BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G27430.1 Length=3626 Score E Sequences producing significant alignments: (Bits) Value Ahg492054 jgi|Araly1|492054|fgenesh2_kg.7__1487__AT4G27430.1 5380 0.0 > Ahg492054 jgi|Araly1|492054|fgenesh2_kg.7__1487__AT4G27430.1 Length=3449 Score = 5380 bits (2913), Expect = 0.0 Identities = 3288/3468 (95%), Gaps = 29/3468 (1%) Strand=Plus/Plus Query 103 AAAGATTGAAtttttttGCTTGTTGTGGGTTCTTTAATGGATCCAAGAACAAGACTTGAC 162 ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAACATTGAATCTTTTTGCTTGTTGTGGGTTCTTTAATGGATCCAAGAACAAGACTTGAC 60 Query 163 TATGCTCTGTTTCAGCTCACACCAACTAGAACAAGATGTGATCTTGTGATATTCTCTGGT 222 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 61 TATGCTCTGTTTCAGCTCACACCAACTAGAACAAGATGTGACCTTGTGATTTTCTCTGGT 120 Query 223 GGTGAGAATGAGAAACTTGCTTCTGGGATTTTTCAACCTTTCGTTACGCATCTCAAGAGC 282 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct 121 GGTGAGAATGAGAAACTTGCTTCTGGGATTTTTCAACCGTTCGTTACCCATCTCAAGAGC 180 Query 283 GTTAGTGATCAGATTTCTAAAGGTGGATACTCCGTTACTCTCCGTCCTTCCTCCGTTGGT 342 ||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||| ||| Sbjct 181 GTTAGAGATCAGATTTCTAGAGGTGGATACTCCGTCACTCTCCGTCCTTCCTCCGTCGGT 240 Query 343 GTTCCTTGGTTTACTAAAGTGACCCTTCAGAGATTTGTGCGATTTGTGACTACTCCGGAG 402 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 241 GTTCCTTGGTTTACTAAAGTGACCCTTCAGAGATTTGTCCGATTTGTGACTACTCCGGAG 300 Query 403 GTTCTTGAGAGGTCTGTAACATTAGAGAAGGAGATTGAGCAGATCGAGGATTCGATTCAA 462 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 301 GTTCTTGAGAGGTCTGTAACGTTAGAGAAGGAGATTGAACAGATCGAGGATTCGATTCAA 360 Query 463 GCTAATGCAGCCGCCATTGCCGGTGAAGCTGAAGGAAACGAGTTGGGTGGTACATGGACT 522 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 361 GCTAATGCAGCCGCCATTGCCGGCGAAGCTGAAGGAAACGAGTTGGGTGGTACATGGACT 420 Query 523 TCTCAAAAGTCTACGGCTTTATCAAAGACGAAAGGGGAAACTGATGGAGACACTGTGGAA 582 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 421 TCTCAAAAGTCTACGGTTTTATCAAAGACGAAAGGGGAAACTGATGGAGTCACTGTGGAA 480 Query 583 GAAAATTCGAAGGTTGGTCTTCAGCGTGTTCTGGAGAACCGTAAAGCGGCTTTGTGCAAA 642 |||||||| ||||||||||||||||||||| |||||||||| || ||||||||||||||| Sbjct 481 GAAAATTCTAAGGTTGGTCTTCAGCGTGTTTTGGAGAACCGCAAGGCGGCTTTGTGCAAA 540 Query 643 GAGCAAGCGATGGCTTATGCTCGAGCTTTGGTTGTTGGGTTTGAACTTGACTACATGGAT 702 |||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| Sbjct 541 GAGCAAGCGATGGCTTATGCTCGAGCTTTGGTTGTTGGATTTGAAGTGGACTACATGGAT 600 Query 703 GACCTCTTT-TCGTTT-GCTGATGCTTTCGGAGCTTCGCGGTTAAGGGAAGCGTGTGTTA 760 ||||| ||| || ||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 601 GACCT-TTTGTC-TTTCGCTGATGCTTTTGGAGCTTCGCGGTTAAGGGAAGCGTGTGTTA 658 Query 761 ACTTTGTGGACTTGTGCAAGAGAAAGAACGAGGATAGAATGTGGGTGGACCAAATCACTG 820 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 659 ACTTTGTGGACTTGTGCAAGAGAAAGAACGAAGATAGAATGTGGGTGGACCAAATCACGG 718 Query 821 CTATGCAAGCATTTCCTAGGCCTGAATTAACGTTCATGGGTGACTCTGGGATCGTACTCG 880 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 CTATGCAAGCATTTCCTAGGCCTGAATTAACGTTCATGGGTGACTCTGGGATCGTACTCG 778 Query 881 CTGGTGAAGAGAATGATTTGTTGAATGCTACAAACGTAAAGCATGGAAACTCTATGGATG 940 ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 779 CTGGTGAAGAGAATGATTTGTTGAATGCTACTAACGTAAAGCATGGAAACTCCATGGATG 838 Query 941 CCTCGAGCCAGGGTAGCTTTGAGACTGGCCAAGAAGGGAGAGCTCAAATGGCAATGCCGT 1000 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 CCTCGAGCCAGGGTAGCTTTGAGACTGGCCAAGAAGGGAGAGCTCAAATGGCAATGCCGT 898 Query 1001 GGCCAAACCAGTTTCCTCAGTACATGCAGAACTTTCAAGGACATGGGTATCCGCCTCCTT 1060 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 899 GGCCAAACCAGTTTCCTCAGTACATGCAGAACTTTCAAGGACATGGGTAT---CCTCCTT 955 Query 1061 ATATGTTTCCGGGGATGCAAGGTCAATCACCATATTTCCATGGGAATATGCAATGGCCTG 1120 |||||||||||||||||||||| || ||||||||||||| ||| |||||||||||||| | Sbjct 956 ATATGTTTCCGGGGATGCAAGGCCAGTCACCATATTTCCCTGGTAATATGCAATGGCCCG 1015 Query 1121 TAAACATGGGAGATGTGGAGTCAAATGAGAAGTCTTCCaagaagaaaaagaagaagaaga 1180 |||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||| | Sbjct 1016 TAAATATGGGAGATGTGGAGTCAAATGAGAAGTCTTCCAAGAAG--AAA-AAGAAGAACA 1072 Query 1181 agaataagaagaagtcgaagcaagaTGAATCTGCCGAGCCAAGCGATAATTCCAGTACTG 1240 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1073 AGAACAAGAAGAAGTCGAAGCAAGATGAATCTGCCGAGCCAAGCGATAATTCCAGTACTG 1132 Query 1241 AGACCGAATCAGAAGACGGAAATGAAGGAAAGAAACAATCCAGGAAAGTGGTTATCCGCA 1300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1133 AGACCGAATCAGAAGACGGAAATGAAGGAAAGAAACAATCCAGGAAAGTGGTTATCCGCA 1192 Query 1301 ACATAAATTATATAACTTCAAAGAGGAATGGAGCGAAGGAGAGTGATTCAGATGAGTCTG 1360 |||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||| Sbjct 1193 ACATAAATTATATAACTTCAAAGAGGAACGGAGCGAAGGAGAGCGATTTGGATGAGTCTG 1252 Query 1361 GAGAAGAAGAAGGGTTTGTGGATGGAGATTCTATTAAGCAGCAAGTAGAAGAAGCCATTG 1420 ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1253 AAGAAGAAGATGGGTTTGTGGATGGAGATTCTATCAAGCAGCAAGTAGAAGAAGCCATTG 1312 Query 1421 GCTCAGTGGAGAGACGTCATAAATCGACTTCACACCGTCAGAGGAAACACAAAAGTCACA 1480 |||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||| Sbjct 1313 GCTCAGTGGAGAGACGGCATAAATCAACTTCACGCCGTCAGAGGAAACACAAAAGTCACA 1372 Query 1481 ACGGTGATGATGATTCAAGTAACAAGGAAACTAAGGGGAATGATAATTGGGATGCCTTCC 1540 ||| ||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1373 ACGTTGACGATGATTTAAGTAACAAGGAAACTAAGGCGAATGATAATTGGGATGCCTTCC 1432 Query 1541 AGAATCTTCTTTTGAAAGACAATGATTCAGAGCCAGAAGAATTACTACGTATATCATCAA 1600 ||||||||||||||||||||||||| |||||||||||||||| |||||| | ||||||| Sbjct 1433 AGAATCTTCTTTTGAAAGACAATGACTCAGAGCCAGAAGAATCACTACGAACATCATCAT 1492 Query 1601 CTGCGTTAAATATGGCGTCTGAAGTTGTGAGAAAGAGAGAACCGCCTTCTGATGATTCAT 1660 |||||||||| |||| ||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 1493 CTGCGTTAAACATGGAGTCTGAAGTTGTGAGAAAGAGAGAACCACCTTCGGATGATTCAT 1552 Query 1661 TCTTGGTTGCAATTGGAAATGAGGATTGGGGAAGAGAAACCAGCATTGAGAAATTCAATG 1720 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1553 TCTTGGTTGCAAATGGAAATGAGGATTGGGGAAGAGAAACCAGCATTGAGAAATTCAATG 1612 Query 1721 CAGGTGAGAATGTTCGGATAATAAGGAAAGGGAACAACTATGACGAGGAGATGTTGAATC 1780 ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 1613 CAGGTGAGAATGTTCGGATGATAAGGAAAGGGAACAACTATGACGATGAGATGTTGAATC 1672 Query 1781 CGGGTAGAAGCGATGAATCAAGAAGCTATTCGCAGGCAGAGATGTCGGTTCATGATGGGA 1840 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1673 CGGGTAGAAGCGATGAATCAAGAAGCTATTCGCAGGCAGAGATGTCGGTTTATGATGGGA 1732 Query 1841 AGCTCAGAACCAGAAATGAGGCGGAAGAAGACTGGTTCATACGTAACCAAGCTGGTCCAG 1900 |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| || Sbjct 1733 AGCTCAGAGCCAGAAATGAGGCAGAAGAAGACTGGTTCATACGTAACCAAGCTGGTCTAG 1792 Query 1901 AAACAGATCCAAGTCTTGTCAAAACATTTGTAGGAGACCATTTCCACTTAAATAAGAGCA 1960 ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1793 AAACAGATCCAGGTCTTGTCAAAACATTTGTAGGAGACCATTTCCAATTAAATAAGAGCA 1852 Query 1961 GTGAGAGAGATGTCCTGACCGATGACTCTTTCATGATCCATTCTCGTGTTGAGAACCAAG 2020 ||||| |||||||||| ||||||||||| |||||||||||||||||||||||| ||||| Sbjct 1853 GTGAGGGAGATGTCCTAACCGATGACTCCTTCATGATCCATTCTCGTGTTGAGGGCCAAG 1912 Query 2021 TAGAAGATTCTCGGTTAAGGACAGAAATCATGGACTTAGACGTTTACGGAACCACCCAAC 2080 ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1913 TAGAAGAGTCTCGGTTAAGGACAGAAATCATGGACTCAGACGTTTACGGAACCACCCAAC 1972 Query 2081 AAGAAAACAGTGCCCCGGAGAACACTCCGCATGAACCAGATGACCTATACATGGTTCTTG 2140 ||||||||| ||||| |||||||||| |||||| ||||||||||| ||||||||||||| Sbjct 1973 AAGAAAACAATGCCCAGGAGAACACTTTGCATGAGCCAGATGACCTTTACATGGTTCTTG 2032 Query 2141 GACGGGAACAAGATGTTAAACCTACATTGTTACCATGGACCCCTGAAATTGACTTTGAGA 2200 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 2033 GACGGGAACAAGATGTTAAACCTACATTGTTACCGTGGACCCCTGAAATTGACTTCGAGA 2092 Query 2201 CTAACACTTTGGCTCAAAGAACAAGCAGAATCGATTTG-ATAACTGCCACAAAGGCCTCT 2259 |||||||||||||||||| |||||||| ||| |||||| | ||||| ||||||| ||||| Sbjct 2093 CTAACACTTTGGCTCAAAAAACAAGCAAAATGGATTTGGA-AACTGACACAAAGACCTCT 2151 Query 2260 GCAGGTGAACAAACCTTAGATGGTAAAGAAAAGAAGAGTCGTGGTATCTCCAAGGGGAAG 2319 || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2152 GCCGGTGAACAAACCTCAGATGGTAAAGAAAAGAAGAGTCGTGGTATCTCCAAGGGGAAG 2211 Query 2320 GATGCAAAGTCAAGAGCATCAAGTAGACCTGACCCGGCGTCAAAAGCCAAGAGACCTGCT 2379 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2212 GATGCAAAGTCAAGAGCATCTAGTAGACCTGACCCGGCGTCAAAAGCCAAGAGACCTGCT 2271 Query 2380 TGGGGAAGTAGAGCTGCTGTCTCCAAGTCCAAATCCGAGATGGAGGAAGAGAGAAAGAAG 2439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2272 TGGGGAAGTAGAGCTGCTGTCTCCAAGTCCAAATCCGAGATGGAGGAAGAGAGAAAGAAG 2331 Query 2440 AGAATGGAGGAACTTTTAATTCAGAGGCAAAAGAGAATTGCGGAGAAGAGTTCCGGTGGT 2499 |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 2332 AGAATGGAAGAACTTTTAATTCAGAGGCAAAAAAGAATTGCGGAGAAGAGTTCTGGTGGT 2391 Query 2500 AGTGTATCAAGTTCTTTAGCGTCCAAGAAAACTCCTACTGTGACCAAGTCAGTGAAGAGC 2559 ||||| |||||||| | ||||||||||||||||||| ||| ||||| ||||||||||| Sbjct 2392 AGTGTGTCAAGTTCCTCAGCGTCCAAGAAAACTCCTCCTGCAACCAAAACAGTGAAGAGC 2451 Query 2560 TCGAT-AAAGAAT-GAGAAGACTCCTGAAGCCGCGCAGTCAAAGGCTAAGCCAGTACTGA 2617 || || ||||| | |||||||| || |||||||||||||||||||||||||||||||||| Sbjct 2452 TC-ATCAAAGA-TCGAGAAGACCCCAGAAGCCGCGCAGTCAAAGGCTAAGCCAGTACTGA 2509 Query 2618 GAAGTTCCACCATTGAGCGCCTTGCTGTTGCTCGGACCGCTCCAAAGGAGCCACAGCAAA 2677 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 2510 GAAGTTCCACCATTGAGCGCCTTGCTGTTGCTCGGACCGCTCCAAAGGAGCCACAACAAA 2569 Query 2678 AACCAGTAATCAAAAGAACATCAAAACCTTCAGGATACAAGACAGAGAAAGCTCAGGAAA 2737 ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 2570 AACCAGTAATCAAAAGAACTTCAAAACCTTCAGGAAACAAGACAGAGAAAGCTCAGGAAA 2629 Query 2738 AGAAATCGAGTAAAATAGGTCAATCAGATGCGAAAAGTGTGGAACTTTCTCGTGACCCGA 2797 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 2630 AGAAATCGAGTAAAATAGGTCAATCTGATGCGAAAAGTCTGGAACTTTCTCGTGACCCGA 2689 Query 2798 GTCTCGAAATCAAGGAAACGGTGGTGGAAGATTCACATTCTTACTTGTCAGAGAAGCAAG 2857 ||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||| Sbjct 2690 GTCTCGAAATCAAGGAAACAGTGGTGGAAGATTCACAGTCTTACTTGTCTGAGAAGCAAG 2749 Query 2858 TTGATGCACTTCCTGCTGTTGCTTCTGTTGATGATTTCAAAGACATTAAAGAATTGCATA 2917 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2750 TTGATGCACTTCCTGCTGCTGCTTCTGTTGATGATTTCAAAGACATTAAAGAATTGCATA 2809 Query 2918 GCTTGCCATCAGAAGAAACGGCCAGAGTAAAGAACAGACCGAATGAAATCATAGCAGAGA 2977 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 2810 GCTTGCCATCAGAAGAAACGGCCAGAGTAAACAACAGACCGAATGAAATCATAGCCGAGA 2869 Query 2978 AAGTACAAGATCAGACGAAGATCGATGATCAGGAAACAGTGAAGAATACATCTGTTTCTG 3037 |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 2870 AAGTACAAGATCAGACGAAGATCGATGATCAGGAAACAGTCAAGAAGACATCTGTTTCTG 2929 Query 3038 AAGATAAGCAAATCACCACGAAGCATTACTCAGAGGATGTTGGAGA-AGTCCAGGCTTCA 3096 | ||||||||||||||| | || ||||| ||||||||| | ||||| | || |||| ||| Sbjct 2930 AGGATAAGCAAATCACCGCAAACCATTATTCAGAGGATATCGGAGAGA-TCAAGGCATCA 2988 Query 3097 CAGGAAAAACCGGTGTCTCCAAAGAAGTCGGTGACTTTTTCAGAGACAAACATGGAGGAG 3156 ||||||||||| | ||||||||||||||| |||||||||||||||||||||||||| ||| Sbjct 2989 CAGGAAAAACCAGCGTCTCCAAAGAAGTCAGTGACTTTTTCAGAGACAAACATGGAAGAG 3048 Query 3157 AAGTATTATTTCTCACCAGCGGTCTCAGAGATTGACATCTCAACGCCACCTGCTACTGAA 3216 ||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||| Sbjct 3049 AAGTATTATTTCTCACCAGCGGTCTCAGAGATTGACATCTCGACGCCACCGGCGACTGAA 3108 Query 3217 GCAGATCATTCGAGGAAGAAATGGAACAGTGAAGAGACGTCTCCCAAGGCAACGGCTAAA 3276 |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 3109 ACAGATCATTCCAGGAAGAAATGGAACAATGAAGAGACGTCTCCCAAGGCAACGGCTAAA 3168 Query 3277 GTCTTCAGGAAGCTTCTTATGTTCGGAAGGAAAAAGTAAAACCGA-CGTTGGAATTCTTC 3335 || || |||||||||||||||||||||||||||||||||||| || | || ||||||||| Sbjct 3169 GTTTTGAGGAAGCTTCTTATGTTCGGAAGGAAAAAGTAAAACAGAAC-TTAGAATTCTTC 3227 Query 3336 TTCTCCGGCATCATCGAACCTTTGTTTTGAGACGACGTCATGTTGAGTTCAGTTAAAAAG 3395 ||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 3228 TTCTCTGGCATCATCGAACCTTTGTTTCGAGAGGACGTCATGTTGAGTTCAGTTAAAAAG 3287 Query 3396 CCTCTCTTATTCTTTAAATTTTTCCTTGTGTGATATTAAATACTGTTTTTCat-tttatt 3454 ||||| ||||||||||||||||| |||||||||||| ||||||||||||| | ||| || Sbjct 3288 CCTCTTTTATTCTTTAAATTTTTTCTTGTGTGATATGAAATACTGTTTTTTTTGTTT-TT 3346 Query 3455 gttgttatcagtttgatttgt--ctgtttatattacatttgttgatgtgttgtttatAGC 3512 |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 3347 -TTGTTATCAGTTTGATTTGTGTCTGTTTATATTACATT-GTTGATGTGTTGTTTATAGC 3404 Query 3513 ATTGAAAGTGGGCATTTGAGTGTGTATAAAAAATTGGTTTGGTGAGTT 3560 ||||| ||||| ||||||||||| ||||||| |||||||| |||||| Sbjct 3405 ATTGATAGTGGACATTTGAGTGT--ATAAAAA-TTGGTTTGATGAGTT 3449 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 136969205227 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5