||||||||||||||||||||||||
Sbjct  300  CGGTCTAGCTAATTTAGACAGTATTGTAAAATA  332



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19230416856


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5