BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G27450.1 Length=1137 Score E Sequences producing significant alignments: (Bits) Value Ahg945307 jgi|Araly1|945307|scaffold_701536.1 1310 0.0 > Ahg945307 jgi|Araly1|945307|scaffold_701536.1 Length=793 Score = 1310 bits (709), Expect = 0.0 Identities = 749/769 (97%), Gaps = 0/769 (0%) Strand=Plus/Plus Query 195 AGGAGAGAAATGTTGGCTATCTTCCACGAGGCGTTTGCTCATCCGCCGGAGGAACTCAAC 254 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 12 AGGAGAGAAATGTTGGCTATCTTTCACGAGGCGTTTGCTCATCCGCCGGAGGAACTCAAC 71 Query 255 AGTCCGGCATCTGAGAAATGCTCTAAACAACCAAAACTTCCAGAAGAAACCCTAAATGAT 314 ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||| Sbjct 72 AGTCCGGCATCTGAGAAATACTCTAAACAACCAAAACTTCCAGAGGAAACCCTAAACGAT 131 Query 315 TTCTTATTACGTTACCCTCTCAACACTTTCTCCATGTCTTTCGGACAAGCTGCTGTTCTT 374 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 132 TTCTTATTACGTTACCCTCTCAACACTTTCTCCATGTCTTTCGGACAAGCAGCTGTTCTT 191 Query 375 GCTTACGTTCGTCCCTCTGCTTCCTTCTCCATCCACCAGAGGTTGTTTTGTGGATTTGAT 434 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 192 GCTTACGTTCGTCCCTCTGCTTCTTTCTCCATCCACCAGAGGTTGTTTTGTGGATTTGAT 251 Query 435 GACATCTACTGTCTCTTCTTTGGGAGCTTGAACAATCTGTGTCAGCTAAACAAACAGTAT 494 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 252 GACATCTACTGTCTGTTCTTTGGGAGCTTGAACAATCTGTGTCAGCTAAACAAACAATAT 311 Query 495 GGTCTCACCAAGACAACAAACGAGGCCATGTTTGTGATCGAAGCTTATAGGACTCTTAGA 554 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 312 GGTCTGACCAAGACAACAAATGAGGCCATGTTTGTGATCGAAGCTTATAGGACTCTTAGA 371 Query 555 GACAGAGGTCCTTATCCAGCTGATCAGGTCGTCAAAGACTTAGACGGTAGCTTTTCCTTT 614 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 372 GACAGAGGTCCTTATCCAGCTGATCAGGTCGTCAAAGACTTAGACGGCAGCTTTTCCTTT 431 Query 615 GTGGTTTATGATAGCAAAGCCGGCTCTGTCTTCACTGCTCTGGGATCTGATGGAGGGGTG 674 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 432 GTGGTTTATGATAGCAAAGCCGGTTCTGTCTTCACGGCTCTGGGATCTGATGGAGGGGTG 491 Query 675 AAGCTATACTGGGGCATAGCTGCTGATGGATCTGTTGTTATATCAGATGATTTGGATGTT 734 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 492 AAGCTATACTGGGGCATAGCTGCTGATGGATCTGTTGTTATATCAGATGATTTGGATGTT 551 Query 735 ATCAAAGAGGGTTGTGCTAAATCTTTTGCTCCATTTCCTACAGGGTGTATGTTCCATAGT 794 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 552 ATTAAAGAGGGTTGTGCTAAATCTTTTGCTCCATTCCCTACAGGGTGTATGTTCCATAGT 611 Query 795 GAAGGAGGGTTAATGAGCTTTGAGCATCCAATGAACAAGATCAAGGCGATGCCGAGGGTA 854 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || Sbjct 612 GAAGGAGGGTTAATGAGCTTTGAGCATCCGATGAATAAGATCAAGGCGATGCCGAGAGTG 671 Query 855 GACAGTGAAGGAGTTCTATGCGGTGCCAACTTCAAGGTGGATGTGTACAATCGTGTTAAC 914 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 672 GACAGTGAGGGAGTTCTATGCGGTGCCAACTTCAAGGTGGATGTGTACAATCGTGTTAAC 731 Query 915 AGTATCCCTCGTCGAGGAAGTGAAGCCAATTGGTCTCTCTGAATACTTT 963 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 732 AGTATCCCTCGTCGAGGAAGTGAAGCCAATTGGTCTCTCTGAATACTTT 780 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42392683704 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5