BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G27410.3 Length=973 Score E Sequences producing significant alignments: (Bits) Value Ahg492058 jgi|Araly1|492058|fgenesh2_kg.7__1491__AT4G27410.3 1541 0.0 Ahg950321 jgi|Araly1|950321|scaffold_802208.1 283 1e-75 > Ahg492058 jgi|Araly1|492058|fgenesh2_kg.7__1491__AT4G27410.3 Length=951 Score = 1541 bits (834), Expect = 0.0 Identities = 913/952 (96%), Gaps = 2/952 (0%) Strand=Plus/Plus Query 1 ATGGGTGTTAGAGAGAAAGATCCGTTAGCCCAGTTGAGTTTGCCACCAGGTTTTAGATTT 60 ||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| Sbjct 1 ATGGGTGTTAGAGAGAAGGATCCGTTAGCCCAATTGAGTTTGCCACCGGGTTTTAGATTT 60 Query 61 TATCCGACAGATGAAGAGCTTCTTGTTCAGTATCTATGTCGGAAAGTTGCAGGCTATCAT 120 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 61 TATCCGACAGATGAAGAACTTCTAGTTCAGTATCTATGTCGGAAAGTTGCAGGCTATCAT 120 Query 121 TTCTCTCTCCAGGTCATCGGAGACATCGATCTCTACAAGTTCGATCCTTGGGATTTGCCA 180 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTCTCTCTCCAAGTCATCGGAGACATCGATCTCTACAAGTTCGATCCTTGGGATTTGCCA 180 Query 181 AGTAAGCAAACATGTTTCACATTTGTAGGGGAGTATAATTGTAACTATTT-AGGTAAGGC 239 ||||||||||||||||| |||||| ||||||| ||| ||||||| | ||| |||||| || Sbjct 181 AGTAAGCAAACATGTTTTACATTTTTAGGGGACTATTATTGTAAAT-TTTCAGGTAAAGC 239 Query 240 TTTGTTTGGAGAGAAGGAATGGTATTTCTTTAGCCCAAGAGATCGGAAATATCCGAACGG 299 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 CTTGTTTGGAGAAAAGGAATGGTATTTCTTTAGCCCAAGAGATCGGAAATATCCGAACGG 299 Query 300 GTCAAGACCCAATAGAGTAGCCGGGTCGGGTTATTGGAAAGCAACGGGTACTGACAAAAT 359 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 300 GTCAAGACCCAATAGAGTAGCCGGGTCGGGTTATTGGAAAGCGACGGGTACTGACAAAAT 359 Query 360 TATCACGGCGGATGGTCGTCGTGTCGGGATTAAAAAAGCTCTGGTCTTTTACGCCGGAAA 419 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 360 TATCACGGCGGATGGTCGTCGTGTCGGGATTAAAAAAGCTCTGGTTTTTTACGCCGGAAA 419 Query 420 AGCTCCCAAAGGCACTAAAACCAACTGGATTATGCACGAGTATCGCTTAATAGAACATTC 479 ||||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||| Sbjct 420 AGCTCCCAAAGGCACTAAAACAAACTGGATTATGCATGAGTATCGCTTAATCGAGCATTC 479 Query 480 TCGTAGCCATGGAAGCTCCAAGTTGGATGATTGGGTGTTGTGTCGAATTTACAAGAAAAC 539 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 480 TCGTAGCCATGGAAGCTCCAAGTTGGATGATTGGGTATTGTGTCGAATTTACAAGAAAAC 539 Query 540 ATCTGGATCTCAGAGACAAGCTGTTACTCCTGTTCAAGCTTGTCGTGAAGAGCATAGCAC 599 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 540 ATCTGGATCTCAGAGACAAGCTGTTACTCCGGTTCAAGCTTGTCGTGAAGAGCATAGCAC 599 Query 600 GAATGGGTCGTCATCGTCTTCTTCATCACAGCTTGACGACGTTCTTGATTCGTTCCCGGA 659 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 600 GAATGGGTCGTCATCGTCTTCTTCGTCACAGCTTGACGACGTTCTTGATTCGTTCCCGGA 659 Query 660 GATAAAAGACCAGTCTTTTAATCTTCCTCGGATGAATTCGCTCAGGACGATTCTTAACGG 719 ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 660 GATAAAAGACCAGTCTTTTAATCTTCCTCGGATGAATTCTCTCAGGACGCTTCTTAACGG 719 Query 720 GAACTTTGATTGGGCTAGCTTGGCAGGTCTTAATCCAATTCCAGAGCTAGCTCCGACCAA 779 ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 720 GAATTTTGATTGGGCTAGCTTGGCAGGTCTTAATCCAATCCCAGAGCTAGCTCCGACCAA 779 Query 780 TGGATTACCGAGTTACGGTGGTTACGATGCGTTTCGAGCGGCGGAAGGTGAGGCGGAGAG 839 |||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||| Sbjct 780 CGGATTACCGAGTTACGGTAGCTACGATGCGTTTCGAGCGGCGGAAGGGGAGGCGGAGAG 839 Query 840 TGGGCATGTGAATCGGCAGCAGAACTCGAGCGGGTTGACTCAGAGTTTCGGGTACAGCTC 899 |||||| ||||||| ||||||||||||| |||||||||||||||||| |||||| ||||| Sbjct 840 TGGGCACGTGAATCAGCAGCAGAACTCGGGCGGGTTGACTCAGAGTTACGGGTATAGCTC 899 Query 900 GAGTGGGTTTGGTGTTTCGGGTCAAACATTCGAGTTTAGGCAATGAGAGAGA 951 ||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 GAGCGGGTTTGGTGTTTCGGGTCAAACATTCGAGTTTAGGCAATGAGAGAGA 951 > Ahg950321 jgi|Araly1|950321|scaffold_802208.1 Length=444 Score = 283 bits (153), Expect = 1e-75 Identities = 169/176 (96%), Gaps = 3/176 (2%) Strand=Plus/Plus Query 531 CAAGAAAACATCTGGATCTCAGAGACAAGCTGTTACT---CCTGTTCAAGCTTGTCGTGA 587 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 197 CAAGAAAACATCTGGATCTCAGAGACAAGCTGTTACTACCCCGGTTCAAGCTTGTCGTGA 256 Query 588 AGAGCATAGCACGAATGGGTCGTCATCGTCTTCTTCATCACAGCTTGACGACGTTCTTGA 647 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 257 AGAGCATAGCACGAATGGGTCGTCATCGTCTTCTTCGTCTCAGCTTGACGACGTTCTTGA 316 Query 648 TTCGTTCCCGGAGATAAAAGACCAGTCTTTTAATCTTCCTCGGATGAATTCGCTCA 703 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 317 TTCGTTCCCGGAGATAAAAGATCAGTCTTTTAATCTTCCTCGGATGAATTCGCTCA 372 Score = 250 bits (135), Expect = 1e-65 Identities = 143/147 (97%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 355 AAAATTATCACGGCGGATGGTCGTCGTGTCGGGATTAAAAAAGCTCTGGTCTTTTACGCC 414 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 54 AAAATTATCACGGCGGATGGTCGTCGTGTCGGGATTAAAAAAGCTCTGGTTTTTTACGCC 113 Query 415 GGAAAAGCTCCCAAAGGCACTAAAACCAACTGGATTATGCACGAGTATCGCTTAATAGAA 474 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 114 GGAAAAGCTCCCAAAGGCACTAAAACAAACTGGATTATGCACGAGTATCGCTTAATCGAG 173 Query 475 CATTCTCGTAGCCATGGAAGCTCCAAG 501 ||||||||||||||||||||||||||| Sbjct 174 CATTCTCGTAGCCATGGAAGCTCCAAG 200 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36140525316 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5