BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G27390.1
Length=1024
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945315 jgi|Araly1|945315|scaffold_701544.1 1072 0.0
> Ahg945315 jgi|Araly1|945315|scaffold_701544.1
Length=755
Score = 1072 bits (580), Expect = 0.0
Identities = 692/745 (93%), Gaps = 11/745 (1%)
Strand=Plus/Plus
Query 19 GGG-AAATCAAAATTCAGACGATGGCTTCGATTCCGCAGATTATCCTTTGTAACTTCTCC 77
||| ||| | ||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1 GGGAAAAACCAAATTCAGACGATGGCTTCGATTCCGCAGATGATCTTTTGTAACTTCTCT 60
Query 78 ATACACGACGGTTTCAACAAGGAACCCAGTAACAGATTACACGCTAAAAGACGGAGCTTG 137
|||||||| ||||||||||| | |||||| |||| || |||||| ||| |||||||||||
Sbjct 61 ATACACGATGGTTTCAACAAAGTACCCAGAAACATATCACACGCGAAAGGACGGAGCTTG 120
Query 138 GCTCCTTCTATGCTCCAAACCAAGTTGGGGTTGAGAGCTTGCTTGATTGAGCATAGACAG 197
| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGTCCTTCTCTGCTCCAAAACAAGTTGGGGTTGAGAGCTTGCTTGATTGAGCATAGACAG 180
Query 198 AGACAG-CGAGTGATGGGTCTGGGAGATATTGGGATGCTAGCTAGTGAGAAATCTCTTAA 256
|||| | ||| |||||||||||||||| ||||| |||||||||||||||||| |||||||
Sbjct 181 AGAC-GACGATTGATGGGTCTGGGAGAAATTGGAATGCTAGCTAGTGAGAAAGCTCTTAA 239
Query 257 CCGTAAAAGACGGGTGGTTAGGGTTAGGGGTTTGAAGTTTAATGGTGGAGATAACAACGG 316
||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 CCGGAGAAGACGGGTGGTTAGGGTTAGGGGTTTGAAGTTTAATGGCGGAGATAACAACGG 299
Query 317 AAATGGGAGGATTCTCGGAAACCTTGCTTTGGCCATTGGCTTGACTTATCTCTCTATGAC 376
||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 300 AAATGGGAGGATTCTCGGAAACCTTGCTTTGGCTATTGGTTTAACTTATCTCTCTATGAC 359
Query 377 TGGTCAGCTTGGTTGGATTTTGGATGCTATTGTCTCTGTCTGGCTGATTGTGGTGATTGT 436
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 TGGTCAGCTTGGTTGGATTTTGGATGCTATTGTCTCTGTCTGGCTTATTGTGGTGATTGT 419
Query 437 TCCAATTTTGGGTTTGGGAGCCtttttt-tGGTGGGCACAACGAGATATTGTCCAGAGCA 495
||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||
Sbjct 420 TCCAATTTTGGGTTTGGGAGC-TTTTCTATGGTGGGCACAACGAGATATTGTCCAGAGCA 478
Query 496 ATTGTCCTAATTGTGGAAATGAGTTTCAGATATTCAAGTCAGCGATGGATGATGAAGTTC 555
||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||| |
Sbjct 479 ATTGTCCGAATTGTGGAAACGAGTTTCAGATATTCAAGTCAGCGACGGATGATGAAGTAC 538
Query 556 AGCTTTGCCCTTTCTGTACTCAACCATTCTCAGTCGTGGATGATAAGTTTGTTAAGGAAC 615
|||||||||||||||| | ||| ||||||||||| ||||||||||||||||||| ||| |
Sbjct 539 AGCTTTGCCCTTTCTGCAGTCAGCCATTCTCAGTGGTGGATGATAAGTTTGTTATGGAGC 598
Query 616 CAGTGAAATTCTCCAACCAAACTACTGCTTTTGGACAAGACTTAAATGGGTTTTCTTCTA 675
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 599 CAGTGAAATTCTCCAACCAAACTGCTGCTTTTGGACAAGACTTAAATGGGTTCTCTTCTA 658
Query 676 A----A--CCTAAGAAAGGAAAGGGTTCCTCAACAGCAGTCGTAGACATAGAAGCAGAAG 729
| | ||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 659 AGCCTAAGCCTAAGAAAGGAAAGGGTTCCTCAACAGCGGTTGTAGACATAGAAGCAGAAG 718
Query 730 TAACAGATGCAGACTGACAATGCGA 754
|||||||||||||||||||||||||
Sbjct 719 TAACAGATGCAGACTGACAATGCGA 743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38084794083
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5