BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G27360.1 Length=528 Score E Sequences producing significant alignments: (Bits) Value Ahg889417 jgi|Araly1|889417|Al_scaffold_0007_1403 536 5e-152 > Ahg889417 jgi|Araly1|889417|Al_scaffold_0007_1403 Length=333 Score = 536 bits (290), Expect = 5e-152 Identities = 319/333 (96%), Gaps = 1/333 (0%) Strand=Plus/Plus Query 76 ATGTTAGAAGGGAAAGCAGTAATGGGTGATACAGATATGAAGCAAACAATGAAGGAAGAT 135 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 ATGTTAGAAGGGAAAGCAGTAATGGGTGAGACAGATATGAAGCAAACAATGAAGGAAGAT 60 Query 136 GCTCTTAGTTTGGCCTCCAAAGCCCTTGATTGCTTTGATGTCACCGAACCTACTCAAATT 195 |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 61 GCTCTTAGTTTGGCCTCCAAAGCCCTTGATTGCTTTGATGTCACCGAACCCACCCAAATC 120 Query 196 GCCCGTTTCATCAAGAAGGAATTTGATAGAAGTTACGGATCGGGGTGGCAGTGCATCGTG 255 || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 121 GCACGTTTCATCAAGAAGGAATTTGATAGTAGTTACGGATCGGGGTGGCAGTGCATCGTC 180 Query 256 GGGACGCATTTCGGATCTTTCGTGACTCATTGCAGTGGCTGCTTCATCCATTTCTCAGTT 315 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GGGACGCATTTTGGATCTTTCGTGACTCATTGCAGTGGCTGCTTCATCCATTTCTCAGTT 240 Query 316 GGCAGCCTTACCATTTTGCTTTTTAAGGGATCAGTCGGTGAACCGGcccccccGGACCGA 375 |||| |||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| Sbjct 241 GGCACCCTTACCATTTTGCTTTTTAAGGGATCAGTAGGTGAACCGGCGCCCC-GGACCGA 299 Query 376 TGCTCTAGCTAATTTAGACAGTATTGTAAAATA 408 | |||||||||||||||||||||||||||||| Sbjct 300 CGGTCTAGCTAATTTAGACAGTATTGTAAAATA 332 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19230416856 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5